Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00394 AAAAAAATCCTTTTAAAAAAGAAAAGAAAAAAAAAAAGAAATCCTCTATTCTGCCCCACGGCGCTCCCTTTCCCCTTCCCCCCTGCCCGCCGACCTCAACTTCACCGGCCGACATCACCGCCGCCTTACGCCAGTGTGAATTATAATCTTAGTTTCTTAGAGTTGGTGATTATGGGAGGTCATGGAGGTTTAAATATTCTTCCCCAAAAGCGATGGAATGTGTACAACTATGAGAACAGAGAGAAAGTGCGGCGAGATGAAGAAGCTGCAGCCAAAGAAGAACAGCTTAAACGCGAGCAGGCTAGGAAACGGGATGCTGAGTTTCGTCTCGAGCAGCTTCGTACCGCACGGGGTTTAGCTCCAGTAATTGACACTGCAAAGCCAGTAGAAACAGACCTGAAACCTGGTCACATAAATCTATTTGAAGGCATCAAGATTTTTGACCCAGTTAAAGGTTCAGAAAATGGGGGAGTTGAAGATGGGTCTAAGAAGAGGATGAAGAAGGAAGAAGTGGAAAAAAGAGTAATCACACCTGAAGATGAGAAGTATAAGTTAGGTTATGGTGTTGCTGGAAAAGGAGTCAAGTTGCCATGGTACCTTGAGAGGCCTGACAAGGATGACGCCGAGAGTGACGAAATTGATGGATTGTCAAGAGTAGGGAGTGGAAATGTAAAAAAGGGAGGAAAAAAGACCTTGGAAGAATTGAGGGCCGAGCGTCTGAAACGAGAGCTGAAGGAGAAGGGAAGGGAGCGTGCATTAATCGCAGAGAGAAGCCGGAAGAGTGGAACAGCTTCAAGGGAAGGAGATTCATCTTCCAGGAGGTGGAATTCCAGAAGGTAA 840 45.95 KKILLKKKRKKKRNPLFCPTALPFPFPPARRPQLHRPTSPPPYASVNYNLSFLELVIMGGHGGLNILPQKRWNVYNYENREKVRRDEEAAAKEEQLKREQARKRDAEFRLEQLRTARGLAPVIDTAKPVETDLKPGHINLFEGIKIFDPVKGSENGGVEDGSKKRMKKEEVEKRVITPEDEKYKLGYGVAGKGVKLPWYLERPDKDDAESDEIDGLSRVGSGNVKKGGKKTLEELRAERLKRELKEKGRERALIAERSRKSGTASREGDSSSRRWNSRR 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4351113 4353250 + ClCG01G004000.1 Cla01g00394 263983

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00394 279 Coils Coil 84 116 - -
Cla01g00394 279 MobiDBLite consensus disorder prediction 205 232 - -
Cla01g00394 279 SMART Cir_N_3 71 107 IPR019339 -
Cla01g00394 279 PANTHER OS10G0507500 PROTEIN 58 264 - -
Cla01g00394 279 PANTHER OS10G0507500 PROTEIN 58 264 - -
Cla01g00394 279 MobiDBLite consensus disorder prediction 246 279 - -
Cla01g00394 279 Coils Coil 230 257 - -
Cla01g00394 279 MobiDBLite consensus disorder prediction 84 103 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00394 - - - bhj:120067256 406.371
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g530 . Blo03g00163 Bda06g00030 . . Bpe07g00174 . . . . . Cma15g01126 . Car15g01031 . . . . . . . . . . . . . . . . . . Cone12ag0379 . . . Csa05g00418 Chy09g01091 . . . . . . . . Bma12g00641 . . . . . . . . Cpe13g00230 Bhi12g00442 . . . . . Lcy12g1826 Cla01g00394 Cam01g0411 Cec01g0402 Cco01g0423 Clacu01g0412 Cmu01g0393 . . . . Cme09g01620
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011190 1 2 1 2 1 1 1 0 0 1 1 1 1 1 1 0 1 1 1 0 1 1 0 0 1 0 1 4 2 2 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00394 Cla_Chr01 FPKM 8.05974 11.183224 44.592171 42.584618 148.297867 156.492722 147.064941 138.968887 146.115631 131.379532