Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00446 ATGCCTTCATGGTGGGGGAAGTCATCATCAAAAGAAGTAAAGAAGAGCAAGGAAAGTTTAATCGACACATTGCAGAGAAAACTTAGAACTACTGATGGTAAAACAAACAGCAAATCAGGAGAGTCTCCAAGAAATTGTAATGACACAATTTCTGAACAGGGATCTCGATCTCCTATTATTTCAAGATCAGTTTCCCCTTCCAGACAAGTTTCAAGATGTCAAAGCTTTTCTGAAAGGCCACAAGCACAACCTCTTCCTCTTCCTGGTTTGCAGCCACCAATTGTAGGTCGTACAGACTCTGGGATTAGTATTTCACCAAAACCAAGATCTGAAAGGGGCTCCAAGCCATCATCATTTCTACCACTTCCAAGACCAGCATGCATTCGTGGGAGGCCAAACCATGCAGATTTAGATGCAGATGTTGGTGTTGGCTCAGTGTCCAGTGAGAGCTCAACTGATAGCACGGATCTATCGGATTCACGCCATCGTAGTCCTCAGGCAACTGACTATGATCTTGGGACTAAAACTGCTGCAGGCAGTCCTTCCAGTGTCATTCTCAAGGATCAGTCTTCTACTGTCACCCAACCAAGTTCGCAAAAGGCCAGCAAACCGGCAAATATCTCATTGAGCAACCACATTTTCTCAACATCACCCAAGCGGAGGCCTTTAAGCAGCCATGTTCCAAATCTGCAAGTTCCATATCATGGGAATTCCTGCATTCCTCCAGAAAGTTCAATGTCAAGTCCTTCTAGAAGTCCCATAAGGGCATTTAGCACAGAGCAAGTTATAAATAATGCTGTCAGTGCTGGGAAGCTCTATATGGATGTCACATTTCCTGGGTCAGGCCATTGTTCCAGTCCTGGTTCTGGTTACAATTCTGGCCATAATTCTATGGGTGGGGATTTGTCAGGGCAGTTATTTTTACAACAAAGTCGGGGTAGCCCTGAATATTCTCCAGCACCCAGTCCCAGAATGACCAGCCCTGGCCCAAGCTCCAGAGTCCATAGTGGTGCAGTGACCCCAATTCATCCTAGGGCGGGAGGTATACCCACTGAGTCGCAGACAAGCTGGCCTGATGAGAAGCAAACTCACCGCTTGCCTCTACCTCCGGTTTCAATTTCCAATGCTCCCTTTTCTCATTCCAATTCAGCAGCAACATCTCCCTCTGTTCCAAGAAGTCCTGGAAGGGCTGATAATCCAGCAAGTCCAGGCTCCCGTTGGAAAAAGGGGAAGCTTTTGGGTAGGGGTACTTTTGGTCATGTGTATGTTGGTTTTAACAGTGAAAGTGGTGGAATGTGTGCAATGAAGGAAGTTACATTATTTTCAGATGATGCAAAGTCCAAGGAGAGTGCCAAGCAATTAATGCAAGAAATTACCTTGTTGAGTCGTTTACAGCATCCAAATATTGTGCAGTACTATGGATCTGAAACGGTTGGCGACAGGCTTTACATTTACCTTGAATATGTATCTGGTGGCTCTATTTACAAGCTTCTCCAGGAATATGGACAGCTTGGAGAATCAGCACTTCGTATTTATACTAAGCAAATATTGTCTGGGCTTGCATATTTACATGCTACAAATACTGTTCACAGTTTAGTTTTCTTTAAAAGGGATATCAAAGGAGCAAATCTACTTGTCGATCCCACTGGTGTAGTTAAGTTGGCTGACTTTGGGATGGCAAAACATATCACCGGGCAATCATGCCCTTTGTCTTTTAAAGGAAGCCCGTACTGGATGGCACCTGAGGTTATTAAAAACTCAAATGGTTGCAACCTTGCGGTAGATATTTGGAGTCTTGGATGCACTGTTTTGGAGATGGCAACAACAAAACCTCCTTGGAGTCAATATGAGGGAGTCGCTGCAATGTTCAAGATTGGCAACAGCAAAGAACTTCCTGAAATCCCGGATCACCTTTCACATGATGGAAAAGACTTTGTTAGACAATGTTTGCAACGGAATCCTGCTCATCGTCCTACAGCTGCTCAGCTTTTGGAACATCCTTTTGTCAAAGATGTAACAACTCATGAAAGACCGATTTTAGGTTCTGAATATTCAGATCCCACTCCAGGACTTACAAATGGAGTAAGAAGTCTGGGTATTGAGCAAGGAAGGAATCCCAGCTTCTTGGATTCTGATAGATCTGCAGCTCATTCATCTAGACTCACAACAGCTGCTTTCCATTCCAGTGATTTCCATATTCCAAGGAACCTATCATGTCCTGTTTCGCCCATCGGAAGCCCTCTGGTACACTCACGGTCGCCACAACATCCCAGTGGAAGAATGTCTCCGTCACCCATCTCCAGCCCTCGTAATATGTCGGGTGCATCCACTCCTCTCACGGGAGGAAGCGGTGCCATTCCACACCAGCATCTCAAGCAATCACTGTACCTACAGGAGGGTTTTGGGAGCTTGCCAAAGCCTTCAATAGCACCCTATAGTAATGGCCCTTCCTATCACGATAGGAACCCTGACATCTTTCAGGGGATTCAGCCAGGCTCTCACATCTTCTCTGAGCTGGTACACCATGAAACTGATTTTCTGGGTAAGCAGTTTGGAAAGCCTGCCTGGGAATTGTATGACAGGCAGGCGGTCTTGGCTGATCGTGTTTCTAGGCAGCTGCTGAGTGATCACATAACAACTCCCTCCCTGGATTTAAAAACTAAGCAGTGTCGTGTCATAAAAGACTGCAACAAACGATTCTGTGCAGTAAGGTCTGATATCTTGAAACAGAAGAACTGGAGACAGCTGAATTTCACTGTCACATGGTGTACAAGGGTTATGTCAACGTAG 2790 45.34 