Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00335 ATGACCCAGACCCGATTCTTCCAGACTCGCAATTCCAAATCCGACGAAGAAGCAGAACCCACCACAAGCGGTGGCGGAGGAGCCGCCATGAGAGTCATAGTGCCTCTGCAAGGCGTCGTTCAAGGAAGAGGCGGCGTCGTTTTGGGCTCTGTTATACCTTGCGTTCTCTTCTACTTTCTTCAGCTCTACTTGAAACGAAACCGGTCCGACCCCTCCCCGGACCCTCCTTCCTCCCCAGAGGTGGATTCTTCGGGGAACTCTTCGCCGTCGTCGAGTAATCAGTTAGTGGAACTCTCCGTGCTGCCTCGAACATTGTCGCGGACCTTCCTCTCGCCGAGGTCGAGTGGGCCGGTTTGCGTTTCGGGTCGGGCTAATTCGATTTCTAGAGTTGGGGATTCTTCTATTTTTGTTGGAATGAGAAGGTTCTTGGAGGACCCATTTGATGAATTGGATAATCCGACGGGGATTATTCAGCTTTCTGTTGCTGAGAATAAGTTATCCTCGGACTTGGTGCAAAATTGGCTAACGGAGAATGGAAGAGATGTTATATTAGGAGGAGTGAATCATAATGAGCTGAGTGTAGCTGGGACTGTTTGTTATCAGCCTTCAGATGGATTGACGGATTTGAAACTGGCTGTAGCGAGCTTCATGTCTCAAGTTGTAGGGAACTCTATTTCATTCATCCCTTCCCAATTAGTATTTACGACTGGAGTGACCTCTGCAATCGAAACTCTTTGCTTTTGCATAGCAGACCCGGGACATGCGTTTCTTGTTCCTACGCCATATTACCCTGGGTACTTGTTCATTCCTATTTCGTGCAATACTATTTTAGTTTTATCTGGAAAAACTAAGATTCTAAATCACAAATGCAGTCTTGACAATGATGTCAAATGGCGAACTGGGGTGGAGATAGTACCCGTTCCCTGCCGGAGTGCCGATAACTTCAGTTTAAGCATAACTTCTCTTGACCGAGCATTCCACCAGGCAAGGAATCGCGGCCTAAAAGTTCGTGGAATTATAATCTCAAATCCCTCAATTCCTGTTGGAAATCAACTAAATAGAGAAACACTCTACGACCTTCTGGACTTTGCCAGGGAGAAAAACATCCATATCATATCAAATGAAATATTTGTAGGGTCAACCTATGGAAGTGAAGAGTTCGTGAGCATGGCTGAAATGATCGATGTAGAAGACAGCGACCGAGACAGAGTTCATATTACATATGGTTTATCTGAAGACATGTCACTTCCTGGTTTTGGAGTTGCTGCAATCTACTCTTTGAATGAGAATATCCTGGCTGCTGCTAGAAAACTGGCAAGGTTCTCTTCTGTTTCTGCCATAACCCAGAACCTCCTTTCTTCCATGCTTTCAGATGCGCAATTCATCAAGAGATTCATTCGAACCAATCGAGAGAGGCTTGGAGAAATGAATGGTAAATTCACTGCAGGGCTGAAGGAACTCGACATCAAATGTATGAGGAGCAATGGAGGTTTCTACTGCTGGGCAGATATGGGCAAGTTCATCCGCTCTTACAGCGAGAAAGGGGAACTTGAGCTCTGGGAAAAGTTGTTGGATATAGGTAAAGTTAATGTTACCCCTGGCTCTTGCTGTAGTTGTATTGAACCGGGATGGTTTGGATTCTGTTTTACAACTTTGATTGATAAAGAAATACCTATTGTTATGGACCGAATTCGGAGAATTTCCGAAGCTTGTAAATCTTATACTTGA 1728 45.2 MTQTRFFQTRNSKSDEEAEPTTSGGGGAAMRVIVPLQGVVQGRGGVVLGSVIPCVLFYFLQLYLKRNRSDPSPDPPSSPEVDSSGNSSPSSSNQLVELSVLPRTLSRTFLSPRSSGPVCVSGRANSISRVGDSSIFVGMRRFLEDPFDELDNPTGIIQLSVAENKLSSDLVQNWLTENGRDVILGGVNHNELSVAGTVCYQPSDGLTDLKLAVASFMSQVVGNSISFIPSQLVFTTGVTSAIETLCFCIADPGHAFLVPTPYYPGYLFIPISCNTILVLSGKTKILNHKCSLDNDVKWRTGVEIVPVPCRSADNFSLSITSLDRAFHQARNRGLKVRGIIISNPSIPVGNQLNRETLYDLLDFAREKNIHIISNEIFVGSTYGSEEFVSMAEMIDVEDSDRDRVHITYGLSEDMSLPGFGVAAIYSLNENILAAARKLARFSSVSAITQNLLSSMLSDAQFIKRFIRTNRERLGEMNGKFTAGLKELDIKCMRSNGGFYCWADMGKFIRSYSEKGELELWEKLLDIGKVNVTPGSCCSCIEPGWFGFCFTTLIDKEIPIVMDRIRRISEACKSYT 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3610423 3613288 + ClCG01G003470.2 Cla01g00335 263924

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00335 575 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 231 251 - -
Cla01g00335 575 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 159 185 - -
Cla01g00335 575 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 435 458 - -
