Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00368 ATGTCATCTTCTTCATCTTCTTCTTCTCCTACTTCTACTACTACTGCTACCACTACGACTACGTTATCTCAACAACAACACCTGCAACAGCAGCTGGACCACCACCTTCCTTCTCCTGAGCAACTCTGTTATGTCCATTGCAATATTTGCGACACTGTCCTTGCGGTTAGTGTTCCTTGTTGTAGTTTGTTTAAAACTGTGACAGTTCGATGTGGACACTGCACGAATCTGCTTCCTGTCAACATGCGTGGCCTTCTTCTGCCTTCACCTAATCAATTTCATCAGCTTGGCCACTCTTTCTTTTCTCCTAATTCTCATAACATTCTCGAAAATATGGCTACACCAAATTCCAATTATCTTATCAACCAGTTTGGAGCTACTACTAACAATTTTGGAATGCCATCTCGAGGAGTTACTGATGAACTCCCTAGGCCACCAGCCATTAACAGACCTCCGGAGAAGAGACAGAGAGTGCCTTCTGCATACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATATCCCACAGAGAAGCCTTCAGTGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTTATGCCCGACCAGACAGTGAAGAAGACAAATATCCGCCAGCAGGAAGGAGATACTCAGAATGTTCTGATGAAAGACAATGGATTCTATGCCTCAGCCAATGTTGGTGTCTCCCACTTCTAA 729 44.99 MSSSSSSSSPTSTTTATTTTTLSQQQHLQQQLDHHLPSPEQLCYVHCNICDTVLAVSVPCCSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQFHQLGHSFFSPNSHNILENMATPNSNYLINQFGATTNNFGMPSRGVTDELPRPPAINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGDTQNVLMKDNGFYASANVGVSHF 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4042952 4045698 - ClCG01G003810.2 Cla01g00368 263957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00368 242 Pfam YABBY protein 39 203 IPR006780 GO:0007275
Cla01g00368 242 PANTHER AXIAL REGULATOR YABBY 3 1 240 - -
Cla01g00368 242 Gene3D High mobility group box domain 146 211 IPR036910 -
Cla01g00368 242 PANTHER PROTEIN YABBY 6-RELATED 1 240 IPR006780 GO:0007275
Cla01g00368 242 MobiDBLite consensus disorder prediction 1 31 - -
Cla01g00368 242 SUPERFAMILY HMG-box 148 196 IPR036910 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g00368 Cla10g00285 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00368 Cla-Chr1:4042952 Cla11g00285 Cla-Chr11:3276437 6.24E-55 dispersed
Cla01g00368 Cla-Chr1:4042952 Cla10g00285 Cla-Chr10:3758007 5.31E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60358 PF04690 YABBY 2.90E-70 CL0114 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00368 K25796 - csv:101214748 431.409