Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00315 ATGGCGTCGCTTTCTTCCTCTGAAGAACCTCAAAATCAACCACCACAAGAACAGCAGCAACACCCCGTGAAGGAGAAGGAAAAGGAGTGCGTATACAAGACCAAACCCATTCAATTTCTCGGTCGTCCTACTCCTATTGTCCTCCAGAACGATAATGGCCCTTGCCCTCTCCTCGCCATATGTAATGTTCTCTTGTTGCGGAACAACTTAAATTTGGGTCCAGATGCAACTGAAGTATCACAGGAAAAATTGTTATCTCTGGTTGCTGAACGGTTGATTGACTCAAATAGTAATGTCGATAACAAAGATGCTGGTTTTGTCGAGAATCAACAACAGAATATTGCTGATGCCATTGATCTGCTGCCACGGCTAGCAACAGGGATAGATGTAAATATTAAGTTTAGGAGGATTGATGATTTTGAATTCACTCCAGAATGTGCGATTTTTGATTTGCTGGATATTCCTCTATATCATGGTTGGATAGTTGATCCTCAGGATCATGAAACTGCTAGTGCAATTGATTCCAAGTCCTACAATGCTATTATGGAGGAGCTCGTTGCTCTGGAAACGCAACAAATGGAGGGTCAGTGTAAGAACAATCCTGAAGATGATTGTATTGATTTTGTAGCTGCGACCACAGCCACTCTTGGAGTTCCGTCTCCAAATCTTTCAAAAGTTCGATCTTTTGATGAATCACCTCGTTCATTCTCTGAAGAGCAACAAATGAGAAAAGGGGATCTTGAAGAAGAGGCAGAGTTATTGAAAGCCTTGAAATTGTCTGAAACTGAAACCCCAATCTTAATGGGTAATCATGGTGTGGTCAGTGCTGAGGGGGAAACTAACTCTATTAAATTGGACGAGGAGCCATCTCCAGAGAGGGTTTCAGTCATTGATGCTGTGGAGAAGACCATAGTAAAAGACATCTGTGCTACTGACAATAATCTTACCCAGCAGTCAGATTCATCCACTGCAGATTCTGGCAAAACCTCATTGAGCAAGAGCAATGAAGATGTGTCACCTTTTCCCAATGCCACAGAGCAAGTAAGCTCTTCACCATTGAAGACTGATGCAGGAAAGCACCTTGATCAGACTGTTGAGTCTGAAGGGTATAAGATTTGCCCTGTGGAGAAGGACAATCACGAAACATTGATCGAGACTGTCACCAGTTCTGGAAGAGATGGTTCATTGGTGAATGAGAGTCCTGAGGATACTTCTAAAATGAATGATAAAAACCCTTTTCCAGCTGCTTGCGAAACAGTTGATCATAGACCAGTTGATAAGGAAGACACAATTGAACTATCAGGGCTATCTCCATCTGTTACTTGCACAGATTCAGCAGGTGGTAAAATCCAATGTATTGAGGCACCTGAAGGTTCAACTTCAACTGTTGGTAGTGAGCCTATATATGAAGGTGAGGAATGCATACTGGATCCAAGTACAGTTCTTGAAGAACGAGAACCCGTGTATGAAGGTGAAGTTGTTCTTGCGGAACAGGGTTGTGGAAGCTCCTTAAATTTCCGTAATACACAGTCAAAGGTTGAAATTAGTCCAAAACAAGGGGAGCTTATCAGGAATTTTTTAAAGAATAATGCGAGCCAGCTAACTTTTTATGGCCTTTTCTGCTTACAAGATGGTCTTAAAGAGCGTGAGCTTTGTGTTTTTTTCCGTAATAATCACTTCAGCACCATGTTTAAGCTTGATGGCCAGCTTTATCTCTTAGCTACAGACCAAGGTTACATTCATCAACCTGATTTGGTGTGGGAAAAGCTAAATGAGGTAAATGGAGACACTTTATTCATGACGAGTAATTTCAAAGAATTCAAAGTAGAAAGTCCTTCAAATGAGTCTTGGGATGAACATAATGCCATGACGAGCACAGCGGACTATCTTGCAAGCATTGATGCTACCAAACATGCCGGAACAGATTTGAATTCTGACCTGCAATTAGCAATAGCCCTGCAACAGCAAGAGTTTGAACAACAACCACAGCGACAAAACGTGCAGCAGCCATCTTCAGGCGGCAGTTCAAGGCTGGTCGTGGGTCCTCAGGTGTCTAGAACTAGTGGCAAAACCCCGCCATCTTCTTCCTCAAGGACTGACACGAAATCGAAGGAGAAGTGCAGCGTGATAAGATAA 2136 42.6 