Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00316 ATGGGTAAAGCTTTGAGAAGCAAAATGGTGAGAGGAAAAACACAAATGAAGCGGATAGAAAATGCTACAAGCAGGCAAGTTACCTTTTCAAAGCGCAGAAATGGCTTACTCAAGAAGGCTTTTGAGCTTTCAGTTCTTTGTGATGCTGAAGTTGCACTTATCATTTTCTCTCCAAGAGGCAAGCTTTACGAGTTTTCAAATTGCAGTATGAACAAGACAATTGATCGCTATCAGAACAGAACCAAAGATTTGATGTCAAGCAACAACACAGTTGAAGATGTGCAGTTGGAGAAGGAATATGACTCCTTTAGCATGACTAAGAAGTTAGAGCACCTTGAAGTTTGTAAAAGAAAACTGTTGGGAGATGGCTTGGATTTGTGTTCCATTGATGAGTTGCAGCAGCTTGAAAGGCAACTTGAAAGAAGCTTAAGCAGAATTAGGTCAAGAAAGTATCAAATGCTGAAGGAAGAAATTATGAAGCTGAAGGAAGAGGAGAAAATGTTGCTGGAAGAAAATGCAGCACTGCAGATTAAGGTTAGTACTGAGTCATCAAGAAAACAAGAAAGCAATCAAAGATCAGAATCATCAAATCGTCAAGAGATAATGGATGTGGAAACTGAACTATTCATAGGACCACCAGAGAGAAGAAGCAACAATAATAATGGTTTCCTGTAG 675 38.52 MGKALRSKMVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNCSMNKTIDRYQNRTKDLMSSNNTVEDVQLEKEYDSFSMTKKLEHLEVCKRKLLGDGLDLCSIDELQQLERQLERSLSRIRSRKYQMLKEEIMKLKEEEKMLLEENAALQIKVSTESSRKQESNQRSESSNRQEIMDVETELFIGPPERRSNNNNGFL 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3354653 3359932 + ClCG01G003280.2 Cla01g00316 263905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00316 224 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Cla01g00316 224 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Cla01g00316 224 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Cla01g00316 224 CDD MADS_MEF2_like 11 86 IPR033896 GO:0000977|GO:0045944
Cla01g00316 224 MobiDBLite consensus disorder prediction 185 201 - -
Cla01g00316 224 PANTHER MADS-BOX PROTEIN SOC1 9 214 - -
Cla01g00316 224 ProSiteProfiles K-box domain profile. 95 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla01g00316 224 MobiDBLite consensus disorder prediction 180 201 - -
Cla01g00316 224 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Cla01g00316 224 SUPERFAMILY SRF-like 11 82 IPR036879 GO:0003677|GO:0046983
Cla01g00316 224 Gene3D - 21 99 IPR036879 GO:0003677|GO:0046983
Cla01g00316 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Cla01g00316 224 Coils Coil 151 178 - -
Cla01g00316 224 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Cla01g00316 224 Pfam K-box region 96 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla01g00316 224 PANTHER MADS BOX PROTEIN 9 214 - -
Cla01g00316 224 ProSitePatterns MADS-box domain signature. 11 65 IPR002100 GO:0003677|GO:0046983
Cla01g00316 224 Coils Coil 224 224 - -
Cla01g00316 224 Coils Coil 129 149 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00316 Cla-Chr1:3354653 Cla06g00020 Cla-Chr6:251505 1.18E-69 dispersed
Cla08g00042 Cla-Chr8:1179583 Cla01g00316 Cla-Chr1:3354653 1.16E-40 dispersed
Cla01g00316 Cla-Chr1:3354653 Cla05g00211 Cla-Chr5:1884372 2.05E-74 wgd
Cla01g00316 Cla-Chr1:3354653 Cla05g00836 Cla-Chr5:8269944 6.07E-61 wgd
Cla01g00316 Cla-Chr1:3354653 Cla06g00019 Cla-Chr6:245023 2.00E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60351 PF01486 K-box 7.90E-22 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00316 - - bhj:120092764 358.221