Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00436 ATGCAAAATGCTCCGCTTTTACTACAATTCCCCATTTTGCCCTCCCCCTTCCCACTCTTCTCTCTTTCACTTCCTTCTCCCACTGCTCCTTCCATTCCATTTCTTAGCTCAATAATCCGTAGACGAGTGAGTGGCGAAAACTTCGGCGTTTCCGTTCTTCGAAAAGGAGTTTGTCTTAGGGCAATGCCTTCTACTGGCGGTGGCGACGGCGACGTTAATGGTGGTGCTTTCTCCGGCTTCAGTCTCACTGAGTCCTCGTTCTTGGCCTCCTTAATGCCTAAGAAGGAAATTGCTGCTGATCGCTTCATCGAGGCTAATCCTGAGTTCGATGGCCGTGGCGTTCTCATTGCGATTTTTGATAGCGGTGTTGACCCTGCTGCTGCGGGATTACAAGTGACGTCGGATGGAAAGCCTAAAATATTGGATATTCTTGATTGTACGGGGAGCGGTGATGTTGATATCTCGAAGGTGGTGAAGGCCGATGGAGACGGTTGCATTATTGGAGCTTCAGGGGCTTCGTTGGTTGTCAATTCTTCGTGGAAGAACCCTTCTGGTGAGTGGCATGTGGGCTATAAATTTGTTTATGAGTTATTTACAGACACATTGACTTCACGTTTGAAGAGAGAGAGAAAGAAGGATTGGGATGAAAAGAACCAGGAGGAGATTGCCAAGGCTGTTAAGGTTCTTGATGACTTTGATCAGAAACACACCAAGATGGAGGACCCAAATCTGAAAAGGGTTCGGGAGGACCTCCAACACCAAGTTGATATTCTTAAAAAACAAGCTGATTGCTATGATGATAAGGGGCCAATCATTGATGCTGTTGTTTGGCACGATGGAGAAGTATGGAGGGTTGCTCTTGACACACAAAGCCTTGAGGATAAGCCTACCTTGGGAAAACTTGCCAACTTTGTACCACTAACAAATTATAAGATTGAAAGAAAGTTTGGCGTGTTTAGCAAGTTGGATGCTTGTACATTTGTTGTTAATGTGTATGATGAGGGAAACATCTTAAGTATAGTTACAGATTGCTCCCCTCATGGTACTCATGTTGCTGGTATTGCTGCTGCGTTCCACCCAAAGGAACCCATGTTGAATGGAGTTGCTCCAGGTGCACAACTGATATCTTGTAAAATTGGAGACACACGTTTAGGGTCAATGGAGACTGGAACCGGGCTGACTCGAGCATTGATAGCAGCTGTGGAGCATAAATGCGATCTCATAAATATGAGTTATGGTGAGCCAACATTACTTCCAGATTATGGTCGCTTTATTGATCTCGTTAATGAGGCGGTAAACAAGTACCGGTTAATATTTGTGAGCAGTGCTGGTAATAGTGGGCCAGCTTTGAATACTGTTGGTGCTCCTGGTGGTACGAGTTCAAGCATTATTGGAGTTGGCGCTTATGTTTCTCCATCAATGGCGGCTGGTGCTCATTGTGTGGTTGAGGCTCCCAGTGAAGGGCTTGAATATACTTGGTCAAGTCGTGGACCAACAGCAGATGGAGATCTTGGTGTTAGTATAAGTGCTCCTGGTGCTGCCGTTGCTCCTGTTCCTACATGGACCCTTCAAAGACGAATGCTTATGAATGGAACCTCTATGGCATCTCCCTCTGCCTGTGGGGGCATTGCATTACTCATTAGTGCAATGAAGGCTGAGAACATTACTGTGAGCCCATATCTTGTGAGGAAGGCTCTTGAGAATACGACCATTCCGGTAGGTTGCTTACCAGAAGATAAATTATCCACTGGACAGGGGCTCATGCAAGTTGACAAGGCATATGAATATATAAGGAAGTCCCACAATGTTCCATATGTTTGGTATAAAGTGAAGATTAATCAATCTGGAAAATTATCTCCCACAACACGGGGAATTTACTTGAGAGAGGCTAGTGCCTGCCGTCAACTTTCTGAGTTTCACGAAGATGCGAATAACTTAGAAGAGTTGGTCCCTTTTGAGGAGTGTATTGCGTTGCATTCCAGTGAAAAAACAGTTGTCACTGTTCCTGATTATTTGCTTCTCACACATAATGGACGCAGCTTCAATTTTCCCTTTCCTCTTTTCGTCGAACTCACTGGAGAGGACTCTGTTTTCTATTCTGATTGTGATCTTCTGGTCTACCTTCGGAAGAGGGTAGGCGTAGTGGTTGATCCTTCCAATCTTAGTGATGGCCTGCACTATTATGAACTGTATGGTGTTGATTGCAAGGCTCCATGGCGGGGTCCTCTTTTCAGAATCCCAGTAACTATAACAAAGCCAGTAGTTGTGGTGGATCGCCCTCCAATAGTTTCTTTTCCAAGAATGTCGTTTCTACCAGGCCATATAGAGCGGAGGTTCATAGAGGTACCACGTGGTGCTAGTTGGGTTGAAGCAACTATACAAACTACAGGATTTGACACAACGAGGAAATTTTTTATTGACACTGTCCAGATTTTGCCCTTGAAAAGGCCTTTGAAGTGGGAGAGCGTGGTAACATTCTCTTCTCCTGCTTCCAAAAGTTTTTGCTTTCCTGTTGTGGGTGGCCAGACTATGGAATTAGCTATTGCTCAATTTTGGTCAAGTGGAATTGGAAGTAGGGAATCATCACTTGTAGATTTTGAGGTAACATTTCATGGGGTTAGTACCAATAAAGATGAAATAGTGCTTGATGGAAGTGAAGCGCCTGTTAGAATTGATGCTGAAGCATTGTTGGCATCAGAAAAACTTGCTCCTGCTGCCATCCTGAACAAGATAAAAGTTCCATATCGGCCATGTGAAGCAAAACTTTGCACACTGACTACGAATCGGGACAGATTGCCTTGTGGGAAACAGATTTTGTCACTGACCCTAACTTACAAGTTCAAATTAGAAGATGTTGCTGAAGTGAAACCTGTTATTCCATTGTTTAATGACCGCATATATGACAACAAATTTGAGTCTCAATTTTATATGATCTCTGACGCGAATAAGCGTATTTATGCTATGGGTGATGCATACCCAGAGTTTAAAAAACTTCCCAAGGGAGAATACAATTTACAGCTACATATAAGGCACGAGGATGTGCAATGTTTGGAAAAAATGAAGCAGTTGGTGGTGTTTATAGAAAGAAAATTGGAGGAGAAGGATACTATTAAATTGAATTTTTTCTCTCAACCCGATGGTCCTATGATGGGGAATGCTGCTTACAAATCCTCAGTTTTAGTTCCTGGGAAAAAAGAAGCATTCTATTTAGGCCCACCATCAAAAGATAAGTTTCCTAAGAATTCTCCTCAAGGATCGGTTCTCTTGGGAGCAATCTCATATGCGAAACTAGGTATTGTTAGTTCAAGTGACAAGGAAAGTTCACGGAAAATGCCTGCATATTTTCAAATCTCTTGCATAGTGCCACCAAATAAGCCCGATGAGGACAAGGGTAAAGGTTCTTCTCCAGCCTCAACAAAGACAATGTCTGAGCGTCTAATAGAAGAGGTGCGTGATGCGAAGATCAAATTTCTTTCAAGCCTAAAACCAGAAAGCAATGAAGAGTTTTCAGAATGGAAGAAATTGTGCTCATCCCTTAAGAGTGAATATCCAAACTACACTCCGCTGCTTTCAAAAGTATTGGAAGGTTTGGTTTCTCAGAGAAATATTGAGGACAGAAGCTGCCATGATGAAGAGGTCATCGATGCTGCAAATGAGGTAGTTGATAGCATAGACAGAGATGAGCTGGCCAAGTATTTTGCACTGAAAAATGACCCAGAAGATGAAGACGTGGAGAAAATCAAGAAGAAGATGGAGGCTACCCGTGATCAATTGGCAGAGGCACTATACCAAAAAGGGATAGCCTTGGCAGAATCGGATTCTTCTAAGACCAAGGTTGAGAGTGCTTCAACACTTGTTCCAGAAGATGCAGAAGATGCTGGAAAGTCTGAGGATCCTTTTGAAGAGAATTTCAGAGAACTGAGGAAATGGGTGGATGTTAAGTCTTCTAAGTTTGGAACTCTTGCAGTGTTGCGCGAAAAACGCTGTGGGAGGCTAGGCACAGCTTTGAAGGTGATCAATGATGTTATTGAAAATCATGGGGAGCCTGCCAAGAAGAAACTCTATGAACTGAAGTTGTCTTTGCTTGAGGAGATTGGTTGGTCTCATTTGGTATCATATGAAAAGCAATGGATGCACGTACGTTTTCCTACAAGCCTGCCTCTATTTTAA 