Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00302 ATGGATTGGTTCGCTCAATTTTCTGACCCTCTTCCTTATTATGCTAATTGTAGTTACAAATCGGAATCCTCTTCCACGTTTTCAGACGCCGGAACACCTCCTCATACGGTCGCTAACTCCGACGAAGAAGTGATTCTGGCGTCCAACCGCCCAAAGCGGCGGGCCGGTCGCCGGGTTTTTAAAGAAACCAGACATCCGGTTTACAGAGGAGTACGCCGGAGGAATAACGACAAATGGGTTTGTGAGCTGAGGGAGCCAAATAAGAAGACCAGGATTTGGCTCGGGACTTACCCAACGGCGGACATGGCGGCGCGTGCGCACGATGTAGCGGCACTCGCGTTGAGAGGGAAATCGGCTTGTCTCAATTTCGCTGACTCTGCTTGGCGGTTCCCGATTCCGGCGACTGATGACCCGTCTGTGATCAGGGAGGCGGCGGCGAGGGCGGCGAATGAGTGTAAGGATGAGGAATGTAATGTGGGTCGGGAAGATGACGACGGCGTTTCGGGTCAGGCGACGGCGGATCCTGACCGACCGGATTATATCGACGATGAGGCTTTGTCGAATATGCCGATGTTGCTTGCCAGCATGGCGGAAGGACTTCTTCTTTCTCCTCCATCTTTTTGTGTCAATGATGACGTGGAGTGGGATGATGTGGCAATGAATGATGATGTGTCATTGTGGAGCTTTTAG 690 53.33 MDWFAQFSDPLPYYANCSYKSESSSTFSDAGTPPHTVANSDEEVILASNRPKRRAGRRVFKETRHPVYRGVRRRNNDKWVCELREPNKKTRIWLGTYPTADMAARAHDVAALALRGKSACLNFADSAWRFPIPATDDPSVIREAAARAANECKDEECNVGREDDDGVSGQATADPDRPDYIDDEALSNMPMLLASMAEGLLLSPPSFCVNDDVEWDDVAMNDDVSLWSF 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3196725 3197414 + ClCG01G003120.1 Cla01g00302 263891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00302 229 SUPERFAMILY DNA-binding domain 67 126 IPR016177 GO:0003677
Cla01g00302 229 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Cla01g00302 229 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700|GO:0006355
Cla01g00302 229 CDD AP2 68 126 IPR001471 GO:0003700|GO:0006355
Cla01g00302 229 Pfam AP2 domain 66 116 IPR001471 GO:0003700|GO:0006355
Cla01g00302 229 ProSiteProfiles AP2/ERF domain profile. 67 124 IPR001471 GO:0003700|GO:0006355
Cla01g00302 229 MobiDBLite consensus disorder prediction 158 178 - -
Cla01g00302 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F 1 229 - -
Cla01g00302 229 Gene3D AP2/ERF domain 67 125 IPR036955 GO:0003700|GO:0006355
Cla01g00302 229 SMART rav1_2 67 130 IPR001471 GO:0003700|GO:0006355
Cla01g00302 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 229 IPR045277 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00302 Cla-Chr1:3196725 Cla05g00845 Cla-Chr5:8356626 1.85E-67 dispersed
Cla01g00301 Cla-Chr1:3166749 Cla01g00302 Cla-Chr1:3196725 1.67E-35 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60349 PF00847 AP2 1.30E-13 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00302 - - bhj:120092445 431.795