Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00344 ATGACATTGGTAAGGATAACAAAGTTGAAGAGAAGTGAAAAGAGAAAGGCGTTTCAGTTGCATCCTACCCTTCGTGCATGCGGACATAAAGAAGTGCTTCCAGTTCTTATGCTCGCTTCCGAGCTAAAAGTCCTCTTGAACCGCTCTGTAAATGTTAAGCAAGCTACTCAAATTCATGCCTACATTCTCGTCAATGGGCTTCCAAATCTCGAATCTTGCTTGGTCCGTCAAATCACTCGTTCTGAGTTCACTTGCGCCAGAATCGTATCCCGTTATCTCCAACGAATTCTTCACCATTCGCAAAACCCAGATGCTTTCACATGGGCCTGCGCCGTTCGGTTCTTTTCCCAGAATGGCCACTTTATGGAAGCAATCGCCCATTATGTTCAGATGCAAAGATTGGGACTGCATCCCAGCACTTTTGCTGTATCCTCGACTTTGAGAGCTTGTGGTAGGATTATGTGTAAGTTTGGTGGGAGCTATGTTCACACTCAGGTTTATAAGTTGGGGTTTTGTCGCTGTGTTTACGTGCAAACTGCCCTTCTGGATTTTTACTCAAAATTGGGTGATATGGGTTTTGCACAGAAGGTGTTTGATGATATGACTGAGAAAAATGTGGTTTCATGGAACTCGATCTTGTCTGGTTATGTGAAAATTGGGAACTTAGTTGATGCTCAGAAAGTGTTTGATGTAATGCCTGTGAAAGATGTCATATCTTGGAATTCGATGTTGACGGGATTCGCCAATTCTGGAAATATGGATCGAGCGTGGTGTTTATTTCAACAAATGGGGGAGAAAAGTTCGGCTTCTTGGAATGCAATGATCAGTGGCTACGTGAACTGTGGAGACATGAAGTCTGCGAGAAAGTTGTTTGATGTAATGCCTAATAGGAATAATGTTTCACGGATTACATTGATTGCTGGTTATTCGAAGCTTGGGGAGGTTAATTCTGCTTGTGAGCTATTTGATAAGATGGGTGAGAAGGAGCTTCTCTCATTTAATGCCATGATTGCTTGCTATTCACAAAATAGTCTGCCTAACAAAGCATTGGAGTTATTCAACCAAATGCTTCAACCCCATGTGAATATCCAACCCGATGAGATGACTTTTGCTAGCATTATATCTGCTTGTACTCAACTGGGAAATATGAATTATGGTACTTGGATTGAGTCGTATATGGAAAAACTTGGAATTGAGTTGGATGATCATTTGGCGACTGCATTAGTAGATCTATATGCAAAAACCGGGAATATCGAAAGGGCGATCGAGCTGTTCAATGGTCTGAAAAAGAGGGATTTAGTCGCTTATTCAGCTATGATCTTTGGATGTGGGATAAATGGTAAGGCGTATGAAGCAATAAGGTTATTCAAAGAGATGCTAAGAGTTAACATCTCCCCTAATCTAGTGACGTATGCCGGTCTTCTTACAGCGTATAACCATGCTGGTTTAGTTGATGAAGGTTACCTTTGCTTCTCATCCATGAAGGACCATGGACTTGAGGCAATGGCCGATCATTATGGAATCATGGTGGATTTGTTGGGCAGGGCAGGGTGGTTAGAAGAAGCATATGAGCTTATACAGAGTATGCCAGTGCAGCCAAATGCTGGTGTTTGGGGAGCCTTGCTTCATGCTTGTAAATTACATAACAATGTTGAGCTTGGTGAGATAGCAGCTCGTAATTGCTCAAAGTTAGTGACTGATACAACCGGATATCGGTCTCTTCTAGCCAACATTTACTCTTCTATGGAGAGGTGGGATGATGCTAAGAGGCTGAGAAAAGCCATGGGAAATAAAGTATTTGCCAATATATCTGGTTGTAGTTGGATAGAGCAATTAGAAAGCTGA 1845 42.11 MTLVRITKLKRSEKRKAFQLHPTLRACGHKEVLPVLMLASELKVLLNRSVNVKQATQIHAYILVNGLPNLESCLVRQITRSEFTCARIVSRYLQRILHHSQNPDAFTWACAVRFFSQNGHFMEAIAHYVQMQRLGLHPSTFAVSSTLRACGRIMCKFGGSYVHTQVYKLGFCRCVYVQTALLDFYSKLGDMGFAQKVFDDMTEKNVVSWNSILSGYVKIGNLVDAQKVFDVMPVKDVISWNSMLTGFANSGNMDRAWCLFQQMGEKSSASWNAMISGYVNCGDMKSARKLFDVMPNRNNVSRITLIAGYSKLGEVNSACELFDKMGEKELLSFNAMIACYSQNSLPNKALELFNQMLQPHVNIQPDEMTFASIISACTQLGNMNYGTWIESYMEKLGIELDDHLATALVDLYAKTGNIERAIELFNGLKKRDLVAYSAMIFGCGINGKAYEAIRLFKEMLRVNISPNLVTYAGLLTAYNHAGLVDEGYLCFSSMKDHGLEAMADHYGIMVDLLGRAGWLEEAYELIQSMPVQPNAGVWGALLHACKLHNNVELGEIAARNCSKLVTDTTGYRSLLANIYSSMERWDDAKRLRKAMGNKVFANISGCSWIEQLES 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3741072 3743012 - ClCG01G003560.1 Cla01g00344 263933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00344 614 Pfam PPR repeat 238 266 IPR002885 -
Cla01g00344 614 Pfam PPR repeat 179 206 IPR002885 -
Cla01g00344 614 Pfam PPR repeat 505 529 IPR002885 -
Cla01g00344 614 Pfam PPR repeat 304 328 IPR002885 -
Cla01g00344 614 Pfam PPR repeat 207 235 IPR002885 -
Cla01g00344 614 Pfam PPR repeat 270 297 IPR002885 -
