Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g00446 | ATGCCTTCATGGTGGGGGAAGTCATCATCAAAAGAAGTAAAGAAGAGCAAGGAAAGTTTAATCGACACATTGCAGAGAAAACTTAGAACTACTGATGGTAAAACAAACAGCAAATCAGGAGAGTCTCCAAGAAATTGTAATGACACAATTTCTGAACAGGGATCTCGATCTCCTATTATTTCAAGATCAGTTTCCCCTTCCAGACAAGTTTCAAGATGTCAAAGCTTTTCTGAAAGGCCACAAGCACAACCTCTTCCTCTTCCTGGTTTGCAGCCACCAATTGTAGGTCGTACAGACTCTGGGATTAGTATTTCACCAAAACCAAGATCTGAAAGGGGCTCCAAGCCATCATCATTTCTACCACTTCCAAGACCAGCATGCATTCGTGGGAGGCCAAACCATGCAGATTTAGATGCAGATGTTGGTGTTGGCTCAGTGTCCAGTGAGAGCTCAACTGATAGCACGGATCTATCGGATTCACGCCATCGTAGTCCTCAGGCAACTGACTATGATCTTGGGACTAAAACTGCTGCAGGCAGTCCTTCCAGTGTCATTCTCAAGGATCAGTCTTCTACTGTCACCCAACCAAGTTCGCAAAAGGCCAGCAAACCGGCAAATATCTCATTGAGCAACCACATTTTCTCAACATCACCCAAGCGGAGGCCTTTAAGCAGCCATGTTCCAAATCTGCAAGTTCCATATCATGGGAATTCCTGCATTCCTCCAGAAAGTTCAATGTCAAGTCCTTCTAGAAGTCCCATAAGGGCATTTAGCACAGAGCAAGTTATAAATAATGCTGTCAGTGCTGGGAAGCTCTATATGGATGTCACATTTCCTGGGTCAGGCCATTGTTCCAGTCCTGGTTCTGGTTACAATTCTGGCCATAATTCTATGGGTGGGGATTTGTCAGGGCAGTTATTTTTACAACAAAGTCGGGGTAGCCCTGAATATTCTCCAGCACCCAGTCCCAGAATGACCAGCCCTGGCCCAAGCTCCAGAGTCCATAGTGGTGCAGTGACCCCAATTCATCCTAGGGCGGGAGGTATACCCACTGAGTCGCAGACAAGCTGGCCTGATGAGAAGCAAACTCACCGCTTGCCTCTACCTCCGGTTTCAATTTCCAATGCTCCCTTTTCTCATTCCAATTCAGCAGCAACATCTCCCTCTGTTCCAAGAAGTCCTGGAAGGGCTGATAATCCAGCAAGTCCAGGCTCCCGTTGGAAAAAGGGGAAGCTTTTGGGTAGGGGTACTTTTGGTCATGTGTATGTTGGTTTTAACAGTGAAAGTGGTGGAATGTGTGCAATGAAGGAAGTTACATTATTTTCAGATGATGCAAAGTCCAAGGAGAGTGCCAAGCAATTAATGCAAGAAATTACCTTGTTGAGTCGTTTACAGCATCCAAATATTGTGCAGTACTATGGATCTGAAACGGTTGGCGACAGGCTTTACATTTACCTTGAATATGTATCTGGTGGCTCTATTTACAAGCTTCTCCAGGAATATGGACAGCTTGGAGAATCAGCACTTCGTATTTATACTAAGCAAATATTGTCTGGGCTTGCATATTTACATGCTACAAATACTGTTCACAGTTTAGTTTTCTTTAAAAGGGATATCAAAGGAGCAAATCTACTTGTCGATCCCACTGGTGTAGTTAAGTTGGCTGACTTTGGGATGGCAAAACATATCACCGGGCAATCATGCCCTTTGTCTTTTAAAGGAAGCCCGTACTGGATGGCACCTGAGGTTATTAAAAACTCAAATGGTTGCAACCTTGCGGTAGATATTTGGAGTCTTGGATGCACTGTTTTGGAGATGGCAACAACAAAACCTCCTTGGAGTCAATATGAGGGAGTCGCTGCAATGTTCAAGATTGGCAACAGCAAAGAACTTCCTGAAATCCCGGATCACCTTTCACATGATGGAAAAGACTTTGTTAGACAATGTTTGCAACGGAATCCTGCTCATCGTCCTACAGCTGCTCAGCTTTTGGAACATCCTTTTGTCAAAGATGTAACAACTCATGAAAGACCGATTTTAGGTTCTGAATATTCAGATCCCACTCCAGGACTTACAAATGGAGTAAGAAGTCTGGGTATTGAGCAAGGAAGGAATCCCAGCTTCTTGGATTCTGATAGATCTGCAGCTCATTCATCTAGACTCACAACAGCTGCTTTCCATTCCAGTGATTTCCATATTCCAAGGAACCTATCATGTCCTGTTTCGCCCATCGGAAGCCCTCTGGTACACTCACGGTCGCCACAACATCCCAGTGGAAGAATGTCTCCGTCACCCATCTCCAGCCCTCGTAATATGTCGGGTGCATCCACTCCTCTCACGGGAGGAAGCGGTGCCATTCCACACCAGCATCTCAAGCAATCACTGTACCTACAGGAGGGTTTTGGGAGCTTGCCAAAGCCTTCAATAGCACCCTATAGTAATGGCCCTTCCTATCACGATAGGAACCCTGACATCTTTCAGGGGATTCAGCCAGGCTCTCACATCTTCTCTGAGCTGGTACACCATGAAACTGATTTTCTGGGTAAGCAGTTTGGAAAGCCTGCCTGGGAATTGTATGACAGGCAGGCGGTCTTGGCTGATCGTGTTTCTAGGCAGCTGCTGAGTGATCACATAACAACTCCCTCCCTGGATTTAAAAACTAAGCAGTGTCGTGTCATAAAAGACTGCAACAAACGATTCTGTGCAGTAAGGTCTGATATCTTGAAACAGAAGAACTGGAGACAGCTGAATTTCACTGTCACATGGTGTACAAGGGTTATGTCAACGTAG | 2790 | 45.34 | MPSWWGKSSSKEVKKSKESLIDTLQRKLRTTDGKTNSKSGESPRNCNDTISEQGSRSPIISRSVSPSRQVSRCQSFSERPQAQPLPLPGLQPPIVGRTDSGISISPKPRSERGSKPSSFLPLPRPACIRGRPNHADLDADVGVGSVSSESSTDSTDLSDSRHRSPQATDYDLGTKTAAGSPSSVILKDQSSTVTQPSSQKASKPANISLSNHIFSTSPKRRPLSSHVPNLQVPYHGNSCIPPESSMSSPSRSPIRAFSTEQVINNAVSAGKLYMDVTFPGSGHCSSPGSGYNSGHNSMGGDLSGQLFLQQSRGSPEYSPAPSPRMTSPGPSSRVHSGAVTPIHPRAGGIPTESQTSWPDEKQTHRLPLPPVSISNAPFSHSNSAATSPSVPRSPGRADNPASPGSRWKKGKLLGRGTFGHVYVGFNSESGGMCAMKEVTLFSDDAKSKESAKQLMQEITLLSRLQHPNIVQYYGSETVGDRLYIYLEYVSGGSIYKLLQEYGQLGESALRIYTKQILSGLAYLHATNTVHSLVFFKRDIKGANLLVDPTGVVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPEIPDHLSHDGKDFVRQCLQRNPAHRPTAAQLLEHPFVKDVTTHERPILGSEYSDPTPGLTNGVRSLGIEQGRNPSFLDSDRSAAHSSRLTTAAFHSSDFHIPRNLSCPVSPIGSPLVHSRSPQHPSGRMSPSPISSPRNMSGASTPLTGGSGAIPHQHLKQSLYLQEGFGSLPKPSIAPYSNGPSYHDRNPDIFQGIQPGSHIFSELVHHETDFLGKQFGKPAWELYDRQAVLADRVSRQLLSDHITTPSLDLKTKQCRVIKDCNKRFCAVRSDILKQKNWRQLNFTVTWCTRVMST | 929 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4840377 | 4848658 | + | ClCG01G004530.2 | Cla01g00446 | 264035 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g00446 | 929 | ProSitePatterns | Protein kinases ATP-binding region signature. | 413 | 436 | IPR017441 | GO:0005524 | |
Cla01g00446 | 929 | MobiDBLite | consensus disorder prediction | 742 | 787 | - | - | |
Cla01g00446 | 929 | MobiDBLite | consensus disorder prediction | 10 | 34 | - | - | |
Cla01g00446 | 929 | SMART | serkin_6 | 407 | 669 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla01g00446 | 929 | SUPERFAMILY | Protein kinase-like (PK-like) | 405 | 760 | IPR011009 | - | |
