Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00450 ATGTGCATACTTATAAATGACTTGCTTTCCCCATTGCTCAGGAGCTTTGATGCTAAGAGTTGCATAATTATGGAGGGGATGGAAGATGAATCCAATAGAAATCTTATGTTGCTGCCTTCCCCTTCTCCAGTTGTAGCCGTTGCTATCAGTGGGAAGAAAAACAGTAAATATATAATTAGGTGGTCATTGGATAAGTTTCTACCTGAGGGCATCACTGATTTCAAGTTGCTACACGTCATCCCAAGGATTACTAGTGTTCCAACGCCAAGTAAACTTTGCCTAGATTGCATATTCAAGCTATATGCCAATGTTGATGCAGTGGGAAACTCAATTCCAATTTCACAAGTTCGTGATGATGTCGCTGCGGCTTACAGGAAAGAAATCGGGTGGCAGACAAGTGAAAAACTTCTTCCATATAAGAAGATGTTTGCTGAGAGAAAGGTTCATCTTGATATTGCAACTCTTGAAGCAGATGATGTGGCAAATACAATAATAGAAGAGGTTACAAAATGTTCAATCAACAAGCTTGTTATAGGAGTTTCTTCACAGGGATTATTCTCAAGATGTCAATCCGTTGATATTGAGAATCAGGTGGATGGAGTTCATTCTTCTTCCTATGCTTCCGATTGTGCACAAACATTGAGTCGAACCTCTAGTTGTAAAAGCTTGCCAGCAGATTACCAGTCCTGGGTTACTGATGAAGCTTCATCCACAGGCGCGTTCAATGATTATCCTTCATGTGAAAGTCAGGCGGATGTGAGCTTTGAGCTTGAAAAGTTGAGAATCGAACTAAGACATGCGAGAGGAATGTATGCAATTGCTCAACGTGAGACAATTGATGCCTCTCGAAAGCTGAACCATCTAAGTAAGCAACGAACAGAGGAAGCTAGGAAGCTTGAAGAGATCAACAATAAAGAGGTAGCCACCAAAAAACTTGCAAGGGAAGAGAGAGAGAAACGTGAAGCTTTGAGAAGAGAAGCTAAGTATTTAAAAGAAAGCGCTGAAAGAGAGGGCATCTATAGGAAGGAAGCAGAGACAAAAGCTCTTCAGGATGCCAAAGAGAAGGGAAAGCATGAAAGTGTTCTTCAAGGACCTCTGCAGCAATACCAATATTTTCAGTGGGAAGATATTGTTTCTGCCACATCATCTTTCTCTGAGGATCTTAAGATTGGAATGGGAGCACATGGAACAGTTTATAAGTGCAGCTTGCATCATACAACTGTAGCAGTGAAGGTTCTTCACTCTAGAGATGATCACAAAAAGATGCAATTTCTTCAGGAGCTTGAAATCTTGAGCAAAATCCATCACCCCCATCTACTATTACTCCTCGGTGCGTGTCCGGATAAGAATTGTCTGGTTTATGAGTACATGGAAAATGGTAGCTTGGAGGATAGGTTATACCACAGAGGCAATACACCTGCAATCCCATGGTATGAGAGGTTTCGAATTGCTTGGGAAATAGCTTCTGCTCTTGTCTTTCTTCACAGCTCAAAACCAAAACCCATAATCCACCGTGACCTTAAACCAGCAAACATCTTACTTGACCAAAACCTGGTGAGCAAAATCGGCGACGTCGGTCTTTCTACAGTGTTTAATTCAGACCCTTTAATGTCTACTGCATTCATGAATAGTGGACCAGTTGGGACTCTCTGCTACATAGATCCCGAGTATCAACGAACTGGGTTACTCTCGCCTAAGTCTGATGTATATGCCTTTGGAATGGTGATCTTGCAGTTACTAACTGCAAAACCAGCAGTAGCACTAACCCATGTGGTGGAAACAGCCATTGATAACTGCACTTTAATTAATGTTCTGGATATAGAGGCTGGGGATTGGCCCGTCGAAGAGACGTATGAATTGGCAAGATTAGGACTTCGCTGCACCGAGATGCAACGTAAAGATAGGCCTGACTTAAAGGATCAAGTGCTTCCCTTGTTGCTGACACTGAAAGAAGTTGCTGACGAGGCACGCAATTTGGCCTCCAAAGTTCCACCTGCAATTCCTAATCATTTCATCTGTCCAATTCTTCAGGATGTGATGAATGACCCTTGTGTGGCGGCGGATGGATACACATACGATCGTCAGGCAATAGAGAAGTGGATTCAGGAGAACGATAATTCACCCATAACGATGTTGCCGTTGCCACATAAGAATTTAATACCAAATTACAATCTACTCTCTGCAATTGTTGAGTGGAACTCCAGAAAAAATTAA 2214 42.14 