Cla01g00335 575 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 253 274 - -
Cla01g00335 575 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 21 266 - -
Cla01g00335 575 CDD AAT_like 200 566 - -
Cla01g00335 575 MobiDBLite consensus disorder prediction 1 28 - -
Cla01g00335 575 Pfam Aminotransferase class I and II 170 266 IPR004839 GO:0009058|GO:0030170
Cla01g00335 575 Pfam Aminotransferase class I and II 292 564 IPR004839 GO:0009058|GO:0030170
Cla01g00335 575 PANTHER AMINOTRANSFERASE ACS12-RELATED 291 571 - -
Cla01g00335 575 Gene3D Aspartate Aminotransferase, domain 1 459 563 IPR015422 GO:0003824
Cla01g00335 575 Gene3D Aspartate Aminotransferase, domain 1 145 178 IPR015422 GO:0003824
Cla01g00335 575 PANTHER AMINOTRANSFERASE ACS12-RELATED 21 266 - -
Cla01g00335 575 SUPERFAMILY PLP-dependent transferases 128 567 IPR015424 -
Cla01g00335 575 MobiDBLite consensus disorder prediction 79 93 - -
Cla01g00335 575 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 291 571 - -
Cla01g00335 575 MobiDBLite consensus disorder prediction 68 93 - -
Cla01g00335 575 Gene3D - 179 266 IPR015421 GO:0003824
Cla01g00335 575 Gene3D - 292 458 IPR015421 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00335 K14270 ACS10_12; aminotransferase - csv:101208573 977.237
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g00335 Cla05g00816 CCT
Cla01g00335 Cla05g00816 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00335 Cla-Chr1:3610423 Cla01g01747 Cla-Chr1:32368105 6.42E-120 dispersed
Cla01g00335 Cla-Chr1:3610423 Cla05g00816 Cla-Chr5:7960713 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g453 . . . . . . . . . . . Cma15g01179 . Car15g01067 . . . . . . . . . . . . . . . . . . . . . . Csa05g00357 Chy09g01150 . Blo03g00382 . . . . Bpe11g00697 . . . . Cmo15g01239 . . . . . Cpe13g00195 Bhi12g00353 . . Lac11g2187 Hepe06g1617 . Lcy12g1741 Cla01g00335 Cam01g0348 Cec01g0344 Cco01g0356 Clacu01g0352 Cmu01g0332 Cre09g2178 Lsi09g00361 . . Cme09g01682
Vvi16g513 . . . Bda07g01835 Bpe03g00099 . . Bma14g02107 . Cmo18g01218 . Cma15g01179 . Car15g01067 Sed01g3949 . . Bhi01g01257 Tan01g0340 Cmetu06g0541 . Hepe07g0221 Mch10g0223 . Cla01g00335 Cam01g0348 Cec01g0344 Cco01g0356 Clacu01g0352 Cmu01g0332 Cre09g2178 Cone1ag1108 Cone5ag0817 . . . Csa05g00357 Chy09g01150 Cme06g00927 Blo07g00461 Blo09g00131 . . . . . . . . Cmo15g01239 . Cma18g01197 . Car18g01106 Cpe09g00132 Cpe13g00195 Bhi12g00353 . . Lac11g2187 Hepe06g1617 . Lcy12g1741 Cla05g00816 Cam05g0899 Cec05g0903 Cco05g0908 Clacu05g0890 Cmu05g0846 Cre05g0932 . Csa03g01642 Chy06g00879 Cme09g01682
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002106 1 2 3 1 2 2 2 2 2 2 2 2 3 2 2 3 2 5 3 2 2 2 2 2 2 2 2 2 2 1 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00335 Cla_Chr01 FPKM 20.673929 23.11648 20.933725 20.687099 21.472618 20.028017 19.579733 15.175589 13.328601 13.08845