Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00330 ATGGAATTTTCAATCTTCAGTTGCATATTATGGATGATTGTAACTTCCATAGTCATCCATTTGATATCAAGCAGCAGAAAAAGACCCAATTTTCCACCGGGACCCAGATCCCTTCCGATCATCGGAAATCTATTAGACGTTGGGGACAAACCCCACAAATTTCTCGCCGACGTTGCCAAAGCCCACGGCCCAATCGCGTCATTAAAGCTCGGCCAAGTTAGTACCGTCGTCGTATCATCGCCGGAGACAATCCGACAAGTACTTGAAACCCACGACCATGTATTATCCTGCAGAGCCATCCCGGACGCCACCAGATTTTCCGACCACGAGCAACTAGGTATACTGTGGGTTGTTCCGGCTTCCCCCATAGGGAAAAACATTAGAAAATTTTTCAAAAGCAGACTGTTTTCCCCAAAAAGTCTGGAGGCGAAGGAAAGTCTCCGAGGAGCGAAGATTGAAGAGCTTTTGGATAGCATCCGAGAAAGCGCCGTGAATGGCAAGGTTGTGGATGTTGGAGCGGCTGCGTTTGGGCTGTCGCTTAATTTGATGTCGTGTTCGATTTGGTCAATGGATTTGGCTGACACCAATTCTGAAATGGTGATACAATTTAAGTCAACGTTTAGGGGAGTTTTGGAAGAATATGGGAAACCAAATATTAGTGATTTTTTTCCTGTGCTTAAGAAGTTGGATATTCAGGGTGTAAGGAGGCGCACCGCCGTTCATTTAAGAAAGATGTTCGATTTGATTGATGAGATGATTGATCGACGGCTGAAAATGCAAGAATCGCTTGATTTCACACCTAAATTTGATATGTTACATCATTTTCTCAACAACGACGAGGTTCTTCTGGATAGAAATCAAATTAGACATTCAATATTGGATCTATTTTTATCAAGCACAGATACAACTACAACAACAGTTCAATGGGCAATGGCATATCTTCTACAAAACCCAAAAGCTATGTCAAAAGCCAAAGGAGAGCTCGACCAAATGATCGGCAAAGGAAATCCAGTTCAGGAATCACATATTGAGAAGCTTCCATATTTACAAGCAGTCATCAAAGAAACAATGCGATTGCAATCTTCACTTCTTCTTCCTCGTAAAGTTGAATCAGAAGTCACCATTTCTGGCTTCACAATTCCAAAGGGAACCCAAATAATTGTCAATCTTTGGGCATTAGGCAGAGACTCGAATATTTGGGAACACCCAAATTCCTTCATGCCAGAAAGGTTCTTAGGTGACTTCAATACCAAAGGTCGAAATTTTGAGTTCATTCCATTCGGTAGTGGGAGGAGAATTTGCCCTGGACAACCATTAGCAGTGAGGAAGTTGGATTTTTTCACCTCCTGTTTCCTAATCTCCCTTATCTCCATTTTCATAACCCTCCGCCGTCTGATTCGGGCGAAAACAATTCCCAAGCTTCCACCCGGACCAACACCTCTTCCCATCATCGGAAACCTATTGGATCTTGGAACAACACCCCACAAATCTCTCGCCAAACTTTCCAAATCTTACGGTCCAATTATGTCATTAAAGCTCGGCCAAGTCACTGCCGTCGTCGTATCTTCGCCGGAGACAATCCAACAAGTTCTTCAAACACATGACCATGTCTTATCTTACAGAGCCGTTCCCGACGCTCTAACGCCTTACGACCACGGTCAACAAGGATTTCCATGGATTCCCATTTCCCCCACTTGCGAAAACATTCGAAGAATCCGCAACACCTATCTTTTGTCTCCCAAGACTCTGGACACCAATCGAAATCTCTGCCGTATGAGGATAGACGACCTTCTTGATAATGTCCGACGACGCGCTGTGAACGGCGGGGCGGTGGACATTGGAGGAGTTGTGTTTGCAACGACGCTTAATTTGACTTTTTTTCCGGTGCTGAAGAAGATGGATATCCAAGGTGTAAGGAGGCGCATCACCGTTCATTTTAGAAAGATGTTTGATTTGATTGATGAGATGATTGATCAACGGCTTAAGATGCAGGAATCGCCTGATTTTACACCGAAAAATGATATGCTACATCATCTTCTTAACATGAGAGAGGAAAACAACGAGATCCCTCTTCATAGAAACCAAATCAAACATTAA 2097 43.63 MEFSIFSCILWMIVTSIVIHLISSSRKRPNFPPGPRSLPIIGNLLDVGDKPHKFLADVAKAHGPIASLKLGQVSTVVVSSPETIRQVLETHDHVLSCRAIPDATRFSDHEQLGILWVVPASPIGKNIRKFFKSRLFSPKSLEAKESLRGAKIEELLDSIRESAVNGKVVDVGAAAFGLSLNLMSCSIWSMDLADTNSEMVIQFKSTFRGVLEEYGKPNISDFFPVLKKLDIQGVRRRTAVHLRKMFDLIDEMIDRRLKMQESLDFTPKFDMLHHFLNNDEVLLDRNQIRHSILDLFLSSTDTTTTTVQWAMAYLLQNPKAMSKAKGELDQMIGKGNPVQESHIEKLPYLQAVIKETMRLQSSLLLPRKVESEVTISGFTIPKGTQIIVNLWALGRDSNIWEHPNSFMPERFLGDFNTKGRNFEFIPFGSGRRICPGQPLAVRKLDFFTSCFLISLISIFITLRRLIRAKTIPKLPPGPTPLPIIGNLLDLGTTPHKSLAKLSKSYGPIMSLKLGQVTAVVVSSPETIQQVLQTHDHVLSYRAVPDALTPYDHGQQGFPWIPISPTCENIRRIRNTYLLSPKTLDTNRNLCRMRIDDLLDNVRRRAVNGGAVDIGGVVFATTLNLTFFPVLKKMDIQGVRRRITVHFRKMFDLIDEMIDQRLKMQESPDFTPKNDMLHHLLNMREENNEIPLHRNQIKH 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3568732 3573384 - ClCG01G003410.2 Cla01g00330 263919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00330 698 SUPERFAMILY Cytochrome P450 472 697 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00330 698 PANTHER CYTOCHROME P450 FAMILY MONOOXYGENASE 8 451 - -
