Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00391 ATGCAGAAAAGTACATCAACATCTTCCTTAGGTCCAGGCGGCCTCGACCTTTCTCAAGCCTTCTTCAAACCAATCCGCGACGCCTCTCCTCCATCCACCTCAAAACGCAACACCAAAATCTCCGTCATCGGCGCCGGAAACGTCGGCATGGCCATTGCTCAAACCATCCTCACTCAAGATCTGGTTGATGAACTCATCCTCGTCGACGCCAAGCCCGACAAACTCCGCGGCGAAATGCTCGATCTCCAACACGCTGCCGCCTTCCTTCCCCGCACCAAAATCAGCGCTTCCACAGATTACTCCGTTACCGCTGGATCCGATCTATGTATTGTCACCGCTGGTGCTCGCCAGATCGCCGGTGAATCTAGGTTGAATCTGTTGCAGAGGAATGTCGCTCTGTTTCAGAAGATCGTGCCGCCGCTGGTTCAGTTCTCTCCCGACACGATTCTTCTGATCGTTTCGAATCCGGTGGATGTTTTGACTTATGTTGCTTGGAAGCTCTCTGGTTTCCCGTCGAATCGAGTGATTGGATCGGGAACGAATCTGGATTCGTCTAGGTTTCGGTTTCTCATCGCCGATCATCTCGACGTCAATGCTCAGGATGTTCAGGGACCAAATTTTTACCAAAATGAAAAAGTAAATTCCAAGTTCACCCAAAATTATATATATGTTTTGAAGGCCTACATAGTGGGAGAGCATGGCGACAGTTCTGTGGCGTTATGGTCAAGCATAAGCGTGGGCGGGGTGCCAATACTAAGCTTTCTAAAGAATCAACAAATCGCCTACGAGAAAGAAACATTAGAGAAAATTCACAAAGAGGTCATAGGCGGGGCTTACGAAGTCATAAGCCTGAAGGGCTACACATCATGGGCGATCGGGTACTCTGTGGCGAGCTTGGCTCGGTCGCTCATTCGGGACCAACGGAGGATCCACCCTGTTTCCGTCTTTGCAAAAGGGTTTTATGGCATTGACGGGGGCGACTTGTTCCTTAGTTTGCCCGCGCAGCTTGGGAGGGGTGGAGTATTGGGGATCACCAATGTGCATCTAACAGAAGAGGAGTCGAGACGATTGAGAGACTCGGCAAACACCATCTTGCAAGTGCAGACTGAGTTGGGAATCTAA 1122 50.36 MQKSTSTSSLGPGGLDLSQAFFKPIRDASPPSTSKRNTKISVIGAGNVGMAIAQTILTQDLVDELILVDAKPDKLRGEMLDLQHAAAFLPRTKISASTDYSVTAGSDLCIVTAGARQIAGESRLNLLQRNVALFQKIVPPLVQFSPDTILLIVSNPVDVLTYVAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQGPNFYQNEKVNSKFTQNYIYVLKAYIVGEHGDSSVALWSSISVGGVPILSFLKNQQIAYEKETLEKIHKEVIGGAYEVISLKGYTSWAIGYSVASLARSLIRDQRRIHPVSVFAKGFYGIDGGDLFLSLPAQLGRGGVLGITNVHLTEEESRRLRDSANTILQVQTELGI 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4322307 4324433 - ClCG01G003970.2 Cla01g00391 263980

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00391 373 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 1 204 - -
Cla01g00391 373 PANTHER L-LACTATE DEHYDROGENASE 225 373 - -
Cla01g00391 373 CDD LDH_1 35 370 - -
Cla01g00391 373 SUPERFAMILY LDH C-terminal domain-like 178 369 IPR015955 GO:0003824|GO:0016616
Cla01g00391 373 Gene3D - 180 371 IPR015955 GO:0003824|GO:0016616
Cla01g00391 373 Gene3D - 22 179 - -
Cla01g00391 373 ProSitePatterns L-lactate dehydrogenase active site. 230 236 IPR018177 GO:0004459
Cla01g00391 373 PANTHER L-LACTATE DEHYDROGENASE 1 204 - -
Cla01g00391 373 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 24 177 IPR036291 -
Cla01g00391 373 PRINTS L-lactate dehydrogenase signature 175 193 IPR001557 GO:0016616|GO:0019752
Cla01g00391 373 PRINTS L-lactate dehydrogenase signature 39 63 IPR001557 GO:0016616|GO:0019752
Cla01g00391 373 PRINTS L-lactate dehydrogenase signature 64 88 IPR001557 GO:0016616|GO:0019752
Cla01g00391 373 PRINTS L-lactate dehydrogenase signature 151 171 IPR001557 GO:0016616|GO:0019752
Cla01g00391 373 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 180 365 IPR022383 GO:0016616
Cla01g00391 373 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 225 373 - -
Cla01g00391 373 Pfam lactate/malate dehydrogenase, NAD binding domain 38 177 IPR001236 GO:0016491
Cla01g00391 373 PIRSF Lac_mal_DH 34 373 IPR001557 GO:0016616|GO:0019752
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00391 K00016 LDH, ldh; L-lactate dehydrogenase [EC:1.1.1.27] - csv:101217863 639.802
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00391 Cla-Chr1:4322307 Cla01g01759 Cla-Chr1:32497399 4.96E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g521 . . . . . . . Bma14g00041 . . . Cma15g01128 . Car15g01033 . . . . . . . . . . . . . . . . . . . Cone6ag0679 Cone9ag0684 . Csa05g00415 Chy09g01095 . Blo03g00416 . Bda07g00006 . . Bpe11g00266 . . . . Cmo15g01187 . . . . . Cpe13g00228 Bhi12g00434 . . . . . Lcy12g1823 Cla01g00391 Cam01g0408 Cec01g0400 Cco01g0421 Clacu01g0409 Cmu01g0390 Cre09g2120 Lsi09g00417 . . Cme09g01623
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004596 1 1 1 1 2 1 2 1 1 2 1 1 2 1 1 1 1 4 2 1 1 3 1 1 1 1 1 1 2 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00391 Cla_Chr01 FPKM 21.835855 22.654764 28.308525 26.864452 16.14044 16.475016 17.012403 13.748261 13.20731 13.07044