Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00429 ATGGCCATTGGGTTTGTGGAAGAAAAAGGAAAAATGGGAATAATGTACCAGAGCACTAAAACAGAGTCCGATTTTGGTTTTCTAGACCCAATTCGCCGCCATTTATTGGGCGAATCGGAGATTTCCGCCGCCAACGCCGCCGCTCCCGGCGGCCGACCCACTCCCGTTTTCAGTCGGAGTGGTAGTTTCAGTAGCTTAATTCCATGTCTTGAAGACAATTGGGGCGATTTGCCTCTCAAGGTTGACGACTCGGAAGATATGATGCTTGCCGCCGTTCTCCGAGATGCCGTCGGTGCCGGATGGGTTCCGTCGCTTGGAAGCTGCGATTTTGGGTTTTCGACGGTGAAATCAGAGCCGGAGGTGCTTCCGGTGAGTTACCCGGTGGTGCTACCGAATGTGACGGTAAAGCCGACGGTGGTACCTGCGAAAGGGAAGCATTATAGAGGAGTGCGGCAACGGCCGTGGGGGAAATTCGCAGCCGAGATTCGAGACCCGGCGAAAAATGGTGCTAGAGTTTGGCTTGGAACTTATGAGACGGCAGAGGATGCGGCGTTAGCTTATGATCGAGCGGCTTATCGAATGCGAGGCTCAAGGGCTCTGCTAAATTTTCCCCTCCGTGTCAACTCCGGCGAGCCCGAACCGGTTAGGGTCACGTCGAAGCGATCGTCACCGGAGGTTTCATCGTCGCCGAAGCGGCGGAAGAAAGTCGGCTCCACCGTAGAAGGTGGAGGAGTACAAGTGGAGCAACAAGTGGCAAGCTTTACACATGGAGGGCAGCTGTTTGTAAGCCAATGCCAACATTTAGCCAATAATTATAAAAAGCTCTTTTAA 831 53.19 MAIGFVEEKGKMGIMYQSTKTESDFGFLDPIRRHLLGESEISAANAAAPGGRPTPVFSRSGSFSSLIPCLEDNWGDLPLKVDDSEDMMLAAVLRDAVGAGWVPSLGSCDFGFSTVKSEPEVLPVSYPVVLPNVTVKPTVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPEPVRVTSKRSSPEVSSSPKRRKKVGSTVEGGGVQVEQQVASFTHGGQLFVSQCQHLANNYKKLF 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4669402 4671654 + ClCG01G004400.2 Cla01g00429 264018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00429 276 PANTHER DNA-BINDING DOMAIN 39 246 IPR044808 GO:0003700|GO:0009873
Cla01g00429 276 MobiDBLite consensus disorder prediction 211 242 - -
Cla01g00429 276 Gene3D AP2/ERF domain 145 207 IPR036955 GO:0003700|GO:0006355
Cla01g00429 276 PRINTS Ethylene responsive element binding protein signature 147 158 IPR001471 GO:0003700|GO:0006355
Cla01g00429 276 PRINTS Ethylene responsive element binding protein signature 170 186 IPR001471 GO:0003700|GO:0006355
Cla01g00429 276 ProSiteProfiles AP2/ERF domain profile. 146 204 IPR001471 GO:0003700|GO:0006355
Cla01g00429 276 SUPERFAMILY DNA-binding domain 146 206 IPR016177 GO:0003677
Cla01g00429 276 PANTHER BNAANNG21280D PROTEIN 39 246 - -
Cla01g00429 276 CDD AP2 145 204 IPR001471 GO:0003700|GO:0006355
Cla01g00429 276 SMART rav1_2 146 210 IPR001471 GO:0003700|GO:0006355
Cla01g00429 276 Pfam AP2 domain 146 196 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00429 Cla-Chr1:4669402 Cla07g01621 Cla-Chr7:33565079 5.78E-49 dispersed
Cla01g00429 Cla-Chr1:4669402 Cla10g00229 Cla-Chr10:2697300 3.04E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60363 PF00847 AP2 1.10E-14 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00429 K09286 - csv:101221583 428.713