Cla01g00330 698 PANTHER CYTOCHROME P450 FAMILY MONOOXYGENASE 626 698 - -
Cla01g00330 698 PANTHER CYTOCHROME P450 FAMILY MONOOXYGENASE 451 624 - -
Cla01g00330 698 Gene3D Cytochrome P450 463 698 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00330 698 Gene3D Cytochrome P450 17 457 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00330 698 Pfam Cytochrome P450 32 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00330 698 Pfam Cytochrome P450 475 624 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00330 698 PRINTS E-class P450 group I signature 59 78 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00330 698 PRINTS E-class P450 group I signature 287 304 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00330 698 PRINTS E-class P450 group I signature 307 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00330 698 PRINTS E-class P450 group I signature 350 368 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00330 698 PRINTS E-class P450 group I signature 389 413 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00330 698 PRINTS E-class P450 group I signature 424 434 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00330 698 PRINTS E-class P450 group I signature 434 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00330 698 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 451 624 - -
Cla01g00330 698 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 626 698 - -
Cla01g00330 698 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 8 451 - -
Cla01g00330 698 PRINTS P450 superfamily signature 298 315 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00330 698 PRINTS P450 superfamily signature 351 362 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00330 698 PRINTS P450 superfamily signature 425 434 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00330 698 PRINTS P450 superfamily signature 434 445 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00330 698 SUPERFAMILY Cytochrome P450 25 452 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00330 698 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 427 436 IPR017972 GO:0005506|GO:0016705
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00330 - - - csv:101218322 667.151
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00330 Cla-Chr1:3568732 Cla07g00138 Cla-Chr7:1573206 6.68E-65 dispersed
Cla01g00328 Cla-Chr1:3556333 Cla01g00330 Cla-Chr1:3568732 1.17E-69 proximal
Cla01g00329 Cla-Chr1:3563307 Cla01g00330 Cla-Chr1:3568732 1.57E-63 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g442 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00349 Chy09g01155 . . . . . . . . . . . . . . . . . . Bhi12g00547 . . . . . . Cla01g00330 . . . . . . Lsi09g00352 . . Cme09g01689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000276 0 5 1 0 1 4 0 5 5 7 5 5 3 10 7 9 5 5 4 5 6 6 4 5 7 13 5 4 4 6 146
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00330 Cla_Chr01 FPKM 5.777859 6.719527 18.033934 17.993235 24.228661 22.813055 25.097944 16.407448 15.142828 17.313972