Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00375 ATGTCAGCTTACAGAGACGAAGATCCTCGCATCCATGGCATCAGGACTAAGATTCGTGTTGTCCCTAATTTCCCTCAACCAGGTATCATGTTCCAAGACATAACCACTCTGTTACTCGACCCCAAAGCATTCAAAGATACTATTGATTTGTTCGTCGAGCGATACAAAGGGAAAAACATTTCAGTTGTTGCAGGAATTGAAGCTCGAGGTTTTATATTTGGCCCTCCAATTGCATTGGCTATAGGAGCAAAATTTGTTCCTTTAAGGAAACCAAGGAAGCTACCTGGAGAAGTTATTTCTGAAAAGTACATATTAGAATATGGAAGTGATTGCCTGGAGATGCATGTTGGAGCTGTCAAACCACATGAACGGGCCTTGGTGGTGGATGACTTAATTGCGACAGGTGGCACTCTTCGTGCAGCTATGAATTTACTTGAACGTGTCGGAGCTGAAGTAATTGAATGTGCTTGCGTCATTGAATTGCCAGATTTAAAGGGTCGGGAGCGGTTGAACGATAAGCCATTGTTTGTGCTAGTAGAGTACCAATAA 549 42.81 MSAYRDEDPRIHGIRTKIRVVPNFPQPGIMFQDITTLLLDPKAFKDTIDLFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPRKLPGEVISEKYILEYGSDCLEMHVGAVKPHERALVVDDLIATGGTLRAAMNLLERVGAEVIECACVIELPDLKGRERLNDKPLFVLVEYQ 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4150042 4154859 + ClCG01G003890.2 Cla01g00375 263964

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00375 182 CDD PRTases_typeI 48 180 IPR000836 -
Cla01g00375 182 Gene3D - 2 182 IPR029057 -
Cla01g00375 182 Hamap Adenine phosphoribosyltransferase [apt]. 14 181 IPR005764 GO:0003999|GO:0005737|GO:0006168
Cla01g00375 182 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 3-RELATED 2 181 - -
Cla01g00375 182 TIGRFAM apt: adenine phosphoribosyltransferase 15 181 IPR005764 GO:0003999|GO:0005737|GO:0006168
Cla01g00375 182 Pfam Phosphoribosyl transferase domain 50 176 IPR000836 -
Cla01g00375 182 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 2 181 - -
Cla01g00375 182 SUPERFAMILY PRTase-like 13 175 IPR029057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00375 K00759 APRT, apt; adenine phosphoribosyltransferase [EC:2.4.2.7] - csv:101216186 356.681
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01342 Cla-Chr8:26263678 Cla01g00375 Cla-Chr1:4150042 2.06E-88 transposed
Cla08g01616 Cla-Chr8:28758874 Cla01g00375 Cla-Chr1:4150042 3.20E-85 transposed
Cla01g00375 Cla-Chr1:4150042 Cla10g00278 Cla-Chr10:3641135 1.61E-97 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla01g00375 . 30 180 PRT Gene Family AT1G80050 75.5 6.7e-62 233.8
Cla08g01342 . 33 168 PRT Gene Family AT1G80050 80.9 8.4e-57 216.9
Cla08g01616 . 144 313 PRT Gene Family AT1G80050 62.4 9.7e-53 203.4
Cla10g00278 . 30 202 PRT Gene Family AT1G80050 54.5 5.1e-46 181.0
Cla08g01342 . 1 148 PRT Gene Family AT5G11160 81.1 4.4e-64 241.1
Cla01g00375 . 8 145 PRT Gene Family AT5G11160 75.4 2.2e-55 212.2
Cla08g01616 . 88 260 PRT Gene Family AT5G11160 59.5 2.1e-50 195.7
Cla10g00278 . 8 131 PRT Gene Family AT5G11160 65.2 3.8e-44 174.9