Cla01g00446 | 929 | MobiDBLite | consensus disorder prediction | 1 | 208 | - | - | |
Cla01g00446 | 929 | ProSiteProfiles | Protein kinase domain profile. | 407 | 669 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla01g00446 | 929 | MobiDBLite | consensus disorder prediction | 748 | 783 | - | - | |
Cla01g00446 | 929 | MobiDBLite | consensus disorder prediction | 282 | 317 | - | - | |
Cla01g00446 | 929 | CDD | STKc_MEKK1_plant | 406 | 669 | - | - | |
Cla01g00446 | 929 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 1 | 817 | - | - | |
Cla01g00446 | 929 | MobiDBLite | consensus disorder prediction | 35 | 81 | - | - | |
Cla01g00446 | 929 | Gene3D | Transferase(Phosphotransferase) domain 1 | 405 | 686 | - | - | |
Cla01g00446 | 929 | Pfam | Protein kinase domain | 408 | 669 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla01g00446 | 929 | MobiDBLite | consensus disorder prediction | 282 | 410 | - | - | |
Cla01g00446 | 929 | MobiDBLite | consensus disorder prediction | 169 | 208 | - | - | |
Cla01g00446 | 929 | MobiDBLite | consensus disorder prediction | 374 | 393 | - | - | |
Cla01g00446 | 929 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA | 1 | 817 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g00446 | Cla-Chr1:4840377 | Cla01g01631 | Cla-Chr1:31110216 | 5.26E-88 | dispersed | |
Cla01g01512 | Cla-Chr1:29593529 | Cla01g00446 | Cla-Chr1:4840377 | 1.21E-143 | transposed | |
Cla02g01554 | Cla-Chr2:30214044 | Cla01g00446 | Cla-Chr1:4840377 | 1.33E-71 | transposed | |
Cla03g00876 | Cla-Chr3:12031271 | Cla01g00446 | Cla-Chr1:4840377 | 1.08E-33 | transposed | |
Cla03g00888 | Cla-Chr3:12468569 | Cla01g00446 | Cla-Chr1:4840377 | 4.09E-20 | transposed | |
Cla06g00558 | Cla-Chr6:6766067 | Cla01g00446 | Cla-Chr1:4840377 | 1.69E-80 | transposed | |
Cla10g01130 | Cla-Chr10:25779495 | Cla01g00446 | Cla-Chr1:4840377 | 6.20E-39 | transposed | |
Cla01g00446 | Cla-Chr1:4840377 | Cla05g00892 | Cla-Chr5:8826684 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80234 | PF00069 | Pkinase | 3.90E-67 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g00446 | K20717 | - | csv:101222716 | 1602.03 |