Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00377 ATGAAGGTCAAGGAAATGCACCCTCTGTGTTGTCTCTCAGTCGACACTTTCGGAATCGGAGCATGTGGTGGCGATGGAGAAAAGTCCAAGGATGAGGCTGCGGCCTTGGCTCTCTCTAGGACCAAAAGCATGCCGGCGAGTTTGGGGGCTTTTTCCGATGGATCTGATGGGAATGTCATCAAACGGCCACCGGCCGGATCCAAATCCGCGGTCGCCGGAGTTCTTCATAAGTGGACCAATTACGGTAAAGGGTGGAGATCGAGGTGGTTCTTCCTCCGCAATGGGGTATTATCTTACGCGAAGATTCGCCGACCGGAGAATCTGAATCTTCTTGCTCCATACGACGATGTTCGATTGATCGGAGAGATTTCGAACAATCGGATTCCGAGGGGAGAGGAGAAAGGTGGAGGGAGACGAAAGCATCAGAAAGCGGTGGGAGTGGTTCATTTGAAGTGGGTCACATCCACAGGTAGATTAGTGGTTTTTTCTTATACTTTTATTCCCTCTTTTGGGTACGACCCCATTAAAGAGTTTACTCTAAGCGAGCATTGGGTAGGTTTTGAACTTCCCTCCAGGCTCCAGCAGATGTTACTATTCGTAATCTTGTGGGTTTTGTTTTGTGAGAGGAAAAAGAGGTTTTATATATCCACTGCTACAAAGACTCTTCATTTGAGAACTAATTCAAAGAGTGATCGAGGGGCTTGGATTCAAGCTTTGGCTTCGGATCGAAGCATATCTCCTCAAACATCACTGAATTATAATCTCTCCCCTGTGCCGAGTGATTTATCGGTGTCGACGGACAGACTGAAGAAGCGTTTAATTGAAGAGGGAATCAGTGAAACTCTTGTAAAGGACTGTGAACAGATAATGCTCTCCGAATTCTCCGAAATTCAAGGGCAGCTTCAAGTTCTATGTGAAGAACGATATAACCTGCTTGACACAATTAGGCAGTTGGAGGCTGCTAATTTTGAAGCTGAAGCTTCTGGAACGAATGATGGCGAATTCCAACTTACAAAACATGATCTTTCCTCTGAAGAACGTGGAAAATATAGTGAGTGCAGCACCACGGAATCATCGGATGATATTGAGAAACAAGAGTTTGAGGAGGAGGTTTCGGACGAAGACGAAGTGTCCTTTTATGACACCAGGGATTCTTTTTCTGAAAATTCTGTCGATGATGGAATTAATAGCAAGGCTGAAAATTGTCATTATGACGATGCTGAGACAATGCCTGCTAAACTGCAGTTACAGAACAGATATTCACACATTCAAAGGCGAAAACGGCTTCCTGATCCGGTGGAGAAGGAGAAACGAGTCAGCCTTTGGTCAATGATCAAAGACAATGTGGGAAAAGATTTGACAAGAGTATGCCTCCCTGTTTACTTCAATGAGCCGATATCATCACTACAGAAATGCTGTGAGGACATGGAGTATTCGTATCTATTAGATCAGGCATACGAGCAAGGGAAGCAGGGAAATAGTCTACAAAGGATTCTGAATGTTGCAGCATTCGCGGTTTCGGGGTACGCTTCGTCCGAAGGCAGGCATTGCAAACCATTCAATCCCCTGTTGGGGGAAACTTATGAAGCGGATTTTCCAGAGAAAGGGATTCGGTTTTTCTCCGAGAAGGTGAGCCACCATCCAACTCTGATAGCATGCCATTGTGAGGGGAGAGGGTGGAAGTTTTGGGGAGATAGCAACCTTCAGTCCAAATTCTCGGGAAGGTCAATTCAGCTGGACCCTCTTGGAGTTCTCACACTCGAGTTTGATGATGGCGAAATCTTCCAGTGGAGCAAGGTAACAACAAATATTTATAATCTCATCCTCGGGAAAGTATATTGTGATCACCATGGAACTATGCACATACGTGGTAACCGGGACTATTCGTGCAACCTAAAGTTCAAAGAGCAATCTTTTCTTGACCGAAATCCTCGTCAGGTTCACGGGTACGTCGAATATGCCAACGGGGAAAAAGTTGCGACATTGTTTGGGAAGTGGGATGACAGCATGTATTATGTAAATGGTCATGAGAATGTAAATTCAAAGAGTTGTGATGGTACTTTGCTGTGGAAAAGCAATGAACCGCCACAGAATCTGACTCGATACAACTTGACTTCTTTTGCGATCACTTTGAATGAGCTGACACCAGGGCTCAAGGAGATGCTCCCTCCCACGGATTCCAGACTCCGACCGGATCAACGGCATCTGGAAAATGGCGAGTACGATAAAGCCAATGCAGAGAAGCTACGGTTAGAGCAAAGGCAAAGAATTTCAAGGAAGTTGCAAGAAAATGGTTGGAAGCCGAGATGGTTTCAGAGAGAGGGTGAAGATGGTCCCTTTCGGTATGTCGGGGGATATTGGGAAGCAAGGGAAGAGAGGAAATGGGACGATTGCGCAGATATATTTGGGGAATTGAATGAGGAGGTTATGGAGAATTAG 2439 45.59 