Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00327 ATGACGCACTTTCTTCAAACCTCCATTTCTCTCGGTTCGTTGCGCGAAAGGTTTCAATTTTCATCTTCTTCCTCTTTCCTTCACTCTAATTCCATTGAATTAAAATCCTTCTCGTGCAAAATGTCGCCCGATTCTCCAATACCAAGTCAATCCATCACCATCCCCTGCCAACTCGACCAACCTGTTGAGATTCTCGCTGCACCCGGTGTCTCTTATTCCGATTTCCTGCAAAATACCAATTTTTATGGAGGTTTTATTCAAATCTTGACGCCCTCTTTAAGCCCCACATTCAGGATTACTTCTGAGTTTCCTCCATTTTATCTTTTGGGGTTTCTTTTTTCAATGCTTTTTGGTTGCAGGAATGCCATCGATTCATCGTTGTTCAAACAATGGCTGATGAACTTGCAAAGCGAGAGGGGGATTTTAGCCAATGGAGCTATGTCTCTGAAGCGCGTTCTTATTCAGGGAGTCGATATGTTCGGAAGCAGAATTGGGTTTCTCAAATTTAAAGCCGACATCTACGATAAGCAAACCGGGAAGAAGGTTCCAGGTATTGTCTTTGCAAGAGGACCTGCTGTTGCTGTGCTTATCCTTTTGAGTTGCGAAGGAGAAACTTATGCTGTCCTGACCGAGCAGGTTAGAGTTCCTGTTGGGAAGCATATGTTGGAATTGCCTGCTGGTATGTTGGATGATGATGAGGGGGATTTTGTTGGCACTGCAGTTCGTGAGGTTGAAGAAGAAATTGGCATTCAATTAAAGGTTGAGGACATGGTTGATCTTACTGGCTTCTTGGACCCATCGACTGGATGCAGAGTCTTTCTTTCTGCTTTTCAATTTTCATCTTCTTCCTCTTTCCTTCACTTTAATTCCATCGGAGTAAGATCCTTCTCCTGCAAAATGTCGGGCGATTCTCCGATTCCAAGTCAATCCATCACCATCCCCTGCCAACTCGACCAACCTGTCCAGATTCTCGCTGCATCCGGTGTCTCTGCTTCCGATTTCCGGCAATGGCTGATCGACTTGCAAAGTGAGAGAGGGATTTTAGCCAAGGGAGCCATGTCCCTGAAGCGCGTACTTATTCAGGTCGTGGAAAATGAACTCATCGAGTTACCATTGTTCCCACTTTTTGGTCATAAGGGAGTTGATATGTTCGGAAACAAAATTGGGTTTCTCAAATTTAAAGCCGACATCTACGATAAGCAAACCGGGAAGAAGGTTCCAGGTATTGTTTTTGCAAGAGGACCTGCTGTTGCTGTGCTTATCCTTTTGAGTTGCGAAGGAGAAACTTATGCTGTCCTGACCGAGCAGGTTAGAGTTCCTGTTGGGAAGCTCATGTTGGAATTGCCTGCTGGTATGTTGGATGATGATAAAGGGGATTTTCTTGGCACAGCAGTTCGTGAGGTTGAAGAAGAAATTGGCATTCAGTTAAAGCTTGAGGACATGGTCGATCTTACCAGCTTCTTGGACCAATCGACTGGATGCAGAGTCTTTCCTTCTCCTGGAGGATGTGATGAGGGAATCGGTCTCTTCCTGTATCGAGGATCTGCAAGTAAAGAGACAATAGCAGAGCTGCAAGGAAAGGAAACCGGACTGAGGGATCATGGCGAGCTGATTAAGGTTCATGTTGTTCCTTATGAAAAACTCTGGCGCGTTACAGGAGATGCCAAGGCTCTAATGGCCATTGCACTGTATGAAATGGCTCAGAAGGAAGGGCTTTTACCTTCTTTGAAACCATGCTAA 1740 45.0 MTHFLQTSISLGSLRERFQFSSSSSFLHSNSIELKSFSCKMSPDSPIPSQSITIPCQLDQPVEILAAPGVSYSDFLQNTNFYGGFIQILTPSLSPTFRITSEFPPFYLLGFLFSMLFGCRNAIDSSLFKQWLMNLQSERGILANGAMSLKRVLIQGVDMFGSRIGFLKFKADIYDKQTGKKVPGIVFARGPAVAVLILLSCEGETYAVLTEQVRVPVGKHMLELPAGMLDDDEGDFVGTAVREVEEEIGIQLKVEDMVDLTGFLDPSTGCRVFLSAFQFSSSSSFLHFNSIGVRSFSCKMSGDSPIPSQSITIPCQLDQPVQILAASGVSASDFRQWLIDLQSERGILAKGAMSLKRVLIQVVENELIELPLFPLFGHKGVDMFGNKIGFLKFKADIYDKQTGKKVPGIVFARGPAVAVLILLSCEGETYAVLTEQVRVPVGKLMLELPAGMLDDDKGDFLGTAVREVEEEIGIQLKLEDMVDLTSFLDQSTGCRVFPSPGGCDEGIGLFLYRGSASKETIAELQGKETGLRDHGELIKVHVVPYEKLWRVTGDAKALMAIALYEMAQKEGLLPSLKPC 