Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00454 ATGTGCATACTTATAAATGACTTGCTTTCCCCATTGCTCAGGAGCTTTGATGCTAAGAGTTGCATAATTATGGAGGGGATGGAAGATGAATCCAATAGAAATCTTATGTTGCTGCCTTCCCCTTCTCCAGTTGTAGCCGTTGCTATCAGTGGGAAGAAAAACAGTAAATATATAATTAGGTGGTCATTGGATAAGTTTCTACCTGAGGGCATCACTGATTTCAAGTTGCTACACGTCATCCCAAGGATTACTAGTGTTCCAACGCCAAATTGCATATTCAAGCTATATGCCAATGTTGATGCAGTGGGAAACTCAATTCCAATTTCACAAGTTCGTGATGATGTCGCTGCGGCTTACAGGAAAGAAATCGGGTGGCAGACAAGTGAAAAACTTCTTCCATATAAGAAGATGTTTGCTGAGAGAAAGGTTCATCTTGATATTGCAACTCTTGAAGCAGATGATGTGGCAAATACAATAATAGAAGAGGTTACAAAATGTTCAATCAACAAGCTTGTTATAGGAGTTTCTTCACAGGGATTATTCTCAAGGAAACTAAACGGTCTATCCTCAAGAATATCAGCCCTTGCACCTAAATATTGTACAGTCTATGCTATTTCAAAAGGAAAACTAGCCTCAATACAGCCGCCTAATACGGGGACAAATGTGAGCATTAAAGATGATGCGAGTGAAGCAAGTTCTGCGAATAGCTACTCAAGCCATACATCTGGCTCCCTTACAGATAGCAGTTCAAGCTTAGTTACCTCCTACTCTCATTTCCCTTCTCCTTCCTCTTCCTTACCATTACAACGATTTCAAGCTCTTTCAACCATTAATCAATCTCTTCTTACGACAAAACCGAGCCTCATTAAAGTCAACCGTTCTAGATGTCAATCCGTTGATATTGAGAATCAGGTGGATGGAGTTCATTCTTCTTCCTATGCTTCCGATTGTGCACAAACATTGAGTCGAACCTCTAGTTGTAAAAGCTTGCCAGCAGATTACCAGTCCTGGGTTACTGATGAAGCTTCATCCACAGGCGCGTTCAATGATTATCCTTCATGTGAAAGTCAGGCGGATGTGAGCTTTGAGCTTGAAAAGTTGAGAATCGAACTAAGACATGCGAGAGGAATGTATGCAATTGCTCAACGTGAGACAATTGATGCCTCTCGAAAGCTGAACCATCTAAGTAAGCAACGAACAGAGGAAGCTAGGAAGCTTGAAGAGATCAACAATAAAGAGGTAGCCACCAAAAAACTTGCAAGGGAAGAGAGAGAGAAACGTGAAGCTTTGAGAAGAGAAGCTAAGTATTTAAAAGAAAGCGCTGAAAGAGAGGGCATCTATAGGAAGGAAGCAGAGACAAAAGCTCTTCAGGATGCCAAAGAGAAGGGAAAGCATGAAAGTGTTCTTCAAGGACCTCTGCAGCAATACCAATATTTTCAGTGGGAAGATATTGTTTCTGCCACATCATCTTTCTCTGAGGATCTTAAGATTGGAATGGGAGCACATGGAACAGTTTATAAGTGCAGCTTGCATCATACAACTGTAGCAGTGAAGGTTCTTCACTCTAGAGATGATCACAAAAAGATGCAATTTCTTCAGGAGCTTGAAATCTTGAGCAAAATCCATCACCCCCATCTACTATTACTCCTCGGTGCGTGTCCGGATAAGAATTGTCTGGTTTATGAGTACATGGAAAATGGTAGCTTGGAGGATAGGTTATACCACAGAGGCAATACACCTGCAATCCCATGGTATGAGAGGTTTCGAATTGCTTGGGAAATAGCTTCTGCTCTTGTCTTTCTTCACAGCTCAAAACCAAAACCCATAATCCACCGTGACCTTAAACCAGCAAACATCTTACTTGACCAAAACCTGGTGAGCAAAATCGGCGACGTCGGTCTTTCTACAGTGTTTAATTCAGACCCTTTAATGTCTACTGCATTCATGAATAGTGGACCAGTTGGGACTCTCTGCTACATAGATCCCGAGTATCAACGAACTGGGTTACTCTCGCCTAAGTCTGATGTATATGCCTTTGGAATGGTGATCTTGCAGTTACTAACTGCAAAACCAGCAGTAGCACTAACCCATGTGGTGGAAACAGCCATTGATAACTGCACTTTAATTAATGTTCTGGATATAGAGGCTGGGGATTGGCCCGTCGAAGAGACGTATGAATTGGCAAGATTAGGACTTCGCTGCACCGAGATGCAACGTAAAGATAGGCCTGACTTAAAGGATCAAGTGCTTCCCTTGTTGCTGACACTGAAAGAAGTTGCTGACGAGGCACGCAATTTGGCCTCCAAAGTTCCACCTGCAATTCCTAATCATTTCATCTGTCCAATTCTTCAGGATGTGATGAATGACCCTTGTGTGGCGGCGGATGGATACACATACGATCGTCAGGCAATAGAGAAGTGGATTCAGGAGAACGATAATTCACCCATAACGATGTTGCCGTTGCCACATAAGAATTTAATACCAAATTACAATCTACTCTCTGCAATTGTTGAGTGGAACTCCAGAAAAAATTAA 