Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00326 ATGTCAAGTTACATAATGACAGTTCCAAAGCCTAATAAACAAATAGTTAACGAAGTTAAATCTATCATATCATACACATTACCATCAATACGAATCATTCAACTTAACCAGCCAAGACTCCTCGCAGGCGTAATCACAAGCCTCCAATGGCAAACTGTTGATGCCTTTTGCAAGTTTCCTTCACAACCGCCGGCCATGGCTGCCTCCCTTTCTCCCATTTATAACCTCCTCTTTGGTGAGTTCACCAACAGCATCAAGCCTCAGCCTTTTCCCTTAAACATGGTTCTTTTGCCTTCTCTTTTTCTCCTTCTCCTACTCAACTTCCACGGCTACGAGGCTCTAGTAGCTGAGTTTCCATTGAGCAATCTTCATACTTACATTGTCCATGTGAACAAACCAGAGACAGTTGATGATCTTGAGAGCTGGCATAGGTCATTCTTACCGACGAGTATGGAGAACTCGGAGGAGCAACCAATGTTGCTGTATTCGTACCGAAATGTGATGAGTGGTTTTGCTGCAAGACTTACTGAAGAACAAGCGAAAGCAATGGAAGAGAAGGATGGTTTCGTGTCAGCTAGGCGTGAAAAGATATTGCATTTGCATACAACTCAAACCCCTGACTTTCTAGGATTGAATCGTCAATTTGGGTTTTGGAAAGATTCAAACTTTGGAAAGGGCGTGATCATAGGAGTATTAGATGGTGGAATTACACCAAACCATCCTTCATTTGATGATGTGGGAATGCCTCAACCGCCAGCCAAATGGAAAGGGAGATGTGAGTTTAATTTCTCTGCTTGTAACAACAAGCTTATAGGTGCAAGATCTTTTAATCTCGCATCAAAAGCCTTAAAGGGGAAGATAACACCAATGGATGACTCTCCTATTGATGAAGATGGCCACGGAACTCACACGGCAAGCACTGCTGCCGGTACTTTCGTCGAGGGAGCTGAGGCATTAGGAAACGCTGTAGGTACCGCCGTTGGGATGGCACCTTTAGCTCACCTCGCCATTTACAAAGTTTGCTTTGGAGAAGATTGCCCTGACACCGACATTCTCGCCGCACTCGATGCTGCTGTTGAGGATGGTGTTGACGTCCTCTCACTCTCGCTCGGGAGCCCACCAGCACCATTCTTCGCCGACAATATAGCCATAGGCGCATTTGCAGCGATTCGAAAGGGGATTTTTGTAAGTTGCTCAGCTGCTAATTCAGGTCCTTTTAACGCCACATTGTCCAACGAAGCTCCATGGATTTTAACAGTTGCAGCTAGCACAATTGATCGAAGAATCGTAGCTGCTACAAAGCTCGGAAACGGAGAAGAATTTGACGGTGAATCTTTGTTCCAGCCAAATGATTTCCCACAAACATTCTTGCCACTTGTTTTCCCTGGTGAGAAGAATGAAACGGTTGCATTATGTGGAGAAGGATCATTGAAAAACATTGATGTAAAAGGAAAAGTTGTGGTATGCGAGAGAGGAGGAGGAATTGCAAGAATTGCAAAAGGGGTAGAAGTAAAAAATGCAGGTGGTGCCGCCATGATCCTTCTCAACATAGAATCAGATGGCTTCACTACTGAAGCAGATGCTCATGTTCTTCCAGCAAGCCACGTTAGCCACACGGCGGCCCTGAAAATCAAAGCCTACATAAACTCAACAACATACCCAACAGCCACAATTGTATTCAAAGGAACCATAATTGGCGATGATTTCTCTCCAGCCATAGCTTCTTTCTCATCTCGAGGTCCCAGCGTCGCAAGCCCCGGCATCTTGAAACCGGATATAACTGGTCCCGGTGTCAGCATTTTAGCAGCATGGCCATTCCCATTAGACAACAACACAAACACAAAGTCAACATTCAACATAATTTCAGGAACATCCATGTCTTGTCCTCATCTCAGTGGCATTGCAGCTCTGATCAAAAGCTCTCATCCTGATTGGTCACCGGCCGTCATTAAATCCGCTATAATGACGACCGCTAACATAACAAACCTTGAAGGCAACCCAATTCTTGATCAAACTCTGCAGCCGGCGGATTTGTTTGCAATTGGCGCAGGTCATGTAAACCCATCAAAAGCAACTGACCCAGGATTGGTTTATGACATTCAACCTGATGATTATATTCCTTATCTTTGTGGATTAGGATACAAAAACAACCAAGTTTCACTTATTGCTCATAAACCAATTGATTGTTTAACAACACCAAGCATTCCAGAAGGAGAACTCAACTACCCATCATTTGCGGTCGAATTAGGACCGCCGCAAACATTCACAAGAACGGTTACTAATGTTGGCGGTGGACGTGAAGTTTATACCGTCGTCATTGACGCACCGGTGGCGGTTTCTATAACAGTCCAACCAAGGAAGTTGACTTTCTCGACCTTGAACCAAAAAGCAATGTATTCAGTGACGTTTAAGAGAATTGGTTCGATTAGTCCCTCGATTGAGTTTGCTAAAGGCTATATCAAATGGGTCTCTGATAAACATGATGTTAGAAGTCCGATATCTGTTAAGTTTGTATGA 2517 44.18 