Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00411 ATGGAAGATGATGGAGGCGAGAGATCGAGCTTCGTGATCGGTCTGATCGAGAACAGAGCTAAGGAGGTTGGAGTTGCTGCATTTGACTTGAGGTCAGCCTCACTTCATCTTTCTCAATATATAGAGACCAGCAGCTCCTACCAGAATACAAAAACTTTGCTGCATTTCTATGAACCAATGGTTATACTTGTTCCTCCAAACAAGCTCGCACCTGATGGCATGGTTGGAGTTTCAGTTTTGGTTGATAGGTTTTTTCCTACAGTTGTAATGGCACGTGCTTGCTTTGATGACACAAAGGGTGCTGTTCTGATTAAGAATCTGGCAGCCAAGGAGCCTTCTGCTCTTGGGTTAGAAACTTATTACAAACAATACTATCTCTGTCTGGCTGCTGCTGCTGCTAGCATTAAGTGGATTGAAGCAGAGAAGGGGGTAATCGTGACCAATCACTCTTTATTGATTTGCATTTTGAAAGAAAAGTACTATACACAGAAGAACCTGTCATCTGGATATGTCACCTTCAATGGATCATCTGATCACGTGAGCATTGATGCAACGAGCGTTCAGAATCTAGAAATTATTGAGCCACTTCACTCCAACCTATGGGGAACAAGCAACAAGAAGAGAAGTCTGTACAACATGCTCAAGACAACAAAAACAATAGGAGGGTCTAGACTTCTTCGTGCCAATCTATTGCAGCCGTTAAAAGATATTGAAACCATCAATGCCCGTCTGGATTGCCTGGATGAATTGATGAGCAATGAACAATTATTCTTTGGGCTTTCTCAAGCTCTCCGTAAATTTCCTAAGGAGACTGACAGAGTGCTTTGTCACTTCTGCTTCAAGCAAAAGAAAGTTACAAATGAAGTTTTGCGTGCTGATAATGCTAAAAAGAGCCAAAATTTGATATGTAGCATTATTCTGCTAAAAGCTGCCCTTGAGGCATTGCCTTTACTCTCAAAGGTACTTAAGGAAGCAAAGAGTTTTCTTCTTGCAAACATTTACAAATCTGTTTGTGAAAACGAAAAATTTGCAACCATTAGAAAGAGGATTGGAGAAGTGATTGATGAAGACGTTCTTCATGCAAGGGTTCCTTTTATTGCCCGAACTCAACAATGTTTTGCGGTTAAGGCTGGAATTGATGGACTGTTGGATATCGCAAGAAGGACGTTCTGTGATACTAGTGAAGCTATACATAATCTTGCTAACAAATATCGAGAGGAGTACAAGTTGCCCAATTTAAAACTGCCATTTAACAATAGGCAGGGGTTTTACTTGAGCATTCCTCATAAAGATGTACAAGGAAAGCTTCCTAGCAAGTTTATTCAGGTCTTGAAGCATGGGAACAATATACGATGCTCTACTCTGGAACTTGCTTCTCTGAATGTTAGAAACAAGTCTGCTGCAGGAGAATGCTATATACGAACAGAAATTTGCCTGGAAGGACTGGTAGATGCCATAAGAGAGGACGTCTCTATACTAACATTGCTCGCAGAAGTCTTGTGTCTCTTAGATATGATTGTCAATTCATTTGCACATGCAATATCAACAAAGCCTGTTGATCGATATACTAGGCCAAACTTTACAGATAATGGCCCAATGGCAATTGAAGCTGCAAGACACCCAATCCTAGAAAGTATACACAACGAATTTGTTGTACGAGCTAACAGCATATTTCTATCGGAAGCATCCAACATGATAATTGTCATGGGTCCAAATATGAGTGGAAAAAGTACCTACCTTCAACAAATGTGCCTCCTAGTTATTCTTGCTCAAATCGGATGTTATGTTCCAGCACATTTCTCAACCTTGAGAGTTGTTGATCGTATATTCACACGAATGGGAACAGATGATAGTCTAGAGTCCAACTCCAGCACGTTCATGACAGAGATGAAGGAAACAGCTTTTTTAATGCAGAATGTCTCCCAAAGGAGTCTTGTTGTCGTGGATGAACTTGGGAGGGCAACTTCTTCCTCCGATGGATTTGCAATTGCATGGAGCTGCTGCGAACATCTTTTGTCACTGAAAGCCTATACCATATTTGCCACGCATATGGAGGGCCTATCAGAGCTAGCAACCATCTATCCAAACGTAAAAATTCTTCACTTCCATGTGGATATAAGGAACAACCGTTTGGATTTCAAGTTTCAATTAAAGGATGGAATAAGACATGTACCACACTATGGCCTTTTATTAGCAGAAGTGGCTGGATTGCCAAGCTCGGTTATTGAAACTGCAAGAGACATTACTTCCAGGATCATGGAGAAGGAAGAAAGACGGATGGAGATAAACTACTTGCAGTATCATCCTATCAGAATGGCCTACATTGTAGCTCAGCGTCTGATATGTTTGAAATACTCCAGCCACGATGAAGATTCAATACGAGAAGCATTACAAAATCTTAAAGAGGGCTACATTAGCGGCAGGCTATGA 2430 40.99 MEDDGGERSSFVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYEPMVILVPPNKLAPDGMVGVSVLVDRFFPTVVMARACFDDTKGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIEAEKGVIVTNHSLLICILKEKYYTQKNLSSGYVTFNGSSDHVSIDATSVQNLEIIEPLHSNLWGTSNKKRSLYNMLKTTKTIGGSRLLRANLLQPLKDIETINARLDCLDELMSNEQLFFGLSQALRKFPKETDRVLCHFCFKQKKVTNEVLRADNAKKSQNLICSIILLKAALEALPLLSKVLKEAKSFLLANIYKSVCENEKFATIRKRIGEVIDEDVLHARVPFIARTQQCFAVKAGIDGLLDIARRTFCDTSEAIHNLANKYREEYKLPNLKLPFNNRQGFYLSIPHKDVQGKLPSKFIQVLKHGNNIRCSTLELASLNVRNKSAAGECYIRTEICLEGLVDAIREDVSILTLLAEVLCLLDMIVNSFAHAISTKPVDRYTRPNFTDNGPMAIEAARHPILESIHNEFVVRANSIFLSEASNMIIVMGPNMSGKSTYLQQMCLLVILAQIGCYVPAHFSTLRVVDRIFTRMGTDDSLESNSSTFMTEMKETAFLMQNVSQRSLVVVDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFATHMEGLSELATIYPNVKILHFHVDIRNNRLDFKFQLKDGIRHVPHYGLLLAEVAGLPSSVIETARDITSRIMEKEERRMEINYLQYHPIRMAYIVAQRLICLKYSSHDEDSIREALQNLKEGYISGRL 809
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4509957 4519320 + ClCG01G004190.1 Cla01g00411 264000

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00411 809 SMART DNAend 205 546 IPR007696 GO:0005524|GO:0006298|GO:0030983
Cla01g00411 809 PANTHER MUTS PROTEIN HOMOLOG 4 46 805 - -
Cla01g00411 809 SUPERFAMILY DNA repair protein MutS, domain III 183 511 IPR036187 -
Cla01g00411 809 Gene3D - 179 350 - -
Cla01g00411 809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 522 751 IPR027417 -
Cla01g00411 809 Pfam MutS family domain IV 378 467 IPR007861 GO:0005524|GO:0006298|GO:0030983
Cla01g00411 809 Pfam MutS domain V 566 752 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cla01g00411 809 Pfam MutS domain III 186 507 IPR007696 GO:0005524|GO:0006298|GO:0030983
Cla01g00411 809 Gene3D - 523 805 IPR027417 -
Cla01g00411 809 PIRSF MSH2 7 802 IPR011184 GO:0005524|GO:0006298|GO:0030983
Cla01g00411 809 Gene3D - 351 485 - -
Cla01g00411 809 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 46 805 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Cla01g00411 809 SMART mutATP5 563 750 IPR000432 GO:0005524|GO:0006298|GO:0030983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00411 K08740 MSH4; DNA mismatch repair protein MSH4 - csv:101210638 1425.22
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g00411 Cla05g00871 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00411 Cla-Chr1:4509957 Cla09g00474 Cla-Chr9:4525416 1.44E-42 dispersed
Cla06g01486 Cla-Chr6:28409307 Cla01g00411 Cla-Chr1:4509957 7.22E-54 transposed
Cla01g00411 Cla-Chr1:4509957 Cla05g00871 Cla-Chr5:8617823 7.90E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g655 . . . . . . . . Cmo16g00135 . . . . . Sed08g0333 . . Bhi01g01330 Tan01g0263 Cmetu06g0071 . Hepe07g0166 Mch10g0163 . Cla01g00411 Cam01g0429 Cec01g0420 Cco01g0442 Clacu01g0430 Cmu01g0412 Cre09g2100 Cone1ag1153 Cone5ag0862 . . Lsi05g01236 . . Cme06g00988 . Blo09g00106 . . . . . . . . . Cma16g00130 . Car16g00115 . . . . . . . . . . Cla05g00871 Cam05g0960 Cec05g0964 Cco05g0964 Clacu05g0946 Cmu05g0903 Cre05g0987 . Csa03g01702 Chy06g00938 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007404 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 2 1 1 1 0 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00411 Cla_Chr01 FPKM 2.262444 3.411076 0.0 0.0 7.629238 9.856787 8.552009 0.0 0.0 0.0