2535 42.05 MCILINDLLSPLLRSFDAKSCIIMEGMEDESNRNLMLLPSPSPVVAVAISGKKNSKYIIRWSLDKFLPEGITDFKLLHVIPRITSVPTPNCIFKLYANVDAVGNSIPISQVRDDVAAAYRKEIGWQTSEKLLPYKKMFAERKVHLDIATLEADDVANTIIEEVTKCSINKLVIGVSSQGLFSRKLNGLSSRISALAPKYCTVYAISKGKLASIQPPNTGTNVSIKDDASEASSANSYSSHTSGSLTDSSSSLVTSYSHFPSPSSSLPLQRFQALSTINQSLLTTKPSLIKVNRSRCQSVDIENQVDGVHSSSYASDCAQTLSRTSSCKSLPADYQSWVTDEASSTGAFNDYPSCESQADVSFELEKLRIELRHARGMYAIAQRETIDASRKLNHLSKQRTEEARKLEEINNKEVATKKLAREEREKREALRREAKYLKESAEREGIYRKEAETKALQDAKEKGKHESVLQGPLQQYQYFQWEDIVSATSSFSEDLKIGMGAHGTVYKCSLHHTTVAVKVLHSRDDHKKMQFLQELEILSKIHHPHLLLLLGACPDKNCLVYEYMENGSLEDRLYHRGNTPAIPWYERFRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDQNLVSKIGDVGLSTVFNSDPLMSTAFMNSGPVGTLCYIDPEYQRTGLLSPKSDVYAFGMVILQLLTAKPAVALTHVVETAIDNCTLINVLDIEAGDWPVEETYELARLGLRCTEMQRKDRPDLKDQVLPLLLTLKEVADEARNLASKVPPAIPNHFICPILQDVMNDPCVAADGYTYDRQAIEKWIQENDNSPITMLPLPHKNLIPNYNLLSAIVEWNSRKN 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4918871 4926392 + ClCG01G004610.2 Cla01g00454 264043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00454 844 ProSitePatterns Protein kinases ATP-binding region signature. 497 518 IPR017441 GO:0005524
Cla01g00454 844 PANTHER OS02G0152300 PROTEIN 42 840 - -
Cla01g00454 844 SUPERFAMILY Protein kinase-like (PK-like) 471 747 IPR011009 -
Cla01g00454 844 Coils Coil 392 440 - -
Cla01g00454 844 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 42 840 - -
Cla01g00454 844 ProSitePatterns Serine/Threonine protein kinases active-site signature. 609 621 IPR008271 GO:0004672|GO:0006468
Cla01g00454 844 Coils Coil 364 384 - -
Cla01g00454 844 SMART Ubox_2 777 839 IPR003613 GO:0004842|GO:0016567
Cla01g00454 844 ProSiteProfiles U-box domain profile. 773 844 IPR003613 GO:0004842|GO:0016567
Cla01g00454 844 ProSiteProfiles Protein kinase domain profile. 491 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00454 844 Gene3D HUPs 34 206 IPR014729 -
Cla01g00454 844 CDD STK_N 44 208 - -
Cla01g00454 844 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 773 844 IPR013083 -
Cla01g00454 844 SMART serkin_6 491 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00454 844 CDD RING-Ubox_WDSUB1_like 778 817 - -