MCILINDLLSPLLRSFDAKSCIIMEGMEDESNRNLMLLPSPSPVVAVAISGKKNSKYIIRWSLDKFLPEGITDFKLLHVIPRITSVPTPSKLCLDCIFKLYANVDAVGNSIPISQVRDDVAAAYRKEIGWQTSEKLLPYKKMFAERKVHLDIATLEADDVANTIIEEVTKCSINKLVIGVSSQGLFSRCQSVDIENQVDGVHSSSYASDCAQTLSRTSSCKSLPADYQSWVTDEASSTGAFNDYPSCESQADVSFELEKLRIELRHARGMYAIAQRETIDASRKLNHLSKQRTEEARKLEEINNKEVATKKLAREEREKREALRREAKYLKESAEREGIYRKEAETKALQDAKEKGKHESVLQGPLQQYQYFQWEDIVSATSSFSEDLKIGMGAHGTVYKCSLHHTTVAVKVLHSRDDHKKMQFLQELEILSKIHHPHLLLLLGACPDKNCLVYEYMENGSLEDRLYHRGNTPAIPWYERFRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDQNLVSKIGDVGLSTVFNSDPLMSTAFMNSGPVGTLCYIDPEYQRTGLLSPKSDVYAFGMVILQLLTAKPAVALTHVVETAIDNCTLINVLDIEAGDWPVEETYELARLGLRCTEMQRKDRPDLKDQVLPLLLTLKEVADEARNLASKVPPAIPNHFICPILQDVMNDPCVAADGYTYDRQAIEKWIQENDNSPITMLPLPHKNLIPNYNLLSAIVEWNSRKN 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4878826 4885245 + ClCG01G004570.1 Cla01g00450 264039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00450 737 CDD RING-Ubox_WDSUB1_like 671 710 - -
Cla01g00450 737 Gene3D Phosphorylase Kinase; domain 1 363 456 - -
Cla01g00450 737 ProSitePatterns Protein kinases ATP-binding region signature. 390 411 IPR017441 GO:0005524
Cla01g00450 737 SMART serkin_6 384 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00450 737 CDD STK_N 44 188 - -
Cla01g00450 737 Gene3D Transferase(Phosphotransferase) domain 1 457 662 - -
Cla01g00450 737 ProSiteProfiles Protein kinase domain profile. 384 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00450 737 Pfam Protein kinase domain 386 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00450 737 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 199 733 - -
Cla01g00450 737 PANTHER OS02G0152300 PROTEIN 199 733 - -
Cla01g00450 737 Pfam U-box domain 667 736 IPR003613 GO:0004842|GO:0016567
Cla01g00450 737 SUPERFAMILY RING/U-box 661 735 - -
Cla01g00450 737 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 42 191 - -
Cla01g00450 737 Coils Coil 257 277 - -
Cla01g00450 737 Coils Coil 285 333 - -
Cla01g00450 737 PANTHER OS02G0152300 PROTEIN 42 191 - -
Cla01g00450 737 ProSitePatterns Serine/Threonine protein kinases active-site signature. 502 514 IPR008271 GO:0004672|GO:0006468
Cla01g00450 737 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 666 737 IPR013083 -
Cla01g00450 737 SUPERFAMILY Protein kinase-like (PK-like) 364 640 IPR011009 -
Cla01g00450 737 ProSiteProfiles U-box domain profile. 666 737 IPR003613 GO:0004842|GO:0016567
Cla01g00450 737 SMART Ubox_2 670 732 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00450 Cla-Chr1:4878826 Cla11g00152 Cla-Chr11:1806239 2.18E-09 dispersed
Cla01g00450 Cla-Chr1:4878826 Cla01g00454 Cla-Chr1:4918871 1.15E-116 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80235 PF00069 Pkinase 2.20E-40 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00450 - - csv:101217665 991.49