4170 43.33 MQNAPLLLQFPILPSPFPLFSLSLPSPTAPSIPFLSSIIRRRVSGENFGVSVLRKGVCLRAMPSTGGGDGDVNGGAFSGFSLTESSFLASLMPKKEIAADRFIEANPEFDGRGVLIAIFDSGVDPAAAGLQVTSDGKPKILDILDCTGSGDVDISKVVKADGDGCIIGASGASLVVNSSWKNPSGEWHVGYKFVYELFTDTLTSRLKRERKKDWDEKNQEEIAKAVKVLDDFDQKHTKMEDPNLKRVREDLQHQVDILKKQADCYDDKGPIIDAVVWHDGEVWRVALDTQSLEDKPTLGKLANFVPLTNYKIERKFGVFSKLDACTFVVNVYDEGNILSIVTDCSPHGTHVAGIAAAFHPKEPMLNGVAPGAQLISCKIGDTRLGSMETGTGLTRALIAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKYRLIFVSSAGNSGPALNTVGAPGGTSSSIIGVGAYVSPSMAAGAHCVVEAPSEGLEYTWSSRGPTADGDLGVSISAPGAAVAPVPTWTLQRRMLMNGTSMASPSACGGIALLISAMKAENITVSPYLVRKALENTTIPVGCLPEDKLSTGQGLMQVDKAYEYIRKSHNVPYVWYKVKINQSGKLSPTTRGIYLREASACRQLSEFHEDANNLEELVPFEECIALHSSEKTVVTVPDYLLLTHNGRSFNFPFPLFVELTGEDSVFYSDCDLLVYLRKRVGVVVDPSNLSDGLHYYELYGVDCKAPWRGPLFRIPVTITKPVVVVDRPPIVSFPRMSFLPGHIERRFIEVPRGASWVEATIQTTGFDTTRKFFIDTVQILPLKRPLKWESVVTFSSPASKSFCFPVVGGQTMELAIAQFWSSGIGSRESSLVDFEVTFHGVSTNKDEIVLDGSEAPVRIDAEALLASEKLAPAAILNKIKVPYRPCEAKLCTLTTNRDRLPCGKQILSLTLTYKFKLEDVAEVKPVIPLFNDRIYDNKFESQFYMISDANKRIYAMGDAYPEFKKLPKGEYNLQLHIRHEDVQCLEKMKQLVVFIERKLEEKDTIKLNFFSQPDGPMMGNAAYKSSVLVPGKKEAFYLGPPSKDKFPKNSPQGSVLLGAISYAKLGIVSSSDKESSRKMPAYFQISCIVPPNKPDEDKGKGSSPASTKTMSERLIEEVRDAKIKFLSSLKPESNEEFSEWKKLCSSLKSEYPNYTPLLSKVLEGLVSQRNIEDRSCHDEEVIDAANEVVDSIDRDELAKYFALKNDPEDEDVEKIKKKMEATRDQLAEALYQKGIALAESDSSKTKVESASTLVPEDAEDAGKSEDPFEENFRELRKWVDVKSSKFGTLAVLREKRCGRLGTALKVINDVIENHGEPAKKKLYELKLSLLEEIGWSHLVSYEKQWMHVRFPTSLPLF 1389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4714009 4736934 - ClCG01G004440.1 Cla01g00436 264025

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00436 1389 PANTHER PEPTIDASE S8 694 1290 - -
Cla01g00436 1389 SUPERFAMILY Subtilisin-like 97 606 IPR036852 GO:0004252|GO:0006508
Cla01g00436 1389 PANTHER TRIPEPTIDYL PEPTIDASE II 73 683 - -
Cla01g00436 1389 Gene3D Peptidase S8/S53 domain 272 604 IPR036852 GO:0004252|GO:0006508
Cla01g00436 1389 Gene3D Peptidase S8/S53 domain 94 187 IPR036852 GO:0004252|GO:0006508
Cla01g00436 1389 Pfam Tripeptidyl peptidase II 897 1081 IPR022229 -
