Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla01g00339 | ATGGATTCCCACTCCCTTCCCCCTCCTTTCCACACCCGTGATTTCCATCTCCAACCACACCAATTCCACAACAACAATAACAACAATTCCGAAGAAGAACATAGCACCACCACCACCCGCCTCAAGCGCGACCGCGATGACGACGACCACCACACCAACAACTCCAACCCCAACAGCGCTGGCGATGGTGTCCCCGGCTCCACCGACGGAGAAATCACTCGGCGTCCTAGAGGTAGACCTGCTGGATCCAAAAACAAACCCAAACCCCCCATTATTATTACTCGCGACAGCGCTAACGCCCTTCGTACCCACGTCATCGAAGTCACCGACGGCTGCGATATCGTCGACAGCGTCGCTACCTTCGCTCGTCGACGACAACGTGGCGTTTGTATTATGAGTGGTACTGGTACTGTCACCAACGTCACTCTACGTCAACCTGCTTCCCCCGGTGCAATTGTCAACTTACATGGCCGGTTCGAGATCTTATCTCTCGCCGGTTCTTTTCTTCCTCCTCCCGCTCCTCCAGCTGCTACTACTTTAACTATTTATCTCGCTGGCGGTCAAGGTCAAGTCGTCGGCGGTAGCGTCGTTGGTACTTTAATCGCTTCTGGTCCTGTCGTAATCATGGCTGCCTCCTTTAGTAACGCTGCTTATGAACGGCTTCCGTTGGAGGATGACGATCAGCCGCCGCTTCCGTCGCTACAAGGCGGCGGCGGAATTGGGTCACCGGATGAAGTTGGACAGTCTCAAACAGCGCAAACGGCGCATCATCAGCAGAATCAACAACAACAGCAACTTCTTAGCGACGGAAATGCGCCGTTATTTCACGGTTTGCCTCCGAATCTCTTGAATTCAATTCAAATGCCACCGTCTGAAGCAGCGTATTGGGCAACTGCCCGACCTCCGTACTAA | 912 | 53.62 | MDSHSLPPPFHTRDFHLQPHQFHNNNNNNSEEEHSTTTTRLKRDRDDDDHHTNNSNPNSAGDGVPGSTDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATTLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEDDDQPPLPSLQGGGGIGSPDEVGQSQTAQTAHHQQNQQQQQLLSDGNAPLFHGLPPNLLNSIQMPPSEAAYWATARPPY | 303 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 3653470 | 3654381 | - | ClCG01G003510.1 | Cla01g00339 | 263928 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla01g00339 | 303 | MobiDBLite | consensus disorder prediction | 35 | 53 | - | - | |
| Cla01g00339 | 303 | Gene3D | - | 101 | 229 | - | - | |
| Cla01g00339 | 303 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 3 | 303 | IPR014476 | GO:0003680 | |
| Cla01g00339 | 303 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED | 3 | 303 | - | - | |
| Cla01g00339 | 303 | MobiDBLite | consensus disorder prediction | 223 | 283 | - | - | |
| Cla01g00339 | 303 | MobiDBLite | consensus disorder prediction | 19 | 34 | - | - | |
| Cla01g00339 | 303 | ProSiteProfiles | PPC domain profile profile. | 98 | 237 | IPR005175 | - | |
| Cla01g00339 | 303 | MobiDBLite | consensus disorder prediction | 244 | 270 | - | - | |
| Cla01g00339 | 303 | PIRSF | ESCAROLA | 12 | 303 | IPR014476 | GO:0003680 | |
| Cla01g00339 | 303 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 98 | 229 | - | - | |
| Cla01g00339 | 303 | CDD | DUF296 | 102 | 168 | IPR005175 | - | |
| Cla01g00339 | 303 | MobiDBLite | consensus disorder prediction | 1 | 93 | - | - | |
| Cla01g00339 | 303 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 102 | 215 | IPR005175 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g00339 | Cla-Chr1:3653470 | Cla05g00274 | Cla-Chr5:2486749 | 5.91E-89 | dispersed | |
| Cla11g00643 | Cla-Chr11:7363514 | Cla01g00339 | Cla-Chr1:3653470 | 3.00E-49 | dispersed | |
| Cla01g00339 | Cla-Chr1:3653470 | Cla05g00231 | Cla-Chr5:2071941 | 1.74E-68 | wgd | |
| Cla01g00339 | Cla-Chr1:3653470 | Cla06g00029 | Cla-Chr6:337812 | 6.44E-90 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla01g00339 | - | - | csv:101209716 | 446.817 |