Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00320 ATGGCTTGTTCTTCTTTAGGCTTTAACTTCTTCTTGGTGGCTTTGTTTTTGGCCATCTCCACGAGATCAACGCTCGCTGTGTTCCGACCAAGCTCATGGAACCTCGCTCATGCCACCTTTTATGGTGATGAAACTGCCTCTGAGACCATGGGTGGAGCTTGTGGGTACGGAAACTTGTTTACAAACGGGTATGGAACTGATACAGCGGCGTTGAGCTCAACACTGTTCAACAATGGCTATGCTTGTGGGACTTGCTTTCAAATCAAATGTGTGCAGTCCACGGCGTGCTACAAGAACGTGCAATTCACCACCGTGACGGCGACCAACTTGTGCCCACCAAATTGGTCAGAGGACTCCAATGCCGGCGGCTGGTGCAATCCACCAAGAGTTCACTTTGACATGGCCAAGCCTGCCTTCATGAAGATCGCCTGGTGGAAGGCTGGAATTATTCCCGTTCAGTACCGCAGGGTTCCATGTGTAAAAAAAGGAGGAGTTCGATTGAGCTTGCAAGGAAATGGATATTGGCTATTGGTGTACGTGATGAACGTAGGAGGAGGAGGTGATGTATCTTCAATGGCAGTGAAAGGAAGCAAAACAGGATGGATAACAATGAGCCATAATTGGGGAGCTTCATATCAAGCTTTTGCTTCATTGGGTGGTCAAGGCCTCTCTTTTAGAATCACTTCTTACACAACCAGAGAGACCCTTACTTTATGGAATGTCATTCCTTCAAATTGGCAAGTTGGGTTGACTTACAATTCTAATCTCAACTTCCATTGA 780 46.92 MACSSLGFNFFLVALFLAISTRSTLAVFRPSSWNLAHATFYGDETASETMGGACGYGNLFTNGYGTDTAALSSTLFNNGYACGTCFQIKCVQSTACYKNVQFTTVTATNLCPPNWSEDSNAGGWCNPPRVHFDMAKPAFMKIAWWKAGIIPVQYRRVPCVKKGGVRLSLQGNGYWLLVYVMNVGGGGDVSSMAVKGSKTGWITMSHNWGASYQAFASLGGQGLSFRITSYTTRETLTLWNVIPSNWQVGLTYNSNLNFH 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3414812 3416980 - ClCG01G003320.1 Cla01g00320 263909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00320 259 Pfam Lytic transglycolase 68 154 IPR009009 -
Cla01g00320 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 254 IPR007117 -
Cla01g00320 259 Gene3D - 164 259 IPR036749 -
Cla01g00320 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Cla01g00320 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Cla01g00320 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Cla01g00320 259 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Cla01g00320 259 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Cla01g00320 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Cla01g00320 259 Pfam Expansin C-terminal domain 165 243 IPR007117 -
Cla01g00320 259 SMART dpbb_1 68 154 IPR007112 -
Cla01g00320 259 PANTHER EXPANSIN-A15 9 259 IPR002963 GO:0009664
Cla01g00320 259 Gene3D - 17 159 IPR036908 -
Cla01g00320 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 164 IPR007112 -
Cla01g00320 259 SUPERFAMILY PHL pollen allergen 161 254 IPR036749 -
Cla01g00320 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Cla01g00320 259 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Cla01g00320 259 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Cla01g00320 259 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Cla01g00320 259 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Cla01g00320 259 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Cla01g00320 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Cla01g00320 259 PANTHER EXPANSIN-A7 9 259 - -
Cla01g00320 259 SUPERFAMILY Barwin-like endoglucanases 32 182 IPR036908 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g00320 Cla10g00327 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00320 Cla-Chr1:3414812 Cla07g00313 Cla-Chr7:3591610 4.55E-88 dispersed
Cla01g00320 Cla-Chr1:3414812 Cla10g00327 Cla-Chr10:4236919 2.07E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00320 - - csv:101221231 499.204