Cla01g00454 844 Pfam U-box domain 774 843 IPR003613 GO:0004842|GO:0016567
Cla01g00454 844 Gene3D Phosphorylase Kinase; domain 1 470 563 - -
Cla01g00454 844 Pfam Protein kinase domain 493 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00454 844 SUPERFAMILY RING/U-box 768 842 - -
Cla01g00454 844 Gene3D Transferase(Phosphotransferase) domain 1 564 769 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00454 - - - csv:101217665 1369.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00454 Cla-Chr1:4918871 Cla11g00152 Cla-Chr11:1806239 5.12E-144 dispersed
Cla01g00450 Cla-Chr1:4878826 Cla01g00454 Cla-Chr1:4918871 1.15E-116 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g01473 . 1 1041 U-box Gene Family AT5G15400 76.0 0.0e+00 1577.0
Cla02g01224 . 213 810 U-box Gene Family AT2G23140 65.2 9.6e-120 427.9
Cla08g01687 . 1 818 U-box Gene Family AT1G24330 56.7 1.8e-237 819.3
Cla11g01354 . 209 1001 U-box Gene Family AT1G24330 54.3 1.3e-216 750.0
Cla08g01687 . 1 817 U-box Gene Family AT1G67530 56.6 2.2e-235 812.4
Cla11g01354 . 209 1002 U-box Gene Family AT1G67530 53.2 3.4e-212 735.3
Cla01g02188 . 1 362 U-box Gene Family AT4G21350 62.1 2.5e-120 429.1
Cla07g00206 . 135 460 U-box Gene Family AT3G07360 55.3 4.0e-82 302.0
Cla07g00605 CCT 312 499 U-box Gene Family AT1G71020 70.9 8.6e-73 271.6
Cla01g00596 CCT 1056 1255 U-box Gene Family AT1G71020 55.9 3.1e-54 209.9
Cla03g00152 CCT 263 432 U-box Gene Family AT1G71020 57.8 9.6e-48 188.3
Cla05g02163 . 279 444 U-box Gene Family AT1G71020 57.4 6.2e-47 185.7
Cla02g01975 CCT 255 425 U-box Gene Family AT1G71020 57.6 1.1e-46 184.9
Cla07g00605 CCT 63 703 U-box Gene Family AT1G23030 56.6 6.6e-110 395.2
Cla01g00596 CCT 881 1445 U-box Gene Family AT1G23030 53.3 2.1e-79 293.9
Cla02g01975 CCT 93 635 U-box Gene Family AT2G28830 50.8 1.3e-99 360.9
Cla03g00152 CCT 93 637 U-box Gene Family AT2G28830 58.3 1.6e-97 354.0
Cla03g00152 CCT 1 671 U-box Gene Family AT3G46510 66.6 5.0e-164 575.1
Cla02g01975 CCT 3 638 U-box Gene Family AT3G46510 66.3 5.9e-157 551.6
Cla05g02163 . 16 653 U-box Gene Family AT3G46510 56.1 1.0e-116 417.9
Cla05g02163 . 12 655 U-box Gene Family AT3G54850 65.6 3.6e-159 558.9
Cla02g01975 CCT 13 628 U-box Gene Family AT3G54850 57.3 2.4e-115 413.3
Cla03g00152 CCT 8 632 U-box Gene Family AT3G54850 55.0 1.7e-100 364.0