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3542573 3552951 - ClCG01G003390.1 Cla01g00327 263916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00327 579 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 160 282 - -
Cla01g00327 579 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 385 570 - -
Cla01g00327 579 PANTHER UDP/ADP-SUGAR PYROPHOSPHATASE 29 273 - -
Cla01g00327 579 CDD ADPRase_NUDT5 413 566 - -
Cla01g00327 579 CDD ADPRase_NUDT5 189 269 - -
Cla01g00327 579 ProSiteProfiles Nudix hydrolase domain profile. 188 354 IPR000086 -
Cla01g00327 579 SUPERFAMILY Nudix 390 565 IPR015797 -
Cla01g00327 579 PANTHER UDP/ADP-SUGAR PYROPHOSPHATASE 289 364 - -
Cla01g00327 579 PANTHER UDP/ADP-SUGAR PYROPHOSPHATASE 380 575 - -
Cla01g00327 579 SUPERFAMILY Nudix 166 258 IPR015797 -
Cla01g00327 579 PANTHER NUDIX HYDROLASE 14, CHLOROPLASTIC 289 364 - -
Cla01g00327 579 ProSiteProfiles Nudix hydrolase domain profile. 412 565 IPR000086 -
Cla01g00327 579 PANTHER NUDIX HYDROLASE 14, CHLOROPLASTIC 29 273 - -
Cla01g00327 579 PANTHER NUDIX HYDROLASE 14, CHLOROPLASTIC 380 575 - -
Cla01g00327 579 Pfam NUDIX domain 189 266 IPR000086 -
Cla01g00327 579 Pfam NUDIX domain 413 549 IPR000086 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00327 K18447 NUDX14; ADP-sugar diphosphatase [EC:3.6.1.21] - csv:101208090 487.648
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g439 . . . . . . . . . . . Cma15g01181 . . . . . . . . . . . . . . . . . . . Cone8ag0345 Cone12ag0339 . . . . . . . Blo19g00291 . . Bpe08g01456 . . . . . Cmo15g01243 . . . . . Cpe13g00192 . . . . . . . Cla01g00327 Cam01g0339 Cec01g0333 Cco01g0346 Clacu01g0343 Cmu01g0323 Cre09g2187 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006179 1 1 1 0 1 2 1 2 2 1 1 2 1 1 1 1 2 2 1 2 1 3 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00327 Cla_Chr01 FPKM 4.296483 4.648266 4.299467 4.858008 6.282043 7.720707 6.365629 6.852467 7.697456 7.251461