Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00342 ATGGAGGGAAGGGATGGTGGTGGCGCAAGTAGTGGGGTTACTGTGGTAGGATCAGATGCTCCGTCGGAGTACAAAATAGCTCCGAGGACCTCCGATAACCCACCGCAGACTGGTGGATCAACGCCGCCGCCGGCGACTCAATCAACTTCGACGCCGTCGGCTTCAGCTCAAGTAACTGCGCAGCCTCCGCCGCCTACGGCGGCCTCCTCAGTACCGGGAAAGAAGAAAAGAGGGAGACCCAGAAAATATGGACCCGATGGCTCTGTTTCTATGGCTCTGTCTCCCAAGCCGATATCGTCATCAGTGCCGCCGCCGGTGATCGACTTCTCGACGGAGAAGAAGGGGAAAGTACGGCCGGCGAGCGCTGTGAGTAAAAGCAAGTTCGAAGTGGATAATTTAGGCGACTGGGTTCCATGTTCTGTTGGTGGAAATTTTACACCTCATATCATCACTGTCAATGCAGGGGAGGATGTCACCATGAAGATTATATCCTTTTCTCAACAAGGGCCTCGAGCCATATGCATTTTATCTGCGAACGGTGTGATCTCAAGTGTCACTCTTCGTCAGCCTGATTCATCTGGAGGAACACTAACTTATGAGTTCAGTTATGCTGTAATCAGCCAATCCTGTTTAAGAGTTGATTCATGGGAGTTCACTGGATACCTGAATGGCGAAATATCTCATATTGATCTTCGTTCACAGGGACGCTTTGAAATACTTTCCTTGTCTGGCTCATTCATGCCTAGTGACAACGGAGGAACTAGAAGTAGATCTGGTGGAATGAGTGTTTCCTTAGCAAGTCCAGATGGGCGTGTCGTAGGCGGTGGAGTAGCTGGTCTATTAGTAGCTGCAAGTCCTGTTCAGGTTGTAGTAGGGAGTTTTCTATCTGGAAATCAACACGAGCAGAAACCGAAAAAGCCAAAACATGATACTATTTCACCGGCCCCGCCAACTGCTGCCATTCCAATATCTTGCGTTGATCCTAAGTCCAACCTCTCACCTTCCAGTTCCTTTCGTGGCGATAACTGGTCAATGCTGCCAACTGATTCAAGGAATAAGTCAACTGATATCAATGTATCCCTACCCAGTGCTTGA 1095 49.41 MEGRDGGGASSGVTVVGSDAPSEYKIAPRTSDNPPQTGGSTPPPATQSTSTPSASAQVTAQPPPPTAASSVPGKKKRGRPRKYGPDGSVSMALSPKPISSSVPPPVIDFSTEKKGKVRPASAVSKSKFEVDNLGDWVPCSVGGNFTPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEFSYAVISQSCLRVDSWEFTGYLNGEISHIDLRSQGRFEILSLSGSFMPSDNGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKKPKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3726056 3729848 + ClCG01G003540.1 Cla01g00342 263931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00342 364 MobiDBLite consensus disorder prediction 328 364 - -
Cla01g00342 364 MobiDBLite consensus disorder prediction 298 364 - -
Cla01g00342 364 MobiDBLite consensus disorder prediction 29 64 - -
Cla01g00342 364 Pfam Plants and Prokaryotes Conserved (PCC) domain 147 294 IPR005175 -
Cla01g00342 364 CDD DUF296 146 271 IPR005175 -
Cla01g00342 364 SUPERFAMILY AF0104/ALDC/Ptd012-like 144 299 - -
Cla01g00342 364 ProSiteProfiles PPC domain profile profile. 142 315 IPR005175 -
Cla01g00342 364 MobiDBLite consensus disorder prediction 1 113 - -
Cla01g00342 364 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 231 362 IPR039605 GO:0003680
Cla01g00342 364 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 10 208 IPR039605 GO:0003680
Cla01g00342 364 Gene3D - 147 310 - -
Cla01g00342 364 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 231 362 - -
Cla01g00342 364 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 10 208 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00342 Cla-Chr1:3726056 Cla01g00501 Cla-Chr1:5399596 1.23E-76 dispersed
Cla11g00044 Cla-Chr11:568389 Cla01g00342 Cla-Chr1:3726056 8.95E-119 transposed
Cla01g00342 Cla-Chr1:3726056 Cla05g00236 Cla-Chr5:2141901 1.72E-95 wgd
Cla01g00342 Cla-Chr1:3726056 Cla05g00810 Cla-Chr5:7912041 1.15E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00342 - - csv:101210208 519.235