Cla02g00969 . 92 684 U-box Gene Family AT5G42340 60.0 2.1e-122 436.8
Cla04g00653 . 9 669 U-box Gene Family AT5G01830 57.4 1.4e-198 689.9
Cla03g00696 . 1 711 U-box Gene Family AT1G29340 68.1 3.4e-246 848.2
Cla05g01204 . 27 442 U-box Gene Family AT5G37490 51.7 1.2e-110 397.1
Cla04g00523 . 4 422 U-box Gene Family AT3G52450 52.4 3.2e-119 425.6
Cla10g01740 . 1 403 U-box Gene Family AT3G52450 50.7 2.4e-114 409.5
Cla10g01740 . 1 403 U-box Gene Family AT2G35930 55.6 4.7e-120 428.3
Cla04g00523 . 7 422 U-box Gene Family AT2G35930 51.4 3.7e-117 418.7
Cla05g01082 . 9 426 U-box Gene Family AT3G19380 64.1 3.6e-147 518.5
Cla05g01082 . 1 426 U-box Gene Family AT1G49780 64.3 1.1e-151 533.5
Cla01g01528 CCT 1 407 U-box Gene Family AT5G64660 54.2 2.6e-121 432.6
Cla01g01528 CCT 1 407 U-box Gene Family AT5G09800 51.3 6.6e-106 381.3
Cla05g02664 . 1 454 U-box Gene Family AT3G49810 62.6 2.1e-153 539.3
Cla08g01635 . 1 454 U-box Gene Family AT3G49810 61.9 9.6e-151 530.4
Cla08g01635 . 1 454 U-box Gene Family AT5G65920 62.8 4.7e-150 528.1
Cla05g02664 . 1 454 U-box Gene Family AT5G65920 61.3 2.9e-147 518.8
Cla05g00164 CCT 1 918 U-box Gene Family AT2G45910 50.3 8.7e-230 793.9
Cla11g00152 . 4 747 U-box Gene Family AT2G19410 50.6 6.7e-208 721.1
Cla01g00454 . 48 843 U-box Gene Family AT4G25160 50.7 1.0e-217 753.8
Cla06g01636 . 1 478 U-box Gene Family AT5G65200 50.1 2.9e-88 323.2
Cla09g01823 . 1 551 U-box Gene Family AT5G40140 53.9 1.6e-94 344.0
Cla06g01636 . 27 477 U-box Gene Family AT5G40140 51.5 2.1e-59 227.3
Cla01g01396 . 29 498 U-box Gene Family AT5G40140 52.1 2.9e-56 216.9
Cla08g00936 . 77 885 U-box Gene Family AT1G76390 61.2 4.1e-269 924.5
Cla08g00936 . 86 885 U-box Gene Family AT1G20780 61.7 4.8e-278 954.1
Cla08g01687 . 1 820 U-box Gene Family AT1G27910 59.6 1.4e-261 899.4
Cla11g01354 . 209 1013 U-box Gene Family AT1G27910 57.8 1.1e-247 853.2
Cla01g01716 . 394 985 U-box Gene Family AT5G67530 74.0 3.4e-260 894.4
Cla05g00226 . 77 207 U-box Gene Family AT5G67530 55.7 5.9e-39 159.5
Cla10g01783 . 12 150 U-box Gene Family AT5G67530 50.4 1.1e-37 155.2
Cla05g00413 . 48 530 U-box Gene Family AT1G04510 70.6 3.1e-193 671.8
Cla05g00413 . 48 504 U-box Gene Family AT2G33340 72.5 8.4e-193 670.2
Cla07g00205 . 10 278 U-box Gene Family AT3G07370 66.9 3.0e-102 368.6
Cla10g01473 . 1 1041 U-box Gene Family AT5G15400 76.0 0.0e+00 1577.0