MKVKEMHPLCCLSVDTFGIGACGGDGEKSKDEAAALALSRTKSMPASLGAFSDGSDGNVIKRPPAGSKSAVAGVLHKWTNYGKGWRSRWFFLRNGVLSYAKIRRPENLNLLAPYDDVRLIGEISNNRIPRGEEKGGGRRKHQKAVGVVHLKWVTSTGRLVVFSYTFIPSFGYDPIKEFTLSEHWVGFELPSRLQQMLLFVILWVLFCERKKRFYISTATKTLHLRTNSKSDRGAWIQALASDRSISPQTSLNYNLSPVPSDLSVSTDRLKKRLIEEGISETLVKDCEQIMLSEFSEIQGQLQVLCEERYNLLDTIRQLEAANFEAEASGTNDGEFQLTKHDLSSEERGKYSECSTTESSDDIEKQEFEEEVSDEDEVSFYDTRDSFSENSVDDGINSKAENCHYDDAETMPAKLQLQNRYSHIQRRKRLPDPVEKEKRVSLWSMIKDNVGKDLTRVCLPVYFNEPISSLQKCCEDMEYSYLLDQAYEQGKQGNSLQRILNVAAFAVSGYASSEGRHCKPFNPLLGETYEADFPEKGIRFFSEKVSHHPTLIACHCEGRGWKFWGDSNLQSKFSGRSIQLDPLGVLTLEFDDGEIFQWSKVTTNIYNLILGKVYCDHHGTMHIRGNRDYSCNLKFKEQSFLDRNPRQVHGYVEYANGEKVATLFGKWDDSMYYVNGHENVNSKSCDGTLLWKSNEPPQNLTRYNLTSFAITLNELTPGLKEMLPPTDSRLRPDQRHLENGEYDKANAEKLRLEQRQRISRKLQENGWKPRWFQREGEDGPFRYVGGYWEAREERKWDDCADIFGELNEEVMEN 812
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4198875 4207720 + ClCG01G003910.2 Cla01g00377 263966

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00377 812 Gene3D - 526 696 - -
Cla01g00377 812 SUPERFAMILY PH domain-like 67 240 - -
Cla01g00377 812 Pfam Oxysterol-binding protein 440 791 IPR000648 GO:0008289
Cla01g00377 812 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 4 806 IPR000648 GO:0008289
Cla01g00377 812 SMART PH_update 69 246 IPR001849 -
Cla01g00377 812 ProSiteProfiles PH domain profile. 68 244 IPR001849 -
Cla01g00377 812 PANTHER BNAC03G64980D PROTEIN 4 806 - -
Cla01g00377 812 Gene3D - 733 807 - -
Cla01g00377 812 Gene3D - 64 246 IPR011993 -
Cla01g00377 812 SUPERFAMILY Oxysterol-binding protein-like 435 808 IPR037239 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00377 K20456 OSBP; oxysterol-binding protein 1 - csv:101216432 1368.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00377 Cla-Chr1:4198875 Cla03g00886 Cla-Chr3:12355115 0 dispersed
Cla01g00377 Cla-Chr1:4198875 Cla10g00276 Cla-Chr10:3514772 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g512 . . . Bda08g00569 . . Bma07g01601 Bma14g00510 . . . . Car02g01309 . . . . Bhi11g00211 Tan01g2012 . . . . . . . . . . . . . . . . . Csa05g00404 Chy09g01108 . Blo03g00415 . Bda07g00005 Bda09g00095 Bpe08g01434 Bpe11g00265 . . . . . . . . . . Cpe13g00226 Bhi12g00422 . . . . . . Cla01g00377 Cam01g0396 Cec01g0388 Cco01g0408 Clacu01g0397 Cmu01g0378 Cre09g2134 Lsi09g00408 . Chy06g02027 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000881 4 7 4 5 4 2 5 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 3 4 2 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00377 Cla_Chr01 FPKM 0.655817 0.901434 0.553801 0.257427 0.0 0.0 0.0 0.258258 0.109433 0.192161