MPSWWGKSSSKEVKKSKESLIDTLQRKLRTTDGKTNSKSGESPRNCNDTISEQGSRSPIISRSVSPSRQVSRCQSFSERPQAQPLPLPGLQPPIVGRTDSGISISPKPRSERGSKPSSFLPLPRPACIRGRPNHADLDADVGVGSVSSESSTDSTDLSDSRHRSPQATDYDLGTKTAAGSPSSVILKDQSSTVTQPSSQKASKPANISLSNHIFSTSPKRRPLSSHVPNLQVPYHGNSCIPPESSMSSPSRSPIRAFSTEQVINNAVSAGKLYMDVTFPGSGHCSSPGSGYNSGHNSMGGDLSGQLFLQQSRGSPEYSPAPSPRMTSPGPSSRVHSGAVTPIHPRAGGIPTESQTSWPDEKQTHRLPLPPVSISNAPFSHSNSAATSPSVPRSPGRADNPASPGSRWKKGKLLGRGTFGHVYVGFNSESGGMCAMKEVTLFSDDAKSKESAKQLMQEITLLSRLQHPNIVQYYGSETVGDRLYIYLEYVSGGSIYKLLQEYGQLGESALRIYTKQILSGLAYLHATNTVHSLVFFKRDIKGANLLVDPTGVVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPEIPDHLSHDGKDFVRQCLQRNPAHRPTAAQLLEHPFVKDVTTHERPILGSEYSDPTPGLTNGVRSLGIEQGRNPSFLDSDRSAAHSSRLTTAAFHSSDFHIPRNLSCPVSPIGSPLVHSRSPQHPSGRMSPSPISSPRNMSGASTPLTGGSGAIPHQHLKQSLYLQEGFGSLPKPSIAPYSNGPSYHDRNPDIFQGIQPGSHIFSELVHHETDFLGKQFGKPAWELYDRQAVLADRVSRQLLSDHITTPSLDLKTKQCRVIKDCNKRFCAVRSDILKQKNWRQLNFTVTWCTRVMST 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4840377 4848658 + ClCG01G004530.2 Cla01g00446 264035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00446 929 ProSitePatterns Protein kinases ATP-binding region signature. 413 436 IPR017441 GO:0005524
Cla01g00446 929 MobiDBLite consensus disorder prediction 742 787 - -
Cla01g00446 929 MobiDBLite consensus disorder prediction 10 34 - -
Cla01g00446 929 SMART serkin_6 407 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00446 929 SUPERFAMILY Protein kinase-like (PK-like) 405 760 IPR011009 -
Cla01g00446 929 MobiDBLite consensus disorder prediction 1 208 - -
Cla01g00446 929 ProSiteProfiles Protein kinase domain profile. 407 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00446 929 MobiDBLite consensus disorder prediction 748 783 - -
Cla01g00446 929 MobiDBLite consensus disorder prediction 282 317 - -
Cla01g00446 929 CDD STKc_MEKK1_plant 406 669 - -
Cla01g00446 929 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 817 - -
Cla01g00446 929 MobiDBLite consensus disorder prediction 35 81 - -
Cla01g00446 929 Gene3D Transferase(Phosphotransferase) domain 1 405 686 - -
Cla01g00446 929 Pfam Protein kinase domain 408 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00446 929 MobiDBLite consensus disorder prediction 282 410 - -
Cla01g00446 929 MobiDBLite consensus disorder prediction 169 208 - -
Cla01g00446 929 MobiDBLite consensus disorder prediction 374 393 - -
Cla01g00446 929 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 817 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00446 Cla-Chr1:4840377 Cla01g01631 Cla-Chr1:31110216 5.26E-88 dispersed
Cla01g01512 Cla-Chr1:29593529 Cla01g00446 Cla-Chr1:4840377 1.21E-143 transposed
Cla02g01554 Cla-Chr2:30214044 Cla01g00446 Cla-Chr1:4840377 1.33E-71 transposed
Cla03g00876 Cla-Chr3:12031271 Cla01g00446 Cla-Chr1:4840377 1.08E-33 transposed
Cla03g00888 Cla-Chr3:12468569 Cla01g00446 Cla-Chr1:4840377 4.09E-20 transposed
Cla06g00558 Cla-Chr6:6766067 Cla01g00446 Cla-Chr1:4840377 1.69E-80 transposed
Cla10g01130 Cla-Chr10:25779495 Cla01g00446 Cla-Chr1:4840377 6.20E-39 transposed
Cla01g00446 Cla-Chr1:4840377 Cla05g00892 Cla-Chr5:8826684 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80234 PF00069 Pkinase 3.90E-67 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00446 K20717 - csv:101222716 1602.03