Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00366 ATGGCACTTTCTTCCATTTTCTCACTATCAGTAAAATGTCTACCCTTATCTTCTTCTAAATCAAAGCTTCCGAGTTCTCTACAACCCAGAAAACAAATTGCCCTGGTCTCTCAAACAAACCCACAAAAGGATCAAATTCAAGATTGTTCGGACAGGAAGCACATTGGTAAGATTACAGAGCCCAAGAGATGGCAAAAGTTGGCTTCAACTGCTTTGGCTGCTGCTGCAGTCATTAGTTTTAGCTCAGGCATGCCTTCAGTTGCTGAACTCAACAAGTATGAGGCTGATACCCGTGGTGAATTCGGAATTGGATCTGCCGCTCAATTTGGTTCTGCAGATCTCAGGAAAGCAGTGCATGTTAACGAAAATTTCAGGAGAGCCAATTTCACATCTGCTGATATGAGGGAATCAGATTTCAGCGGCTGTACATTCAACGGCGCATATCTTGAAAAAGCTGTTGCATACAAGACAAATTTCTCAGGTGCTGATTTGAGCGATACATTGATGGATCGTATGGTATTAAATGAGGCAAATTTTACAAATGCAGTACTAGTTAGATCAGTGTTGACACGGAGCGATTTAGGCGGTGCCATAATTGTAGGTGCGGACTTTAGTGACGCCGTTATTGACCTTCCTCAGAAGCAAGCACTTTGCAAGTATGCGAGTGGGACGAACCCAGTGACGGGAGTGAGCACGAGGGCGAGCTTAGGGTGCGGAAACAGCCGTAGAAATGCGTACGGAACGCCGTCGTCTCCTCTGCTCAGCGCACCGCCGCAGCAGCTGCTTGACCGCGACGGTTTCTGCGACCAAGGCACTGGCCTTTGTGAGGCCACTAAATAG 840 46.79 MALSSIFSLSVKCLPLSSSKSKLPSSLQPRKQIALVSQTNPQKDQIQDCSDRKHIGKITEPKRWQKLASTALAAAAVISFSSGMPSVAELNKYEADTRGEFGIGSAAQFGSADLRKAVHVNENFRRANFTSADMRESDFSGCTFNGAYLEKAVAYKTNFSGADLSDTLMDRMVLNEANFTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4033588 4037191 - ClCG01G003790.1 Cla01g00366 263955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00366 279 SUPERFAMILY Pentapeptide repeat-like 108 207 - -
Cla01g00366 279 Pfam Pentapeptide repeats (8 copies) 107 146 IPR001646 -
Cla01g00366 279 Pfam Pentapeptide repeats (8 copies) 174 206 IPR001646 -
Cla01g00366 279 PANTHER THYLAKOID LUMENAL PROTEIN TL20.3, CHLOROPLASTIC 18 277 - -
Cla01g00366 279 Gene3D - 103 246 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00366 - - - csv:101214507 481.485
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00366 Cla-Chr1:4033588 Cla11g00641 Cla-Chr11:7351065 2.25E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g494 . . . . . . . . . . . Cma15g01150 . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00394 Chy09g01119 . . . . . . Bpe11g00258 . . . . Cmo15g01210 . . . . . Cpe13g00218 Bhi12g00404 . . . . . . Cla01g00366 Cam01g0387 Cec01g0380 Cco01g0398 Clacu01g0386 Cmu01g0367 Cre09g2143 Lsi09g00396 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006392 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 2 1 2 2 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00366 Cla_Chr01 FPKM 8.500236 7.979544 9.817296 9.57896 8.135903 6.888113 8.247447 12.847309 12.308103 14.450602