Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00317 ATGAGGGTTTTGACGACTAATTCTTCTGTTCTTCTTGTTCCTTCAAACCCATATCAGAATTCTTCTCTCTTCCCCTGTAAACGCAAATCCAAGAAGAACAACCATGCCATAGTCCCTATGGCCAGGCTATTTGGGCCAGCTATATTTGAAGCTTCGAAGCTGAAGGTTCTGTTTTTAGGAGTGGATGAGAAGAAGCATCCAGGAAAATTTCCAAGAACTTATACGCTAACTCATAGCGATATAACTTCTAAACTCACTCTTGCCATTTCTCAGTCCATTAACAACTCTCAGCTAAGAAAAAGTAAACGTCATCGATTGGTGGAGATTCGAGAATCTCCTATCATATGGTTACAAGGATGGTACAATTGGCTGCAAAGGGATGAAGTGGTAGGAGAATGGAAGAAAGTGAAAGGAAAAATGTCTCTTCATGTTCATTGCCATATTAGTGGTGGCCATTTTCTTTTAGATCTTTGTGCTAAACTCAGATACTTCATCTTTCGCAAAGAACTTCCTGTGGTGCTGAATGCTTTTGTCCATGGAGATGTGGACTTGTTCAACAATTACCCAGAATTACAAGAGGCTTTGGTTTGGGTTTATTTTCACTCCAATATTCCAGAATTCAACAAAGTGGAATGTTGGGGCCCATTAAAGGATCCAGCCCCACCTTCAACTGGGCCCTATGGGCCCAAGTCAGATGAGCCCACTCAAAGCCAGTCCATGTGGGATTTGGGCCGGCTGGAGCGGCCCAAACCTTGCCAAGAAGATTGCAATTGTTGCTTCCCAACCATCCCTTCCATTTCATGGTCCCCCCAAAATGAGTTGGAGAGCACCTGA 834 43.41 MRVLTTNSSVLLVPSNPYQNSSLFPCKRKSKKNNHAIVPMARLFGPAIFEASKLKVLFLGVDEKKHPGKFPRTYTLTHSDITSKLTLAISQSINNSQLRKSKRHRLVEIRESPIIWLQGWYNWLQRDEVVGEWKKVKGKMSLHVHCHISGGHFLLDLCAKLRYFIFRKELPVVLNAFVHGDVDLFNNYPELQEALVWVYFHSNIPEFNKVECWGPLKDPAPPSTGPYGPKSDEPTQSQSMWDLGRLERPKPCQEDCNCCFPTIPSISWSPQNELEST 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3367560 3369984 + ClCG01G003290.2 Cla01g00317 263906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00317 277 PANTHER PROTEIN STAY-GREEN 1, CHLOROPLASTIC-RELATED 10 99 - -
Cla01g00317 277 PANTHER PROTEIN STAY-GREEN 1, CHLOROPLASTIC-RELATED 117 273 - -
Cla01g00317 277 MobiDBLite consensus disorder prediction 221 240 - -
Cla01g00317 277 Pfam Staygreen protein 49 218 IPR024438 -
Cla01g00317 277 PANTHER PROTEIN STAY-GREEN 1, CHLOROPLASTIC 10 99 - -
Cla01g00317 277 PANTHER PROTEIN STAY-GREEN 1, CHLOROPLASTIC 117 273 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00317 K22013 SGR, SGRL; magnesium dechelatase [EC:4.99.1.10] - csv:101206296 461.455
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00317 Cla-Chr1:3367560 Cla08g00644 Cla-Chr8:18604013 5.61E-53 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g424 . . . . . . . . . . Cma02g01495 . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00337 . . . . . . . . . . . . . . . . . . . Bhi12g00332 . . Lac11g2158 Hepe06g1598 . Lcy12g1716 Cla01g00317 Cam01g0327 Cec01g0319 Cco01g0336 Clacu01g0329 Cmu01g0313 Cre09g2198 Lsi09g00322 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012467 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00317 Cla_Chr01 FPKM 1.258592 1.224273 2.214891 3.150074 7.94698 9.478549 10.062673 1.517965 1.525983 1.83546