Cla01g00375 . 7 180 PRT Gene Family AT1G27450 74.7 9.6e-73 270.0
Cla08g01616 . 81 316 PRT Gene Family AT1G27450 63.6 8.1e-72 266.9
Cla08g01342 . 11 179 PRT Gene Family AT1G27450 70.6 9.6e-65 243.4
Cla10g00278 . 1 202 PRT Gene Family AT1G27450 53.7 1.5e-54 209.5
Cla11g00360 . 73 557 PRT Gene Family AT2G16570 85.2 6.1e-243 837.0
Cla11g00360 . 73 557 PRT Gene Family AT4G34740 86.0 1.6e-243 839.0
Cla11g00360 . 28 530 PRT Gene Family AT4G38880 70.4 1.7e-199 692.6
Cla01g00375 . 7 180 PRT Gene Family AT1G27450 74.7 9.6e-73 270.0
Cla08g01616 . 81 316 PRT Gene Family AT1G27450 63.6 8.1e-72 266.9
Cla08g01342 . 11 179 PRT Gene Family AT1G27450 70.6 9.6e-65 243.4
Cla10g00278 . 1 202 PRT Gene Family AT1G27450 53.7 1.5e-54 209.5
Cla01g00375 . 30 180 PRT Gene Family AT1G80050 75.5 6.7e-62 233.8
Cla08g01342 . 33 168 PRT Gene Family AT1G80050 80.9 8.4e-57 216.9
Cla08g01616 . 144 313 PRT Gene Family AT1G80050 62.4 9.7e-53 203.4
Cla10g00278 . 30 202 PRT Gene Family AT1G80050 54.5 5.1e-46 181.0
Cla01g00375 . 6 104 PRT Gene Family AT4G22570 82.8 5.4e-44 173.7
Cla10g00278 . 5 95 PRT Gene Family AT4G22570 85.7 1.5e-41 165.6
Cla08g01342 . 11 100 PRT Gene Family AT4G22570 78.9 2.2e-37 151.8
Cla01g00375 . 1 96 PRT Gene Family AT4G12440 84.4 8.7e-41 162.9
Cla10g00278 . 1 95 PRT Gene Family AT4G12440 82.1 1.8e-38 155.2
Cla08g01342 . 4 99 PRT Gene Family AT4G12440 78.1 3.4e-37 151.0
Cla08g01342 . 1 148 PRT Gene Family AT5G11160 81.1 4.4e-64 241.1
Cla01g00375 . 8 145 PRT Gene Family AT5G11160 75.4 2.2e-55 212.2
Cla08g01616 . 88 260 PRT Gene Family AT5G11160 59.5 2.1e-50 195.7
Cla10g00278 . 8 131 PRT Gene Family AT5G11160 65.2 3.8e-44 174.9
Cla08g00735 . 1 186 PRT Gene Family AT1G71750 65.0 1.8e-69 259.2
Cla09g02102 . 95 513 PRT Gene Family AT1G55810 88.8 3.1e-221 764.6
Cla05g01259 . 56 519 PRT Gene Family AT1G55810 73.5 1.5e-199 692.6
Cla09g02102 . 110 522 PRT Gene Family AT3G27440 76.1 1.6e-184 642.5
Cla05g01259 . 117 519 PRT Gene Family AT3G27440 75.4 9.2e-180 626.7
Cla05g01259 . 41 519 PRT Gene Family AT3G27190 86.0 9.4e-245 842.8
Cla09g02102 . 95 512 PRT Gene Family AT3G27190 81.1 3.6e-204 708.0
Cla04g00768 . 3 291 PRT Gene Family AT3G53900 65.4 2.4e-105 379.0
Cla09g02102 . 73 513 PRT Gene Family AT4G26510 84.0 4.9e-222 767.3
Cla05g01259 . 48 519 PRT Gene Family AT4G26510 75.8 7.3e-210 726.9
Cla05g01259 . 45 519 PRT Gene Family AT5G40870 87.0 9.5e-245 842.8
Cla09g02102 . 95 515 PRT Gene Family AT5G40870 79.6 1.2e-202 703.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00375 Cla_Chr01 FPKM 7.459613 9.251177 5.710341 4.828599 4.275645 3.706845 4.52022 0.0 0.0 0.0