Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00296 ATGGGAAAAGCCTTCAAATGGTTCCGCGGCCTTCTCGGTCTCAAAAAATCCGACCCATTTATCAAACCTTCTCCTAATTCTAGGCTCCATCCCAAATGGCACTTCGCCAAATCCTTCAAAGACAACCACAAACCCAGCCACCATGACGCCGCCGCCGCCGCCGCCGCCGTCGTCAACCTCACCACCACCCGCCGGACCCTGCCCACCATCAACCCCGATTCTGCCGCCATCAAAATCCAGGCTGCATTTCGTGGATTTCTGGCAAGGAAGGCATTGAGAGCCCTAAGAGGGTTGGTAAGACTTCAGGCATTGGTTCGAGGCCATATCGAGAGGAAGCGGACAGCTGAATGGATACAGAGGATGCAGGCATTACTAAGGGCACAAGCACGGGCACGAGCAGGACGGAGTCAATCTTCTTCCGAGTTTCTGCATTCAGATATCAAATTTTCCAGCTTCTCTCCTATTGATCCTGTTACCCCAGAAAAATTTGAACACAACCCACATACTAAGAGCACTAGGTTCAAACAGATGCAGAGGAGTGGCTCAAGATTTACAACTATTGATGCTGAGAAGATTGATAGAATCCTTGAAATTGAGAGTGAAAAAACTCACTTCAAGTTGAAACCCAAGAGCCTCTTTAGCTCCATCAAGCTTGCTCTATCTTCCGATGTGCCTTCAAAAGAGCCTACAACTGCAACTACTTATCATGGTTTTCCCAGTTCATTTTCCTGCGAAACCCAATGCTTTAGTCCATTTAAATTCTCTCATGAAGTTGAGGAGAGCTCTTTCTTTTCTGTCTCATCAAGGGGTGCCAGTACAAAGAAAAGCCCCTTCACCCCAGCCAAGAGCGACAGTACGAGGAGCTATTTCAGTGGTGACTCGGAATATCCGAGTTACATGGCCTGTACTGAATCTTCAAGAGCCAAAATGAGATCCCATAGCGCTCCGAGACAGCGCCCTCAGTATGAGAGATCGAGTTCTGCCAAGCGGGGTTCTGTATACCTCGTTGGGGAATCAAGATTAACTGCACAGCAGGTATCGACATTGCAGTCCAATTTCGTCGGGAAAGCCTACCCTGGTTCTGGTCGATTGGACAAACTTGGGATGCCTGTGGGTTACAGATACTGA 1128 48.58 MGKAFKWFRGLLGLKKSDPFIKPSPNSRLHPKWHFAKSFKDNHKPSHHDAAAAAAAVVNLTTTRRTLPTINPDSAAIKIQAAFRGFLARKALRALRGLVRLQALVRGHIERKRTAEWIQRMQALLRAQARARAGRSQSSSEFLHSDIKFSSFSPIDPVTPEKFEHNPHTKSTRFKQMQRSGSRFTTIDAEKIDRILEIESEKTHFKLKPKSLFSSIKLALSSDVPSKEPTTATTYHGFPSSFSCETQCFSPFKFSHEVEESSFFSVSSRGASTKKSPFTPAKSDSTRSYFSGDSEYPSYMACTESSRAKMRSHSAPRQRPQYERSSSAKRGSVYLVGESRLTAQQVSTLQSNFVGKAYPGSGRLDKLGMPVGYRY 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3090662 3094638 - ClCG01G003070.1 Cla01g00296 263885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00296 375 MobiDBLite consensus disorder prediction 307 329 - -
Cla01g00296 375 PANTHER CALMODULIN BINDING PROTEIN IQD22 50 370 - -
Cla01g00296 375 ProSiteProfiles IQ motif profile. 73 100 IPR000048 GO:0005515
Cla01g00296 375 SMART iq_5 94 115 IPR000048 GO:0005515
Cla01g00296 375 SMART iq_5 71 93 IPR000048 GO:0005515
Cla01g00296 375 Pfam Protein of unknown function (DUF4005) 272 335 IPR025064 -
Cla01g00296 375 Pfam IQ calmodulin-binding motif 74 93 IPR000048 GO:0005515
Cla01g00296 375 PANTHER IQ-DOMAIN 5-RELATED 50 370 - -
Cla01g00296 375 ProSiteProfiles IQ motif profile. 96 123 IPR000048 GO:0005515
Cla01g00296 375 MobiDBLite consensus disorder prediction 269 289 - -
Cla01g00296 375 Gene3D - 71 114 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00296 - - - csv:101218387 538.495
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g00296 Cla05g00859 CCT
Cla01g00296 Cla05g00859 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00296 Cla-Chr1:3090662 Cla06g00605 Cla-Chr6:7332146 1.07E-26 dispersed
Cla01g00296 Cla-Chr1:3090662 Cla05g00859 Cla-Chr5:8507408 1.77E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g612 . Blo15g00158 Bda05g00058 . Bpe03g00297 . . . Cmo16g00149 . . . . . Sed01g3916 . Cpe14g00120 Bhi01g01353 Tan01g0278 Cmetu09g1857 Lac11g2130 Hepe07g0179 Mch10g0175 . Cla01g00296 Cam01g0307 Cec01g0297 Cco01g0314 Clacu01g0307 Cmu01g0292 Cre09g2216 . . . . Lsi05g01253 Csa05g00319 Chy09g01189 Cme06g00975 . . Bda06g00672 . . . . . . . . Cma16g00142 . . . . . Bhi12g00208 . . Lac11g2130 Hepe06g1578 . Lcy12g1690 Cla05g00859 Cam05g0945 Cec05g0950 Cco05g0950 Clacu05g0932 Cmu05g0890 Cre05g0975 . Csa03g01689 Chy06g00922 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007128 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00296 Cla_Chr01 FPKM 0.0 0.0 0.0 0.0 3.523125 2.813396 3.392352 0.0 0.0 0.0