Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g00429 | ATGGCCATTGGGTTTGTGGAAGAAAAAGGAAAAATGGGAATAATGTACCAGAGCACTAAAACAGAGTCCGATTTTGGTTTTCTAGACCCAATTCGCCGCCATTTATTGGGCGAATCGGAGATTTCCGCCGCCAACGCCGCCGCTCCCGGCGGCCGACCCACTCCCGTTTTCAGTCGGAGTGGTAGTTTCAGTAGCTTAATTCCATGTCTTGAAGACAATTGGGGCGATTTGCCTCTCAAGGTTGACGACTCGGAAGATATGATGCTTGCCGCCGTTCTCCGAGATGCCGTCGGTGCCGGATGGGTTCCGTCGCTTGGAAGCTGCGATTTTGGGTTTTCGACGGTGAAATCAGAGCCGGAGGTGCTTCCGGTGAGTTACCCGGTGGTGCTACCGAATGTGACGGTAAAGCCGACGGTGGTACCTGCGAAAGGGAAGCATTATAGAGGAGTGCGGCAACGGCCGTGGGGGAAATTCGCAGCCGAGATTCGAGACCCGGCGAAAAATGGTGCTAGAGTTTGGCTTGGAACTTATGAGACGGCAGAGGATGCGGCGTTAGCTTATGATCGAGCGGCTTATCGAATGCGAGGCTCAAGGGCTCTGCTAAATTTTCCCCTCCGTGTCAACTCCGGCGAGCCCGAACCGGTTAGGGTCACGTCGAAGCGATCGTCACCGGAGGTTTCATCGTCGCCGAAGCGGCGGAAGAAAGTCGGCTCCACCGTAGAAGGTGGAGGAGTACAAGTGGAGCAACAAGTGGCAAGCTTTACACATGGAGGGCAGCTGTTTGTAAGCCAATGCCAACATTTAGCCAATAATTATAAAAAGCTCTTTTAA | 831 | 53.19 | MAIGFVEEKGKMGIMYQSTKTESDFGFLDPIRRHLLGESEISAANAAAPGGRPTPVFSRSGSFSSLIPCLEDNWGDLPLKVDDSEDMMLAAVLRDAVGAGWVPSLGSCDFGFSTVKSEPEVLPVSYPVVLPNVTVKPTVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPEPVRVTSKRSSPEVSSSPKRRKKVGSTVEGGGVQVEQQVASFTHGGQLFVSQCQHLANNYKKLF | 276 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4669402 | 4671654 | + | ClCG01G004400.2 | Cla01g00429 | 264018 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g00429 | 276 | PANTHER | DNA-BINDING DOMAIN | 39 | 246 | IPR044808 | GO:0003700|GO:0009873 | |
Cla01g00429 | 276 | MobiDBLite | consensus disorder prediction | 211 | 242 | - | - | |
Cla01g00429 | 276 | Gene3D | AP2/ERF domain | 145 | 207 | IPR036955 | GO:0003700|GO:0006355 | |
Cla01g00429 | 276 | PRINTS | Ethylene responsive element binding protein signature | 147 | 158 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g00429 | 276 | PRINTS | Ethylene responsive element binding protein signature | 170 | 186 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g00429 | 276 | ProSiteProfiles | AP2/ERF domain profile. | 146 | 204 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g00429 | 276 | SUPERFAMILY | DNA-binding domain | 146 | 206 | IPR016177 | GO:0003677 | |
Cla01g00429 | 276 | PANTHER | BNAANNG21280D PROTEIN | 39 | 246 | - | - | |
Cla01g00429 | 276 | CDD | AP2 | 145 | 204 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g00429 | 276 | SMART | rav1_2 | 146 | 210 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g00429 | 276 | Pfam | AP2 domain | 146 | 196 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g00429 | Cla-Chr1:4669402 | Cla07g01621 | Cla-Chr7:33565079 | 5.78E-49 | dispersed | |
Cla01g00429 | Cla-Chr1:4669402 | Cla10g00229 | Cla-Chr10:2697300 | 3.04E-101 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60363 | PF00847 | AP2 | 1.10E-14 | CL0081 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g00429 | K09286 | - | csv:101221583 | 428.713 |