Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00301 ATGGCTGACCAAAAGCTTCAAATTAATGAAAGCCAAATAGACCAATCTCTTCATCCTCCTCCTCCAATATCTAAACCAATTGTCATTGACCCTTTTGTTCCTTCTGTCCCCACATCCCAAAATCCAAATCCTAAGTCACAAGAGGGTGAAGGTGAACAAAAACAACCTAATTTGCCTCAACAACTCCCACCACTACCTCCTTCATCTTCCATGGCTTCTTCTTCAACTAAGAAGCATTCTTTGTATAGAGGAATCCGCTGCCGGAGCGGCAAATGGGTGTCCGAGATACGCGAGCCACGTAAGACAACACGCATATGGCTCGGCACGTTTCCAACTGCAGAGATGGCTGCTGCCGCTTATGATGTTGCTGCCCTTGCCCTCAAAGGCGGCGATGCGGTTCTTAACTTCCCTTCCTCTCTTCCCACCTACCCTGTTCCCGCGTCAACTTCTCCGGTCGATATTCGCACAGCTGCCTCCACTGCCGCTGCTGCTACCGCCGCTAATGCGTTGAAGAAAGCTGCGTCGTCAACTTCCCCGGTTGACGTTTGCACTACGGAAGATAGTAGCAATACCACGATGGGAATGGAGGAGTTTGTGGATGAAGAAGAAATTTTTGGGATGCCGGGTTTGTTGGCGGACATGGCGGAGGGGATGATGGTGTCCCCGCCGAGAATAAACTCGCCACCACTGTCCGATGACTCGATGGAAAATTCTGATGGAACGGAAAGTTTATGGAGCTACTTTTGA 747 49.8 MADQKLQINESQIDQSLHPPPPISKPIVIDPFVPSVPTSQNPNPKSQEGEGEQKQPNLPQQLPPLPPSSSMASSSTKKHSLYRGIRCRSGKWVSEIREPRKTTRIWLGTFPTAEMAAAAYDVAALALKGGDAVLNFPSSLPTYPVPASTSPVDIRTAASTAAAATAANALKKAASSTSPVDVCTTEDSSNTTMGMEEFVDEEEIFGMPGLLADMAEGMMVSPPRINSPPLSDDSMENSDGTESLWSYF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3166749 3167495 + ClCG01G003110.1 Cla01g00301 263890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00301 248 PANTHER ETHYLENE RESPONSE FACTOR 71 248 - -
Cla01g00301 248 CDD AP2 80 139 IPR001471 GO:0003700|GO:0006355
Cla01g00301 248 SUPERFAMILY DNA-binding domain 80 139 IPR016177 GO:0003677
Cla01g00301 248 Pfam AP2 domain 81 129 IPR001471 GO:0003700|GO:0006355
Cla01g00301 248 MobiDBLite consensus disorder prediction 1 82 - -
Cla01g00301 248 MobiDBLite consensus disorder prediction 1 18 - -
Cla01g00301 248 MobiDBLite consensus disorder prediction 227 248 - -
Cla01g00301 248 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 71 248 - -
Cla01g00301 248 Gene3D AP2/ERF domain 81 138 IPR036955 GO:0003700|GO:0006355
Cla01g00301 248 MobiDBLite consensus disorder prediction 34 58 - -
Cla01g00301 248 ProSiteProfiles AP2/ERF domain profile. 81 137 IPR001471 GO:0003700|GO:0006355
Cla01g00301 248 MobiDBLite consensus disorder prediction 223 248 - -
Cla01g00301 248 SMART rav1_2 81 143 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g00301 Cla05g00847 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00301 Cla-Chr1:3166749 Cla10g01830 Cla-Chr10:34267959 2.34E-48 dispersed
Cla01g00301 Cla-Chr1:3166749 Cla01g00302 Cla-Chr1:3196725 1.67E-35 tandem
Cla01g00301 Cla-Chr1:3166749 Cla10g00348 Cla-Chr10:4644933 2.77E-55 wgd
Cla01g00301 Cla-Chr1:3166749 Cla05g00845 Cla-Chr5:8356626 3.74E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60348 PF00847 AP2 2.40E-10 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00301 - - csv:101204373 311.997