Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00338 ATGGCCGCTTCTGGGGGCACTAGTTATAGAAATGGCGCCACTTCCAGAAATTCACTTAAGCTCGATAAGCCCTTTTCTGCTAATTCCAACCCCAAGTCTTCTCTCAAGTCAAAGTCTCTTCCTAATTCTGCTCTTCGCCGCAGTAGCCCTGCATCTCTCGGAGCTGCCAAGGATGATGGTGCAGTTCCTGGAAGAGTTCGAGTGGCTGTTAGATTGCGACCACGCAATACAGAAGAATTGATAGCCGATGCTGATTTTGCTGATTGTGTAGAATTACAGCCAGAGCTTAAAAGGTTGAAACTTCGGAAGAACAACTGGGATTCAGATACTTATGAGTTTGATGAAGTGCTAACTGAGTTTGCATCTCAAAAACGTGTTTATGAAGTTGTGGCAAAACCTGTTGTGGAGAGTGTATTGGATGGCTACAATGGAACAATTATGGCATATGGACAAACTGGTACCGGTAAAACATATACTCTTGGAAGACTTGGAGAGGAAGACACCGCTGACCGTGGAATCATGGTGCGTGCTATGGAGGACATTTTGGCCGAAGTTTCTTTGGAGACGGATTCTGTCTCAGTATCCTACCTGCAGCTTTATATGGAGAGCATACAAGACCTTCTTGACCCTGCAAATGATAACATTTCCATTGTAGAAGATCCTAAAACTGGAGATGTATCAGTACCTGGAGCTAGCCTTGTAGAGATTAGACATCAGGAGAGCTTTGTGGAACTACTAAGATTGGGGGAAGCTCATCGGTTTGCTGCAAATACAAAACTGAATACTGAATCTTCTCGTAGTCATGCAATTCTCATGGTACACGTAAAGCGGTCTCTAAAAGGAAAGGATTCAACTCTATCAAGTGATATTGGTGGGAATTCTCATTTGGTTAAGACCTTGAAACCTCCAATCGTTCGTAAGGGAAAATTAGTGGTAGTGGATCTTGCTGGTTCTGAGCGTATTGACAAGTCAGGAAGTGAAGGACATACACTTGAAGAAGCCAAATCCATCAATCTCTCCCTGAGTGCGTTAGGGAAGTGCATAAATGCACTTGCTGAGAATAGTGCACACGTTCCAGTTAGGGATTCAAAGCTGACAAGATTACTTCGGGATTCATTTGGAGGAACAGCAAGAACTTCACTGGTTATTACTATTGGTCCTTCACCTCGACATCGTGGAGAGACTACGAGTACAATATCCTTCGGCCAACGGGCTATGAAGGTGGAAAATATGCTGAAGATAAAAGAAGAATTTGATTATAAAAGTTTGTCAAGAAGGTTGGACATTCAATTAGACAAACTGATTGCTGAACATGAAAGGCAGCAAAAGGCGTTTCAGAATGAAATTGAAAGAATTACCAAAGAAGCACAGGATCGCATATCTGAGGCTGAAAGAAGTCATTCAAATGCCCTGGAGAAGGAAAGGCTGAAATATCAGAAGGATTACATGGAATCGATCAAGAAGCTTGAAGATCAACTGATGGTGAAGCAGAAGAAGCTTGGTGGGGAGAAAGTAATTAATGAAGAAGTTGCTGCGTCTGCTTCTAGTGTAATTGCTAATGGAGAGGGTTTGATAGTGTCTGCTGACAAGGAAGTGGCAGAGCTAAAGAAGTTGGTTAAAAAGGAAACGCTTTTGAGGAAAGCAGCTGAAGAGGAAGTTAACAATCTTAGAAGTCAAGTAGCCCAACTGAAGAGATCAGAGACGTCATGCAATTCAGAGATCTCAAAGCTCCGCAAGACTCTAGAAGATGAACAAAATCAGAAAAAGAAACTAGAAGGAGATATAGCTATGCTACAAAGCCAGTTGTTGCAATTGAGCTTTGAAGCAGATGAGACCAGTAGGCGATTGGACAGAGGTGAGACTGGGAAAGTCCTCGGTTCTCTAGATTCTCTCGTGCAACAAGTTAAACAGTCACAGGCTCAGGACGCTGGAAATGGAGAGAAGGCTTCAGTGGCCAAACTCTTTGAGCAAGTGGGACTGCAAAAGATCTTGTCGTTGCTGGAAGCTGAGGATTACGACGTCAGAATACATGCTGTGAAAGTTGTTGCAAATCTTGCAGCTGAAGAAACAAATCAGCAAAAGATTGTTGAGGCTGGGGGCCTTTCTTCTTTGCTGATGCTACTCAGAAGCACTGAGGATGAGACAATACACAGAGTTGCTGCAGGTGCAATTGCAAATCTGGCAATGAATGAGACCAACCAAGAGCTCATTATGTCCCACGGAGGCATTAGCTTACTCTCCACGACCGCTGCCAATGCTGAGGATCCCCAAACTCTTCGTATGGTTGCTGGAGCAATCGCCAATTTGTGTGGCAATGATAAGTTGCAGACAAAGCTAAGGGGCGAAGGCGGTATTAAGGCATTGCTTGGTATGGTAAGATGCAAACATCCTGATGTTCTTGCACAAGTTGCTAGAGGAATTGCAAATTTTGCAAAGTGCGAGTCGAGGGCCTCTACACAAGGAACAGGGACCAAGGCTGGAAAGTCTTTCTTAATTGAAGATGGAGCACTCCCATGGATTGTACAGAATGCCAACAATGAAGCATCGACGATAAAACGACATATCGAACTTGCACTCTGTCATTTAGCACAACATGAAGTGAATGCAAAAGACATGATCAGTGGAGGTGCCCTGTGGGAACTAGTTCGGATATCGCGGGACTGTTCACGGGAAGACATAAGGACTCTTGCACATCGAACATTAATATCAAGTCCAACATTTCAAGCGGAAATGAGACGATTACGAATAGATTATTGA 2757 43.63 MAASGGTSYRNGATSRNSLKLDKPFSANSNPKSSLKSKSLPNSALRRSSPASLGAAKDDGAVPGRVRVAVRLRPRNTEELIADADFADCVELQPELKRLKLRKNNWDSDTYEFDEVLTEFASQKRVYEVVAKPVVESVLDGYNGTIMAYGQTGTGKTYTLGRLGEEDTADRGIMVRAMEDILAEVSLETDSVSVSYLQLYMESIQDLLDPANDNISIVEDPKTGDVSVPGASLVEIRHQESFVELLRLGEAHRFAANTKLNTESSRSHAILMVHVKRSLKGKDSTLSSDIGGNSHLVKTLKPPIVRKGKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINALAENSAHVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETTSTISFGQRAMKVENMLKIKEEFDYKSLSRRLDIQLDKLIAEHERQQKAFQNEIERITKEAQDRISEAERSHSNALEKERLKYQKDYMESIKKLEDQLMVKQKKLGGEKVINEEVAASASSVIANGEGLIVSADKEVAELKKLVKKETLLRKAAEEEVNNLRSQVAQLKRSETSCNSEISKLRKTLEDEQNQKKKLEGDIAMLQSQLLQLSFEADETSRRLDRGETGKVLGSLDSLVQQVKQSQAQDAGNGEKASVAKLFEQVGLQKILSLLEAEDYDVRIHAVKVVANLAAEETNQQKIVEAGGLSSLLMLLRSTEDETIHRVAAGAIANLAMNETNQELIMSHGGISLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQTKLRGEGGIKALLGMVRCKHPDVLAQVARGIANFAKCESRASTQGTGTKAGKSFLIEDGALPWIVQNANNEASTIKRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLISSPTFQAEMRRLRIDY 918
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3640539 3650236 + ClCG01G003500.2 Cla01g00338 263927

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00338 918 Gene3D Kinesin motor domain 57 438 IPR036961 -
Cla01g00338 918 Pfam Armadillo/beta-catenin-like repeat 691 728 IPR000225 GO:0005515
Cla01g00338 918 Gene3D - 752 904 IPR011989 -
Cla01g00338 918 SMART kinesin_4 63 416 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla01g00338 918 ProSiteProfiles Kinesin motor domain profile. 65 408 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla01g00338 918 Pfam Kinesin motor domain 71 408 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla01g00338 918 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 444 IPR027417 -
Cla01g00338 918 PANTHER KINESIN-LIKE PROTEIN KIN-UA 47 910 IPR033291 GO:0008017|GO:0032886|GO:0048364
Cla01g00338 918 SMART arm_5 688 729 IPR000225 GO:0005515
Cla01g00338 918 SMART arm_5 772 812 IPR000225 GO:0005515
Cla01g00338 918 SMART arm_5 648 687 IPR000225 GO:0005515
Cla01g00338 918 SMART arm_5 730 771 IPR000225 GO:0005515
Cla01g00338 918 Gene3D - 626 751 IPR011989 -
Cla01g00338 918 CDD KISc 65 406 - -
Cla01g00338 918 Coils Coil 532 566 - -
Cla01g00338 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 658 700 IPR000225 GO:0005515
Cla01g00338 918 MobiDBLite consensus disorder prediction 1 58 - -
Cla01g00338 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 699 742 IPR000225 GO:0005515
Cla01g00338 918 ProSitePatterns Kinesin motor domain signature. 308 319 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cla01g00338 918 SUPERFAMILY ARM repeat 649 901 IPR016024 -
Cla01g00338 918 MobiDBLite consensus disorder prediction 1 49 - -
Cla01g00338 918 PRINTS Kinesin heavy chain signature 309 327 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla01g00338 918 PRINTS Kinesin heavy chain signature 141 162 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla01g00338 918 PRINTS Kinesin heavy chain signature 358 379 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla01g00338 918 PANTHER KINESIN-RELATED 47 910 IPR027640 GO:0003777|GO:0007018
Cla01g00338 918 Coils Coil 479 499 - -
Cla01g00338 918 Coils Coil 431 473 - -
Cla01g00338 918 Coils Coil 574 601 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00338 - - K10396 csv:101209471 1632.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00338 Cla-Chr1:3640539 Cla08g00785 Cla-Chr8:20264832 1.16E-92 dispersed
Cla01g00338 Cla-Chr1:3640539 Cla05g00230 Cla-Chr5:2055758 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g462 . . Bda06g00057 . . . Bma07g01621 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00360 . . . . . Bda09g00070 . . . . . . . . . . . . Cpe13g00198 Bhi12g00357 . . . . . Lcy12g1744 Cla01g00338 Cam01g0351 Cec01g0347 Cco01g0359 Clacu01g0355 Cmu01g0335 Cre09g2175 Lsi09g00364 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001054 3 5 3 2 3 2 5 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 5 2 3 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00338 Cla_Chr01 FPKM 11.309941 11.748258 11.193163 12.85601 11.608109 13.191787 12.68245 14.638176 15.860576 14.925758