Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00349 ATGAAGCTCGTTTGGTCACCTGAGACGGCTTCCAAAGCCTACATCGACACCGTTCAATCTTTTTGTGTGAAGTGTGATCTTCATCAAGAATCCGGCGTTGCGGAACTGATCTCAGCGATGGCGGCGGGATGGAGCGCACAATTTATTGTGGAGACGTGGTCGAGCGGCGGAGCGATTGCGACGAGTATAGGTCTGGCGGTGGCTCGACGTCACGTCGGAGGGAGACACGTGTGTTTGGTTCCTGATGAGAGATCGAGGGGAGAATATTCGAGAGCGATGGAGAGAGCGGGATTAGCGCCGGAAGTGATCGTCGGAGAGCCGGAGGAGGTTATGGAAGGATTAGTAGGTATAGATTTTCTTGTGGTGGATAGTCAGAGGAGGAATTTCAGTCGAGTTTTGAAACTCGCGAATCTGAGTTCTAGAGGCGCAGTTTTGATTTGCAAGAACGCGAACTCGAGAACCGATTCGAGTTTCAGATGGAAAAGTGTTATCGACAACGGAACACGGCGGCTGGTTCGATCGGCATTTCTGCCGGTGGGAAAGGGTTTGGATATAGCACACGTGGCGGCGGCAGGAGGGAATTCAGGTACCGGCGGAGGGAAGGGAAAATGGATCAAGCATGTTGATCGACGGTCGGGGGAGGAGTTTGTAATTCGGAAGTGA 663 52.49 MKLVWSPETASKAYIDTVQSFCVKCDLHQESGVAELISAMAAGWSAQFIVETWSSGGAIATSIGLAVARRHVGGRHVCLVPDERSRGEYSRAMERAGLAPEVIVGEPEEVMEGLVGIDFLVVDSQRRNFSRVLKLANLSSRGAVLICKNANSRTDSSFRWKSVIDNGTRRLVRSAFLPVGKGLDIAHVAAAGGNSGTGGGKGKWIKHVDRRSGEEFVIRK 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3837691 3838735 - ClCG01G003640.1 Cla01g00349 263938

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00349 220 Pfam Protein of unknown function (DUF1442) 1 220 IPR009902 -
Cla01g00349 220 Gene3D Vaccinia Virus protein VP39 8 190 IPR029063 -
Cla01g00349 220 PANTHER DUF1442 FAMILY PROTEIN 1 220 IPR009902 -
Cla01g00349 220 PANTHER ANKYRIN REPEAT/KH DOMAIN PROTEIN (DUF1442) 1 220 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00349 - - - csv:101211926 399.438
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00349 Cla-Chr1:3837691 Cla05g00241 Cla-Chr5:2193873 1.14E-79 wgd
Cla01g00349 Cla-Chr1:3837691 Cla05g00808 Cla-Chr5:7880124 1.47E-14 wgd
Cla01g00349 Cla-Chr1:3837691 Cla06g00038 Cla-Chr6:424920 8.36E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g481 . . . . . . . . Cmo06g01164 . . Cma15g01164 . Car15g01052 . . . . . . . . . . . . . . . . . . Cone12ag0356 Cone6ag0711 . . Csa05g00376 Chy09g01136 . Blo03g00394 . Bda07g00021 . . Bpe11g00252 . . . . Cmo15g01226 Cma06g01139 . Car06g00977 . Cpe08g00483 Cpe13g00209 Bhi12g00374 . . . . . . Cla01g00349 Cam01g0365 Cec01g0361 Cco01g0375 Clacu01g0368 Cmu01g0348 Cre09g2162 Lsi09g00376 . . Cme09g01667
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006968 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 3 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00349 Cla_Chr01 FPKM 0.118146 0.242592 0.0 0.114983 0.196271 0.310461 0.0 0.498027 0.519499 0.638958
Cla01g00349 Cla_Chr00 FPKM 0.289509 0.389392 0.172763 0.251869 0.834381 0.513024 0.914781 1.47409 1.467395 1.634082
Cla01g00349 Cla_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.473099 0.0 0.678908 0.675272 1.002968
Cla01g00349 Cla_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Cla01g00349 Cla_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0