Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00318 ATGGAAAAAGAAGGTAGTAGTAGAGTAGTAGATTTCCCGGGAAAAAGGTATAGGTTTTACCTAAGATTTGCCGGGAACTCTCTTTTTCTGTCTCTCTCACAATCCAAGCTGTCAAAATTCTCTCTCTCCTTTTCTCCCTCTATTACAAGCCCTCTTCCCCTTTTACTATCTTCCCTTACTCCCTTTCTCTCTCTTCCTTTCTCTCTCTTCCCTTCTCTTTCTCTCTCTTCTCTCAATTCCATCCAGATCTCTTCCATTGATTCTCCAATGGAAGATCAAGCCCTTCCTCAGCGGACCCATCAATCTTCTTCCACGCCTTCTCCTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCGTCTTCTTTACACCTCAATTTGCCGCCTTCAATGTCTCGGCCTTCTCACTCACTTGAAACCCTAACCCCATCTCGCCAAATCGACCGTATGATCAATATCAACCATCATTTGTCCCCATCTAGAGCTATCTACTCTGATAGATTCATACCCAGTAGATCTGGTTCCAATTTTGCCCTATTTGATATCTCCCCTGTTTCCAATTCCCACTCTGATGGTCGTGAGGATACTTCTACTGCTTACGCTACGCTTCTTCGGACAGCTTTGTTTGGTCCTGATGCTGGAGTAATCCCTCCTGCTACACCTGAGAAGAGAAGCTCCCCAATGTGCCTTCCTAATCATAATATTTTTCGTTATAAGACCGAGACTAGGAGGTCAATGCATTCGCTTTCGCCTTTTGGGTTTGATGATGCCACTCCTGGGCTTAATCCTAGTCCTGTTAAGACTCCAAGGAAGGTTCCTCGATCGCCTTATAAGGTCTTGGATGCACCTGCTCTACAAGATGATTTTTATCTCAATCTTGTGGATTGGTCTTCGCATAATGTGCTGGCTGTGGGGTTGGGTAATTGTGTTTATCTCTGGAATGCTTGTAGTAGTAAGGTCACCAAGTTATGTGATTTGGGAATTGATGATAGTGTATGTTCAGTGGGGTGGGCACAGCGTGGAACTCATCTTGCTGTTGGCACTAGCAATGGGAAAGTCCAGATTTGGGATGCATCACGCTGTAAAAGGGTTAGGACCATGGAGGGCCATCGTTTACGAGTTGGGGCCTTAGCTTGGAGCTCATCTCTTTTATCGTCTGGTAGCCGGGACAAAAGTATTCTTCAAAGAGATATTCGGGCGCAGGATGATTTTGTGACTAAATTATCCGGCCATAAATCAGAGGTTTGTGGATTGAAATGGTCATATGATAATCGTGAATTGGCATCAGGAGGAAATGATAATAGATTATTTGTTTGGAATCAACATTCAACCCAACCAGTACTTAAATTTTATGAGCACACCGCTGCTGTAAAAGCTATTGCATGGTCGCCTCATCTTCATGGACTACTCGCATCAGGGGGTGGAACTGCAGATAGATGTATTCGTTTTTGGAACACAACGACCAATACACATTTGAGCTGCATGGACACTGGAAGTCAGGTGTGCAATCTGGCATGGTCCAAGAATGTTAATGAACTTGTTAGTACCCATGGGTTCTCCCAAAACCAAATTATAGTCTGGAGATATCCAACTATGTCCAAGGTCCATTGGCTTTTTTTCCCCCTTGTTCAACCTTGA 1632 44.0 MEKEGSSRVVDFPGKRYRFYLRFAGNSLFLSLSQSKLSKFSLSFSPSITSPLPLLLSSLTPFLSLPFSLFPSLSLSSLNSIQISSIDSPMEDQALPQRTHQSSSTPSPSPSSSSSSSSSSLHLNLPPSMSRPSHSLETLTPSRQIDRMININHHLSPSRAIYSDRFIPSRSGSNFALFDISPVSNSHSDGREDTSTAYATLLRTALFGPDAGVIPPATPEKRSSPMCLPNHNIFRYKTETRRSMHSLSPFGFDDATPGLNPSPVKTPRKVPRSPYKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAQRGTHLAVGTSNGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQDDFVTKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKFYEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLAWSKNVNELVSTHGFSQNQIIVWRYPTMSKVHWLFFPLVQP 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3375565 3379876 - ClCG01G003300.2 Cla01g00318 263907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00318 543 Pfam WD domain, G-beta repeat 403 438 IPR001680 GO:0005515
Cla01g00318 543 Pfam WD domain, G-beta repeat 443 483 IPR001680 GO:0005515
Cla01g00318 543 Gene3D - 230 539 IPR015943 GO:0005515
Cla01g00318 543 ProSiteProfiles Trp-Asp (WD) repeats profile. 406 447 IPR001680 GO:0005515
Cla01g00318 543 Pfam Anaphase-promoting complex subunit 4 WD40 domain 325 379 IPR024977 -
Cla01g00318 543 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 364 IPR001680 GO:0005515
Cla01g00318 543 SUPERFAMILY WD40 repeat-like 281 535 IPR036322 GO:0005515
Cla01g00318 543 SMART WD40_4 358 395 IPR001680 GO:0005515
Cla01g00318 543 SMART WD40_4 271 312 IPR001680 GO:0005515
Cla01g00318 543 SMART WD40_4 441 483 IPR001680 GO:0005515
Cla01g00318 543 SMART WD40_4 399 438 IPR001680 GO:0005515
Cla01g00318 543 SMART WD40_4 315 355 IPR001680 GO:0005515
Cla01g00318 543 SMART WD40_4 485 526 IPR001680 GO:0005515
Cla01g00318 543 MobiDBLite consensus disorder prediction 91 136 - -
Cla01g00318 543 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 406 438 - -
Cla01g00318 543 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 118 534 IPR033010 GO:0010997|GO:0097027|GO:1904668
Cla01g00318 543 PANTHER PROTEIN FIZZY-RELATED 1 118 534 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00318 K03364 CDH1, FZR1; cell division cycle 20-like protein 1, cofactor of APC complex - csv:101220762 854.358
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00318 Cla-Chr1:3375565 Cla09g01914 Cla-Chr9:36819309 3.36E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g425 . . . . . . . Bma14g00575 . . Cma02g01496 Cma15g01185 Car02g01258 Car15g01073 . . Cpe05g00294 . . . . . . . . . . . . . . . . Cone6ag0735 Cone9ag0739 . Csa05g00338 Chy09g01171 . Blo03g00379 . Bda07g00507 . . Bpe11g00694 . . . Cmo02g01537 Cmo15g01249 . . . . . Cpe13g00188 Bhi12g00333 . . Lac11g2159 Hepe06g1599 . Lcy12g1717 Cla01g00318 Cam01g0328 Cec01g0320 Cco01g0337 Clacu01g0330 Cmu01g0314 Cre09g2197 Lsi09g00323 . . Cme09g01704
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006983 1 1 1 1 1 1 4 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00318 Cla_Chr01 FPKM 17.752121 19.801064 49.841633 52.92979 107.420334 103.651848 107.733795 58.667152 54.501705 53.687237