MSSYIMTVPKPNKQIVNEVKSIISYTLPSIRIIQLNQPRLLAGVITSLQWQTVDAFCKFPSQPPAMAASLSPIYNLLFGEFTNSIKPQPFPLNMVLLPSLFLLLLLNFHGYEALVAEFPLSNLHTYIVHVNKPETVDDLESWHRSFLPTSMENSEEQPMLLYSYRNVMSGFAARLTEEQAKAMEEKDGFVSARREKILHLHTTQTPDFLGLNRQFGFWKDSNFGKGVIIGVLDGGITPNHPSFDDVGMPQPPAKWKGRCEFNFSACNNKLIGARSFNLASKALKGKITPMDDSPIDEDGHGTHTASTAAGTFVEGAEALGNAVGTAVGMAPLAHLAIYKVCFGEDCPDTDILAALDAAVEDGVDVLSLSLGSPPAPFFADNIAIGAFAAIRKGIFVSCSAANSGPFNATLSNEAPWILTVAASTIDRRIVAATKLGNGEEFDGESLFQPNDFPQTFLPLVFPGEKNETVALCGEGSLKNIDVKGKVVVCERGGGIARIAKGVEVKNAGGAAMILLNIESDGFTTEADAHVLPASHVSHTAALKIKAYINSTTYPTATIVFKGTIIGDDFSPAIASFSSRGPSVASPGILKPDITGPGVSILAAWPFPLDNNTNTKSTFNIISGTSMSCPHLSGIAALIKSSHPDWSPAVIKSAIMTTANITNLEGNPILDQTLQPADLFAIGAGHVNPSKATDPGLVYDIQPDDYIPYLCGLGYKNNQVSLIAHKPIDCLTTPSIPEGELNYPSFAVELGPPQTFTRTVTNVGGGREVYTVVIDAPVAVSITVQPRKLTFSTLNQKAMYSVTFKRIGSISPSIEFAKGYIKWVSDKHDVRSPISVKFV 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3538905 3541421 - ClCG01G003380.2 Cla01g00326 263915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00326 838 Gene3D Peptidase S8/S53 domain 226 705 IPR036852 GO:0004252|GO:0006508
Cla01g00326 838 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 120 835 - -
Cla01g00326 838 SUPERFAMILY Subtilisin-like 200 696 IPR036852 GO:0004252|GO:0006508
Cla01g00326 838 Pfam PA domain 472 543 IPR003137 -
Cla01g00326 838 ProSiteProfiles Serine proteases, subtilase domain profile. 208 692 - -
Cla01g00326 838 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 120 835 IPR045051 -
Cla01g00326 838 CDD PA_subtilisin_like 434 558 - -
Cla01g00326 838 Pfam Subtilase family 224 666 IPR000209 GO:0006508|GO:0008236
Cla01g00326 838 Gene3D - 709 837 - -
Cla01g00326 838 PRINTS Subtilisin serine protease family (S8) signature 296 309 IPR015500 -
Cla01g00326 838 PRINTS Subtilisin serine protease family (S8) signature 622 638 IPR015500 -
Cla01g00326 838 PRINTS Subtilisin serine protease family (S8) signature 224 243 IPR015500 -
Cla01g00326 838 CDD Peptidases_S8_3 198 659 IPR034197 -
Cla01g00326 838 SUPERFAMILY PA domain 443 577 IPR046450 -
Cla01g00326 838 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 116 201 IPR037045 -
Cla01g00326 838 Pfam Peptidase inhibitor I9 125 201 IPR010259 -
Cla01g00326 838 Pfam Fibronectin type-III domain 739 835 IPR041469 -
Cla01g00326 838 Gene3D - 426 565 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00326 - - - cpep:111786140 1191.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00326 Cla-Chr1:3538905 Cla09g00814 Cla-Chr9:8316911 0 dispersed
Cla01g00326 Cla-Chr1:3538905 Cla08g01611 Cla-Chr8:28719089 0 transposed
Cla01g00326 Cla-Chr1:3538905 Cla03g01443 Cla-Chr3:29980684 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g435 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g00696 . . . . . . . . . . . . . . . . . . Cla01g00326 Cam01g0337 Cec01g0331 Cco01g0344 Clacu01g0341 Cmu01g0321 Cre09g2189 Lsi09g00341 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002315 3 2 1 2 2 2 1 1 3 3 2 2 1 2 2 1 2 3 1 1 2 8 1 0 2 5 1 1 2 3 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00326 Cla_Chr01 FPKM 21.647345 21.33313 54.05843 53.894909 32.837688 44.370869 33.195759 69.49221 68.126823 64.438896