Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00337 ATGGGTTCGGAGCAGAACGATGGCACAAGCTACCAGCCATCGGAGCCAAAGCTCTGCGCGAACAACTGCGGCTTCTTTGGTTCAGCCGGTACTGAGAATCTCTGCTCGAAGTGCTACAGAGACTCTCGAATCAAAGAAGAGCAAGCGGCTTCAGCAAAAGCAGCGATGGAGAAATCCCTTCAGTCCAAAATTTTAAAGCCGGCTGAAGGTAGTTCTCCAGTTGTCTTCTCCGATTCAACAGTGGATTCAGCTTCACCGTCATCTTCCACTGGAATCTCCCTCCGCAGTTCCAACAAATCCCCGTCACCGGATGTTCCAAACCGGTGCCGGAGCTGCAATAAGAAGGTGGGATTGATGGGCTTCAAGTGCAAGTGCGAGCGAACCTTCTGTGGAATTCACCGGTACCCAGAGAAACACGACTGTTGTTACGACTTCAAAAGTATTGGGCGGGAGGAGATCGCCACGGCCAATCCTGTGGTGAAGGCCGACAAGGTCGAAAGAGATATGTTGGTTACGATTGCCAGTAGTGTTCCATCTCATGGGGATTTATGA 552 51.09 MGSEQNDGTSYQPSEPKLCANNCGFFGSAGTENLCSKCYRDSRIKEEQAASAKAAMEKSLQSKILKPAEGSSPVVFSDSTVDSASPSSSTGISLRSSNKSPSPDVPNRCRSCNKKVGLMGFKCKCERTFCGIHRYPEKHDCCYDFKSIGREEIATANPVVKADKVERDMLVTIASSVPSHGDL 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3627240 3628502 + ClCG01G003490.1 Cla01g00337 263926

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00337 183 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 167 - -
Cla01g00337 183 SMART A20_3 16 40 IPR002653 GO:0003677|GO:0008270
Cla01g00337 183 Pfam AN1-like Zinc finger 109 144 IPR000058 GO:0008270
Cla01g00337 183 Gene3D - 1 64 - -
Cla01g00337 183 ProSiteProfiles Zinc finger A20-type profile. 13 47 IPR002653 GO:0003677|GO:0008270
Cla01g00337 183 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 1 1 167 - -
Cla01g00337 183 SUPERFAMILY AN1-like Zinc finger 98 163 IPR035896 -
Cla01g00337 183 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 18 60 - -
Cla01g00337 183 Pfam A20-like zinc finger 18 40 IPR002653 GO:0003677|GO:0008270
Cla01g00337 183 Gene3D - 82 164 IPR035896 -
Cla01g00337 183 ProSiteProfiles Zinc finger AN1-type profile. 103 149 IPR000058 GO:0008270
Cla01g00337 183 SMART AN1_Zf_4 109 146 IPR000058 GO:0008270
Cla01g00337 183 MobiDBLite consensus disorder prediction 70 106 - -
Cla01g00337 183 MobiDBLite consensus disorder prediction 73 106 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00337 - - - cmo:103482674 320.472
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g00337 Cla05g00813 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00337 Cla-Chr1:3627240 Cla09g00395 Cla-Chr9:3806647 2.81E-42 dispersed
Cla02g02157 Cla-Chr2:36656128 Cla01g00337 Cla-Chr1:3627240 4.15E-47 transposed
Cla04g00982 Cla-Chr4:24939276 Cla01g00337 Cla-Chr1:3627240 1.54E-31 transposed
Cla01g00337 Cla-Chr1:3627240 Cla05g00813 Cla-Chr5:7952220 1.54E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g460 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0728 . Csa05g00359 . . . . . . . . . . . . . . . . . . Cpe13g00197 Bhi12g00355 . . Lac11g2189 Hepe06g1619 . Lcy12g1743 Cla01g00337 Cam01g0350 Cec01g0346 Cco01g0358 Clacu01g0354 Cmu01g0334 Cre09g2176 Lsi09g00363 . . .
Vvi16g510 . . . . . . . . . . . Cma15g01177 . Car15g01065 . . . . . . . . . . Cla01g00337 Cam01g0350 Cec01g0346 Cco01g0358 Clacu01g0354 Cmu01g0334 Cre09g2176 . . . . Lsi05g01302 Csa05g00359 Chy09g01148 Cme06g00925 . . . . . . . . . . Cmo15g01238 . . . Car18g01105 Cpe09g00133 . Bhi12g00355 . . Lac11g2189 Hepe06g1619 . Lcy12g1743 Cla05g00813 Cam05g0896 . Cco05g0904 Clacu05g0887 Cmu05g0843 Cre05g0929 . Csa03g01639 . Cme09g01680
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005235 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 4 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00337 Cla_Chr01 FPKM 2.638861 3.310479 7.056217 6.546362 10.45173 9.804608 9.596372 15.226483 14.103065 16.312468