Cla01g00436 1389 Coils Coil 1244 1264 - -
Cla01g00436 1389 ProSitePatterns Serine proteases, subtilase family, histidine active site. 347 357 IPR022398 -
Cla01g00436 1389 ProSiteProfiles Serine proteases, subtilase domain profile. 85 594 - -
Cla01g00436 1389 Gene3D - 607 686 - -
Cla01g00436 1389 Gene3D - 692 762 - -
Cla01g00436 1389 Coils Coil 248 268 - -
Cla01g00436 1389 PRINTS Subtilisin serine protease family (S8) signature 111 130 IPR015500 -
Cla01g00436 1389 PRINTS Subtilisin serine protease family (S8) signature 343 356 IPR015500 -
Cla01g00436 1389 PRINTS Subtilisin serine protease family (S8) signature 530 546 IPR015500 -
Cla01g00436 1389 PANTHER TRIPEPTIDYL PEPTIDASE II 694 1290 - -
Cla01g00436 1389 Gene3D - 1140 1389 - -
Cla01g00436 1389 MobiDBLite consensus disorder prediction 1278 1298 - -
Cla01g00436 1389 Pfam Subtilase family 111 570 IPR000209 GO:0006508|GO:0008236
Cla01g00436 1389 PANTHER PEPTIDASE S8 73 683 - -
Cla01g00436 1389 MobiDBLite consensus disorder prediction 1124 1143 - -
Cla01g00436 1389 CDD Peptidases_S8_Tripeptidyl_Aminopeptidase_II 91 573 IPR034051 GO:0006508|GO:0008240
Cla01g00436 1389 ProSitePatterns Serine proteases, subtilase family, serine active site. 531 541 IPR023828 -
Cla01g00436 1389 Gene3D - 210 267 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00436 K01280 TPP2; tripeptidyl-peptidase II [EC:3.4.14.10] - csv:101220162 2455.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00436 Cla-Chr1:4714009 Cla06g00853 Cla-Chr6:12747249 6.24E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g697 Blo06g01128 . . . . . . . . . . Cma15g01096 . Car15g01007 . . . . . . . . . . Cla01g00436 . . Cco01g0470 . . Cre09g2075 . Cone5ag0871 . . . . . . . . . Bda15g00725 . . Bma08g00301 . . . Cmo15g01154 . . . . . Cpe13g00255 Bhi12g00508 . . . . . Lcy12g0027 . . . . . . . . . . Cme09g01554
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005749 1 1 2 3 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00436 Cla_Chr01 FPKM 8.430025 9.599819 5.840413 7.054487 0.0 0.0 0.196212 0.361288 0.307972 0.139599