Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00398 ATGGCATTCCTTTTTCCCTCATTTTTCTTCTCCACTTTCTTTCTCCTATGCTTTTCCGCTGCCGCCAAGCACCGCCACCACTGGGTCGAACCCACCGGACACCGCCTCATCAAAGTGAATGTTAACGGCGGCTCCGATGAGTTTCTCTCCGTGCAAGCCGCCGTGGATGCAGTTCCCGATTACAATACCGTCAACACCGTCATCCGAATTAGCCCCGGATATTACGTGGAGAAGGTGGTGGTGCCGGCGACGAAGCCGTATATAACATTTGAAGGAGGAGGAAAAGAGACGACGGTGATAGAATGGCACGACCGGGCAGGTGACCGTGGTCCCAGCGGGCAGCAACTCCGTACTTATAGAACAGCCTCCGTTACCGTTTTTGCTAATTACTTCTCTGCCCGAAACATCAGCTTCAAGAATACGGCACCGGCGCCGCTGCCCGGAATGCAAGGGTGGCAGGCGGCGGCGTTCCGAATCTCCGGCGACAAAGCCTACTTTTCCGGCTGCGGATTCTACGGAGCACAAGATACGCTTTGCGACGACGCCGGCCGCCATTACTTCAAAGAATGCTACATTGAAGGCTCCATAGACTTCATCTTTGGAAATGGGCGTTCCATGTATAAGGATTGTGAGCTGCACTCAATCGCCACCCGGTTCGGTTCCATAGCGGCCCAAGATAGAAACTCGCCGTCTGAGAAGACCGGGTTTGCTTTTCTCCGGTGCAAGGTGACCGGTTCAGGACCCGTGTACGTGGGCCGAGCCATGGGCCAGTACTCCAGAATCGTCTATGCGTATACTTACTTTGATGATGTGGTGGCCCACGGTGGATGGGATGACTGGGACCACGTCAGCAACAAAAACAAGACTGTATTTTTTGGAGTATACAAGTGCTGGGGGCCAGGGGCAAGTAAAGTAAAGGGAGTATCATGGGCTAGAGAATTGGAGTATGAAGAGGCCCATCCATTTCTTGCCAAAAGCTTTGTCAATGGCAGACACTGGATTGCACCCTCTGATGCTTAG 1020 53.14 MAFLFPSFFFSTFFLLCFSAAAKHRHHWVEPTGHRLIKVNVNGGSDEFLSVQAAVDAVPDYNTVNTVIRISPGYYVEKVVVPATKPYITFEGGGKETTVIEWHDRAGDRGPSGQQLRTYRTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRNSPSEKTGFAFLRCKVTGSGPVYVGRAMGQYSRIVYAYTYFDDVVAHGGWDDWDHVSNKNKTVFFGVYKCWGPGASKVKGVSWARELEYEEAHPFLAKSFVNGRHWIAPSDA 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4379654 4386380 + ClCG01G004040.2 Cla01g00398 263987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00398 339 Pfam Pectinesterase 42 330 IPR000070 GO:0030599|GO:0042545
Cla01g00398 339 SUPERFAMILY Pectin lyase-like 37 336 IPR011050 -
Cla01g00398 339 PANTHER PECTINESTERASE 68-RELATED 20 338 - -
Cla01g00398 339 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 20 338 - -
Cla01g00398 339 ProSitePatterns Pectinesterase signature 2. 192 201 IPR033131 -
Cla01g00398 339 Gene3D - 35 338 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00398 Cla-Chr1:4379654 Cla03g01544 Cla-Chr3:31075764 5.47E-106 dispersed
Cla01g00398 Cla-Chr1:4379654 Cla08g01478 Cla-Chr8:27653586 1.11E-84 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00398 - - csv:101204661 667.922