MASLSSSEEPQNQPPQEQQQHPVKEKEKECVYKTKPIQFLGRPTPIVLQNDNGPCPLLAICNVLLLRNNLNLGPDATEVSQEKLLSLVAERLIDSNSNVDNKDAGFVENQQQNIADAIDLLPRLATGIDVNIKFRRIDDFEFTPECAIFDLLDIPLYHGWIVDPQDHETASAIDSKSYNAIMEELVALETQQMEGQCKNNPEDDCIDFVAATTATLGVPSPNLSKVRSFDESPRSFSEEQQMRKGDLEEEAELLKALKLSETETPILMGNHGVVSAEGETNSIKLDEEPSPERVSVIDAVEKTIVKDICATDNNLTQQSDSSTADSGKTSLSKSNEDVSPFPNATEQVSSSPLKTDAGKHLDQTVESEGYKICPVEKDNHETLIETVTSSGRDGSLVNESPEDTSKMNDKNPFPAACETVDHRPVDKEDTIELSGLSPSVTCTDSAGGKIQCIEAPEGSTSTVGSEPIYEGEECILDPSTVLEEREPVYEGEVVLAEQGCGSSLNFRNTQSKVEISPKQGELIRNFLKNNASQLTFYGLFCLQDGLKERELCVFFRNNHFSTMFKLDGQLYLLATDQGYIHQPDLVWEKLNEVNGDTLFMTSNFKEFKVESPSNESWDEHNAMTSTADYLASIDATKHAGTDLNSDLQLAIALQQQEFEQQPQRQNVQQPSSGGSSRLVVGPQVSRTSGKTPPSSSSRTDTKSKEKCSVIR 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3329016 3340037 - ClCG01G003270.2 Cla01g00315 263904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00315 711 MobiDBLite consensus disorder prediction 660 711 - -
Cla01g00315 711 MobiDBLite consensus disorder prediction 1 19 - -
Cla01g00315 711 MobiDBLite consensus disorder prediction 315 358 - -
Cla01g00315 711 Pfam MINDY deubiquitinase 61 186 IPR033979 GO:0004843|GO:1990380
Cla01g00315 711 MobiDBLite consensus disorder prediction 315 357 - -
Cla01g00315 711 PANTHER NF-E2 INDUCIBLE PROTEIN 1 708 IPR007518 GO:0004843|GO:1990380
Cla01g00315 711 MobiDBLite consensus disorder prediction 224 244 - -
Cla01g00315 711 Coils Coil 237 257 - -
Cla01g00315 711 MobiDBLite consensus disorder prediction 1 27 - -
Cla01g00315 711 MobiDBLite consensus disorder prediction 660 698 - -
Cla01g00315 711 MobiDBLite consensus disorder prediction 390 415 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00315 K01309 MINDY1_2; ubiquitin carboxyl-terminal hydrolase MINDY-1/2 [EC:3.4.19.12] - csv:101220291 1189.1
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g421 . . . . . . Bma07g01626 . . . Cma02g01493 Cma15g01187 Car02g01253 Car15g01076 . . Cpe05g00297 . . . . . . . . . . . . . . . . Cone6ag0736 Cone9ag0741 . Csa05g00335 Chy09g01174 . . Blo19g00300 . Bda09g00065 Bpe08g01468 . . . . Cmo02g01532 Cmo15g01251 . . . . . Cpe13g00186 Bhi12g00329 . . Lac11g2154 Hepe06g1596 . Lcy12g1714 Cla01g00315 Cam01g0325 Cec01g0317 Cco01g0334 Clacu01g0327 Cmu01g0311 Cre09g2200 Lsi09g00320 . . Cme09g01707
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005681 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00315 Cla_Chr01 FPKM 5.876016 5.176531 32.507202 30.412022 42.914135 36.094082 47.498714 3.319625 3.19731 3.136564