Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00313 ATGCAAGAACCTGGGTTGGGAATGATGACTGCTCCCGGTGGATCCACTGGTGCCTTAAGCGGCGACGTTTCGGTTTCGGGTGACGGAGTTCATAACAGTCAACTGAAGGCGGAGATTGCTACTCATCCACTTTATGAGCAGCTTCTTTCAGCTCATGTTGCTTGTCTTCGTGTTGCTACTCCCATTGATCAGCTTCCGATGATCGACGCTCAGCTTTCTCAATCGCACCATGTTTTGCGTTCTTATGCTTCTTCTCAGCAGCACCACCCAAATGCTCATTCCTTAACGCCTCATGAGCGCCAAGAGCTTGACAATTTTCTGGCACAGTATATGATCGTTTTGTGCTCTTTCAAAGAGCAGCTTCAACAACATGTGAGAGTCCACGCAGTGGAAGCTGTTATGGCCTGCCGTGAAATTGAAAACACTCTACAAGCTCTTACAGGAGTGAGCCTTGGTGAAGGCACCGGTGCAACGATGTCGGATGATGAGGACGACATTCCAATGGACTTTTCGCTGGACCAATCCGGCACCGATGCACATGACATGATGGGGTTCGGACCACTGCTTCCAACCGAATCCGAAAGATCATTGATGGAGAGGGTCCGGCAAGAGCTGAAGATTGAGCTGAAACAGATTAAGAGGGAAAAACAAAGAACTAATTTATATGAACAAATTTGTGGAGTTGAGGATGAACCTGATTTGCAGTCTACAATAATTGAAGATGTGAGAGAGGAAATATTGAGAAAAAGAAGGGCTGGGAAGTTACCTGGGGATACAACTACAGTTTTGAAAAACTGGTGGCAGCAACATTCTAAGTGGCCTTACCCAACTGAAGACGATAAGGCGAAGCTGGTGGAGGAGACAGGGTTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAGTCAATGACATCCTTGAAGTCCAAGCGCAAGAGATAA 972 46.6 MQEPGLGMMTAPGGSTGALSGDVSVSGDGVHNSQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMIDAQLSQSHHVLRSYASSQQHHPNAHSLTPHERQELDNFLAQYMIVLCSFKEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGTDAHDMMGFGPLLPTESERSLMERVRQELKIELKQIKREKQRTNLYEQICGVEDEPDLQSTIIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSMTSLKSKRKR 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3311245 3314780 - ClCG01G003250.1 Cla01g00313 263902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00313 323 CDD homeodomain 249 310 IPR001356 GO:0003677
Cla01g00313 323 Pfam Homeobox KN domain 266 305 IPR008422 GO:0003677|GO:0006355
Cla01g00313 323 Pfam KNOX2 domain 97 147 IPR005541 GO:0003677|GO:0005634
Cla01g00313 323 Gene3D - 245 320 - -
Cla01g00313 323 SMART HOX_1 248 313 IPR001356 GO:0003677
Cla01g00313 323 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 323 - -
Cla01g00313 323 Pfam KNOX1 domain 35 76 IPR005540 GO:0003677|GO:0005634
Cla01g00313 323 SUPERFAMILY Homeodomain-like 248 315 IPR009057 -
Cla01g00313 323 SMART KNOX2_2 93 148 IPR005541 GO:0003677|GO:0005634
Cla01g00313 323 Coils Coil 195 222 - -
Cla01g00313 323 ProSiteProfiles 'Homeobox' domain profile. 246 309 IPR001356 GO:0003677
Cla01g00313 323 SMART KNOX1_2 33 77 IPR005540 GO:0003677|GO:0005634
Cla01g00313 323 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 323 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00313 Cla-Chr1:3311245 Cla08g01353 Cla-Chr8:26339395 5.40E-121 dispersed
Cla01g00313 Cla-Chr1:3311245 Cla05g01707 Cla-Chr5:28846938 2.76E-125 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60350 PF03791 KNOX2 8.50E-18 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00313 - - csv:101206054 571.622