Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00368 ATGTCATCTTCTTCATCTTCTTCTTCTCCTACTTCTACTACTACTGCTACCACTACGACTACGTTATCTCAACAACAACACCTGCAACAGCAGCTGGACCACCACCTTCCTTCTCCTGAGCAACTCTGTTATGTCCATTGCAATATTTGCGACACTGTCCTTGCGGTTAGTGTTCCTTGTTGTAGTTTGTTTAAAACTGTGACAGTTCGATGTGGACACTGCACGAATCTGCTTCCTGTCAACATGCGTGGCCTTCTTCTGCCTTCACCTAATCAATTTCATCAGCTTGGCCACTCTTTCTTTTCTCCTAATTCTCATAACATTCTCGAAAATATGGCTACACCAAATTCCAATTATCTTATCAACCAGTTTGGAGCTACTACTAACAATTTTGGAATGCCATCTCGAGGAGTTACTGATGAACTCCCTAGGCCACCAGCCATTAACAGACCTCCGGAGAAGAGACAGAGAGTGCCTTCTGCATACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATATCCCACAGAGAAGCCTTCAGTGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTTATGCCCGACCAGACAGTGAAGAAGACAAATATCCGCCAGCAGGAAGGAGATACTCAGAATGTTCTGATGAAAGACAATGGATTCTATGCCTCAGCCAATGTTGGTGTCTCCCACTTCTAA 729 44.99 MSSSSSSSSPTSTTTATTTTTLSQQQHLQQQLDHHLPSPEQLCYVHCNICDTVLAVSVPCCSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQFHQLGHSFFSPNSHNILENMATPNSNYLINQFGATTNNFGMPSRGVTDELPRPPAINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGDTQNVLMKDNGFYASANVGVSHF 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4042952 4045698 - ClCG01G003810.2 Cla01g00368 263957

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00368 242 Pfam YABBY protein 39 203 IPR006780 GO:0007275
Cla01g00368 242 PANTHER AXIAL REGULATOR YABBY 3 1 240 - -
Cla01g00368 242 Gene3D High mobility group box domain 146 211 IPR036910 -
Cla01g00368 242 PANTHER PROTEIN YABBY 6-RELATED 1 240 IPR006780 GO:0007275
Cla01g00368 242 MobiDBLite consensus disorder prediction 1 31 - -
Cla01g00368 242 SUPERFAMILY HMG-box 148 196 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00368 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101214748 431.409
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g00368 Cla10g00285 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00368 Cla-Chr1:4042952 Cla11g00285 Cla-Chr11:3276437 6.24E-55 dispersed
Cla01g00368 Cla-Chr1:4042952 Cla10g00285 Cla-Chr10:3758007 5.31E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g495 Blo02g01054 . Bda06g00039 Bda08g00564 Bpe05g00592 Bpe07g00159 . Bma14g00033 Cmo06g00784 . . Cma15g01149 . Car15g01044 . . . . . . . . . . Cla10g00285 Cam10g0296 Cec10g0303 Cco10g0299 Clacu10g0295 Cmu10g1134 Cre10g0542 . . Cone6ag0698 Cone9ag0698 Lsi07g01331 Csa05g00395 Chy09g01118 Cme06g02614 Blo03g00407 . Bda07g00010 . . Bpe11g00259 . . . . Cmo15g01209 Cma06g00763 . Car06g00681 . Cpe08g00754 Cpe13g00219 Bhi12g00406 . . . . . Lcy12g1797 Cla01g00368 Cam01g0388 Cec01g0381 Cco01g0399 Clacu01g0387 Cmu01g0368 Cre09g2142 Lsi09g00397 Csa03g00304 Chy06g02018 Cme09g01648
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla05g02399 . 12 167 C2C2-YABBY Transcription Factor Family AT1G69180 57.1 9.9e-46 180.3
Cla01g00368 CCT 82 242 C2C2-YABBY Transcription Factor Family AT2G45190 58.6 2.1e-42 169.1
Cla02g02184 . 1 198 C2C2-YABBY Transcription Factor Family AT1G08465 58.0 1.4e-50 196.4
Cla01g00368 CCT 38 232 C2C2-YABBY Transcription Factor Family AT1G08465 51.8 1.6e-43 172.9
Cla11g00285 . 5 180 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 7.5e-41 164.1
Cla01g00368 CCT 49 241 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 4.5e-50 194.9
Cla05g02553 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 53.8 2.0e-39 159.8
Cla11g00285 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 71.3 4.4e-61 231.1
Cla06g01123 . 8 222 C2C2-YABBY Transcription Factor Family AT2G26580 55.8 4.3e-56 214.5
Cla02g02184 . 1 198 C2C2-YABBY Transcription Factor Family AT2G26580 52.0 1.3e-44 176.4
Cla01g00368 CCT 40 204 C2C2-YABBY Transcription Factor Family AT2G26580 54.4 6.4e-44 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001283 4 1 4 3 5 2 3 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 2 2 2 4 2 2 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60358 PF04690 YABBY 2.90E-70 CL0114 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00368 Cla_Chr01 FPKM 5.027041 6.078978 4.767131 4.292959 10.826509 9.23673 12.168649 5.43146 5.280161 5.644614