Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00346 ATGGCATCATCCCTCTCGAATTCTGTTCAATCGGGTCGGATTAGGATTCTGAAAGATGGAACCGGTTCTGTTGGTCCGGTGGTTTATTGGATGTTCAGAGATCAACGGGTGAAAGACAATTGGGCTTTGATACACGCTGTTGATGAAGCCAACAGAGCCAATGTCCCTGTTGCTGTTGCCTTCAATTTGTTCGATCGATTTTTGGGGGCGAAATCTCGGCAATTAGGGTTTATGCTTAGGGGTCTGCAACAACTTCAACATGATCTTCAAGAAATGCTTCAATTTTCAGGGTTGGCGTTCCTTAAGGGGGAAGCTGAACAGACTATACCAAATTTCATTAGAGAATGTGGGGCTTCACTTCTAGTCACAGACTTCTCACCCTTAAGAGAAGTTCGGAAGTGTAAAGAGGAAATTTGTAAGAGGGTAGAGGAATCAGTTAAAGTACATGAAGTTGATGCCCACAATGTGGTGCCCATTTGGGTTGCATCCGAGAAATTGGAGTACAGTGCAAAAACTTTAAGGGGCAAGATAAATAAAAAGCTCCCGGATTACCTTATTGATTTCCCTCCTGTGGTCATACCAACTAGAAAATGGCTTTCCTCTGATAAGTTTATTGATTGGGATAAACTTATTGATGATAACTTGAGGAAAGGAGCAGATGTTCCTGAAATTGAATGGTGTAAACCAGGGGAAAAGGCTGCACTGGAAGTATTGATGGGTAGTAAAGATGGGTTTTTGACTAAGAGATTGAAGGGCTATGCAATAGACCGGAACAATCCATTGAAACCTAAGGGGCTCTCTGGCCTCTCCCCATATTTGCATTTTGGCCAAATATCTGCACAACGTTGTGCTTTGGAAGCACGCAGTGTTCGAAAACTCAATCCACAGGCAGTTGATGTTTTTCTTGAGGAGTTGATTGTTAGAAGGGAACTTGCTGATAATTACTGCTACTACCAACCTCACTATGATTCACTGCTTGGGGCTTGGGAATGGGCACGTAAAACCTTGATGGACCATGCTTCCGATAAGCGAGAACATATTTACACGAGGGAGCAACTGGAGAAGGCGCAAACTGCTGACCCGCTCTGGAATGCTTCTCAGTTGGAGATGGTCTTCCATGGAAAGATGCATGGTTTTATGAGGCGAGTATTGATGCATTTTCCAGTCAAAGTATTGTTTTATGATATTTTCCAAATGGTGATTAATTGTGTCAAATTATATTATATCAAATCCTTTATTTTCTGCTTGAAACATTTTTGTTCTCTTTTTCTCTTTCTTTGTCCTTTTATGTTAATTTTCTGCTCCCAAAGCCCTGGAATGATGTACTGGGCCAAAAAGATTTTGGAGTGGACAAGAGGACCTGAGGAAGCCCTTGAAATTTGCATATACTTGAATGACAAGTATGAAATCGATGGGAGGGATCCAAATGGATACGTTGGGTGCATGTGGTCAATCTGTGGCGTTCACGACCAGGGTTGGAAAGAGCGACCAGTATTTGGGAAGATACGGTACATGAACTTCGCTGGATGCAAGAGGAAATTTGATGTGGATGGCTACATTGCCTATGTCAAGAGACTTGTGGGTGAAATCAAGAAAAGAAAACCAGAGGAAGCTCTGCATGATAGAAAGCCAAAGGGAATTCGTTGCTAG 1650 42.42 MASSLSNSVQSGRIRILKDGTGSVGPVVYWMFRDQRVKDNWALIHAVDEANRANVPVAVAFNLFDRFLGAKSRQLGFMLRGLQQLQHDLQEMLQFSGLAFLKGEAEQTIPNFIRECGASLLVTDFSPLREVRKCKEEICKRVEESVKVHEVDAHNVVPIWVASEKLEYSAKTLRGKINKKLPDYLIDFPPVVIPTRKWLSSDKFIDWDKLIDDNLRKGADVPEIEWCKPGEKAALEVLMGSKDGFLTKRLKGYAIDRNNPLKPKGLSGLSPYLHFGQISAQRCALEARSVRKLNPQAVDVFLEELIVRRELADNYCYYQPHYDSLLGAWEWARKTLMDHASDKREHIYTREQLEKAQTADPLWNASQLEMVFHGKMHGFMRRVLMHFPVKVLFYDIFQMVINCVKLYYIKSFIFCLKHFCSLFLFLCPFMLIFCSQSPGMMYWAKKILEWTRGPEEALEICIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNFAGCKRKFDVDGYIAYVKRLVGEIKKRKPEEALHDRKPKGIRC 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3803998 3807413 + ClCG01G003610.2 Cla01g00346 263935

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00346 549 Gene3D HUPs 7 153 IPR014729 -
Cla01g00346 549 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 441 536 IPR036134 -
Cla01g00346 549 Gene3D - 154 324 - -
Cla01g00346 549 Pfam DNA photolyase 27 187 IPR006050 -
Cla01g00346 549 PANTHER DEOXYRIBODIPYRIMIDINE PHOTOLYASE 441 540 - -
Cla01g00346 549 PANTHER DEOXYRIBODIPYRIMIDINE PHOTOLYASE 7 381 - -
Cla01g00346 549 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 325 394 - -
Cla01g00346 549 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 436 534 - -
Cla01g00346 549 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 25 159 IPR006050 -
Cla01g00346 549 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 26 213 IPR036155 -
Cla01g00346 549 ProSitePatterns DNA photolyases class 2 signature 2. 487 506 IPR032673 -
Cla01g00346 549 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 215 395 IPR036134 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00346 K01669 phr, PHR1; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] - mnt:112093873 766.148
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g476 . . . . . . . Bma14g00015 . . . . Car02g01268 . . . . . . . . . . . . . . . . . . . . Cone6ag0716 Cone9ag0717 . Csa05g00371 . . Blo03g00391 . . . . Bpe11g00249 . . . Cmo02g01547 . . . . . . Cpe13g00206 Bhi12g00370 . . Lac11g2214 Hepe06g1631 . Lcy12g1755 Cla01g00346 Cam01g0362 Cec01g0358 Cco01g0371 Clacu01g0365 Cmu01g0345 Cre09g2164 Lsi09g00373 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012469 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00346 Cla_Chr01 FPKM 11.668427 14.061491 4.481826 4.50973 6.440946 8.598207 6.893455 14.490849 14.448474 16.230579