Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00395 GGCACGTGTTTTGCTCCTCCCTTCTCTTGTCCGCAGCACGTTCGCCATTGTCGCTCCTCTCTTTTCTCGATCTGTTCGCGAAACTTGCTCTCAAGCAAACTCATTTCCAGATTCTCTTCTCTTCAATCTCTTCAATTTCATCTTCCCTTTTTTGATCCTGCTTCACTCTTCTCAACAATGAGTACGGGAGAACTCCTCAGCATCGAACCTCTCGAGCTCAAGTTTCCCTTCGAATTGAAGAAGCAGATCTCTTGTTCCCTTCAATTGTCTAACAAGACCGAGAGCTACGTTGCATTTAAGGTGAAAACTACGAACCCTAAAAAGTACTGCGTTCGCCCAAACACTGGAATTGTCTCTCCACGGTCAACATGTGACGTTATAGTCACCATGCAAGCCCAGAAAGAGGCTCCTGCTGATATGCAATGCAAAGACAAATTCCTTCTTCAGAGTGTTAAAACAGTTGATGGCGCAACTGCAAAGGATATCAACGCAGAAATGTTCAATAAGGAGGCTGGGCATGTGGTTGAGGAATTCAAATTGAAAGTCGTTTATGTTTCTCCACCTCAACCACCTTCTCCAGTACCAGAAGGTTCTGAAGAAGGGTCCTCTCCAAGAGGTTCTGTTTCAGAGAATGGAAACTTCAATGATGCTGACTTGAATACTGCTACAAGGGGATATGTTGAACGGTCGGAGCCGCAGGATAAATCTGCAGAGGCTAGAGCCCTCATAGCGAAACTCACAGAGGAAAAGAATAATGCCATACAACAGAATAACAAACTTCGTCAGGAATTGGAACTCTTAAAGCATGATGGCAGGAAAAATGCCGGTGGCGTCTCGTTCCTGTTCGTCATATTAGTCGGATTGATCGGAATCTTCTTTGGCTATATTATTAAGAAGACTTGA 903 44.41 GTCFAPPFSCPQHVRHCRSSLFSICSRNLLSSKLISRFSSLQSLQFHLPFFDPASLFSTMSTGELLSIEPLELKFPFELKKQISCSLQLSNKTESYVAFKVKTTNPKKYCVRPNTGIVSPRSTCDVIVTMQAQKEAPADMQCKDKFLLQSVKTVDGATAKDINAEMFNKEAGHVVEEFKLKVVYVSPPQPPSPVPEGSEEGSSPRGSVSENGNFNDADLNTATRGYVERSEPQDKSAEARALIAKLTEEKNNAIQQNNKLRQELELLKHDGRKNAGGVSFLFVILVGLIGIFFGYIIKKT 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4353707 4357458 - ClCG01G004010.1 Cla01g00395 263984

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00395 300 Pfam MSP (Major sperm protein) domain 66 169 IPR000535 -
Cla01g00395 300 SUPERFAMILY PapD-like 59 200 IPR008962 -
Cla01g00395 300 Gene3D Immunoglobulins 59 189 IPR013783 -
Cla01g00395 300 ProSiteProfiles Major sperm protein (MSP) domain profile. 65 185 IPR000535 -
Cla01g00395 300 Coils Coil 236 270 - -
Cla01g00395 300 MobiDBLite consensus disorder prediction 188 219 - -
Cla01g00395 300 PANTHER VESICLE-ASSOCIATED PROTEIN 1-2-LIKE 60 298 - -
Cla01g00395 300 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 60 298 IPR016763 GO:0005789
Cla01g00395 300 MobiDBLite consensus disorder prediction 202 219 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00395 - - - cmax:111468836 411.379
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00395 Cla-Chr1:4353707 Cla06g00291 Cla-Chr6:3745113 1.29E-88 dispersed
Cla01g00395 Cla-Chr1:4353707 Cla02g01595 Cla-Chr2:30649990 1.11E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g534 Blo02g01044 Blo03g00161 Bda06g00029 Bda08g00576 Bpe05g00582 Bpe07g00176 . . . Cmo16g01161 . Cma15g01125 . Car15g01030 Sed04g1666 Cpe14g00917 . Bhi11g00073 Tan01g2092 Cmetu06g0529 . . Mch10g1587 . . . . . . . . . . . . . Csa05g00419 Chy09g01090 . Blo03g00417 . Bda07g00001 . . Bpe11g00268 Bma05g00421 Bma12g00643 . . Cmo15g01185 . Cma16g01109 . Car16g01047 . Cpe13g00231 Bhi12g00443 . . Lac11g2281 Hepe06g1669 . Lcy12g0040 Cla01g00395 Cam01g0412 Cec01g0403 Cco01g0424 Clacu01g0413 Cmu01g0394 Cre09g2117 Lsi09g00420 . . Cme09g01619
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000979 4 2 2 4 4 2 3 2 2 2 2 2 3 2 2 4 2 6 4 2 2 3 2 2 2 2 2 6 3 3 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00395 Cla_Chr01 FPKM 7.157149 7.241207 9.140672 8.989617 10.480484 10.2139 13.067271 8.520468 9.523292 9.881968