Cla01g00344 614 PANTHER OS07G0578800 PROTEIN-RELATED 202 265 IPR045215 GO:0003723|GO:0009451
Cla01g00344 614 TIGRFAM PPR: pentatricopeptide repeat domain 469 500 IPR002885 -
Cla01g00344 614 TIGRFAM PPR: pentatricopeptide repeat domain 406 434 IPR002885 -
Cla01g00344 614 TIGRFAM PPR: pentatricopeptide repeat domain 207 234 IPR002885 -
Cla01g00344 614 TIGRFAM PPR: pentatricopeptide repeat domain 332 357 IPR002885 -
Cla01g00344 614 TIGRFAM PPR: pentatricopeptide repeat domain 304 327 IPR002885 -
Cla01g00344 614 TIGRFAM PPR: pentatricopeptide repeat domain 270 297 IPR002885 -
Cla01g00344 614 TIGRFAM PPR: pentatricopeptide repeat domain 434 467 IPR002885 -
Cla01g00344 614 TIGRFAM PPR: pentatricopeptide repeat domain 238 265 IPR002885 -
Cla01g00344 614 SUPERFAMILY TPR-like 307 590 IPR011990 GO:0005515
Cla01g00344 614 PANTHER OS08G0162200 PROTEIN 202 265 - -
Cla01g00344 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 235 IPR002885 -
Cla01g00344 614 Gene3D Tetratricopeptide repeat domain 46 158 IPR011990 GO:0005515
Cla01g00344 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Cla01g00344 614 Pfam E motif 548 610 IPR046848 -
Cla01g00344 614 Gene3D Tetratricopeptide repeat domain 232 299 IPR011990 GO:0005515
Cla01g00344 614 Gene3D Tetratricopeptide repeat domain 391 481 IPR011990 GO:0005515
Cla01g00344 614 Gene3D Tetratricopeptide repeat domain 162 231 IPR011990 GO:0005515
Cla01g00344 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
Cla01g00344 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Cla01g00344 614 PANTHER OS08G0162200 PROTEIN 265 610 - -
Cla01g00344 614 PANTHER OS08G0162200 PROTEIN 92 201 - -
Cla01g00344 614 Gene3D Tetratricopeptide repeat domain 482 611 IPR011990 GO:0005515
Cla01g00344 614 Gene3D Tetratricopeptide repeat domain 300 390 IPR011990 GO:0005515
Cla01g00344 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Cla01g00344 614 Pfam PPR repeat family 332 377 IPR002885 -
Cla01g00344 614 Pfam PPR repeat family 432 478 IPR002885 -
Cla01g00344 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 104 138 IPR002885 -
Cla01g00344 614 PANTHER OS07G0578800 PROTEIN-RELATED 265 610 IPR045215 GO:0003723|GO:0009451
Cla01g00344 614 PANTHER OS07G0578800 PROTEIN-RELATED 92 201 IPR045215 GO:0003723|GO:0009451
Cla01g00344 614 SUPERFAMILY TPR-like 105 301 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00344 - - - csv:101219504 1072.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00344 Cla-Chr1:3741072 Cla05g00242 Cla-Chr5:2205782 3.35E-126 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g473 . . . . . . . Bma14g00564 . . . Cma15g01168 . Car15g01057 . . . . . . . . . . . . . . . . . . . . . . Csa05g00369 Chy09g01141 . Blo03g00389 . Bda07g00518 . . Bpe11g00705 . . . . Cmo15g01230 . . . . . . Bhi12g00368 . . Lac11g2208 Hepe06g1629 . . Cla01g00344 . . . . . . . . . Cme09g01672
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010341 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00344 Cla_Chr01 FPKM 17.991335 20.946266 51.026634 50.105148 90.99585 100.564552 87.85392 63.516506 63.562092 61.987514