Cla02g01224 . 213 810 U-box Gene Family AT2G23140 65.2 9.6e-120 427.9
Cla08g01687 . 1 818 U-box Gene Family AT1G24330 56.7 1.8e-237 819.3
Cla11g01354 . 209 1001 U-box Gene Family AT1G24330 54.3 1.3e-216 750.0
Cla08g01687 . 1 817 U-box Gene Family AT1G67530 56.6 2.2e-235 812.4
Cla11g01354 . 209 1002 U-box Gene Family AT1G67530 53.2 3.4e-212 735.3
Cla01g02188 . 1 362 U-box Gene Family AT4G21350 62.1 2.5e-120 429.1
Cla07g00206 . 135 460 U-box Gene Family AT3G07360 55.3 4.0e-82 302.0
Cla07g00605 CCT 312 499 U-box Gene Family AT1G71020 70.9 8.6e-73 271.6
Cla01g00596 CCT 1056 1255 U-box Gene Family AT1G71020 55.9 3.1e-54 209.9
Cla03g00152 CCT 263 432 U-box Gene Family AT1G71020 57.8 9.6e-48 188.3
Cla05g02163 . 279 444 U-box Gene Family AT1G71020 57.4 6.2e-47 185.7
Cla02g01975 CCT 255 425 U-box Gene Family AT1G71020 57.6 1.1e-46 184.9
Cla07g00605 CCT 63 703 U-box Gene Family AT1G23030 56.6 6.6e-110 395.2
Cla01g00596 CCT 881 1445 U-box Gene Family AT1G23030 53.3 2.1e-79 293.9
Cla02g01975 CCT 93 635 U-box Gene Family AT2G28830 50.8 1.3e-99 360.9
Cla03g00152 CCT 93 637 U-box Gene Family AT2G28830 58.3 1.6e-97 354.0
Cla03g00152 CCT 1 671 U-box Gene Family AT3G46510 66.6 5.0e-164 575.1
Cla02g01975 CCT 3 638 U-box Gene Family AT3G46510 66.3 5.9e-157 551.6
Cla05g02163 . 16 653 U-box Gene Family AT3G46510 56.1 1.0e-116 417.9
Cla05g02163 . 12 655 U-box Gene Family AT3G54850 65.6 3.6e-159 558.9
Cla02g01975 CCT 13 628 U-box Gene Family AT3G54850 57.3 2.4e-115 413.3
Cla03g00152 CCT 8 632 U-box Gene Family AT3G54850 55.0 1.7e-100 364.0
Cla02g00969 . 92 684 U-box Gene Family AT5G42340 60.0 2.1e-122 436.8
Cla04g00653 . 9 669 U-box Gene Family AT5G01830 57.4 1.4e-198 689.9
Cla03g00696 . 1 711 U-box Gene Family AT1G29340 68.1 3.4e-246 848.2
Cla05g01204 . 27 442 U-box Gene Family AT5G37490 51.7 1.2e-110 397.1
Cla04g00523 . 4 422 U-box Gene Family AT3G52450 52.4 3.2e-119 425.6
Cla10g01740 . 1 403 U-box Gene Family AT3G52450 50.7 2.4e-114 409.5
Cla10g01740 . 1 403 U-box Gene Family AT2G35930 55.6 4.7e-120 428.3
Cla04g00523 . 7 422 U-box Gene Family AT2G35930 51.4 3.7e-117 418.7
Cla05g01082 . 9 426 U-box Gene Family AT3G19380 64.1 3.6e-147 518.5
Cla05g01082 . 1 426 U-box Gene Family AT1G49780 64.3 1.1e-151 533.5
Cla01g01528 CCT 1 407 U-box Gene Family AT5G64660 54.2 2.6e-121 432.6
Cla01g01528 CCT 1 407 U-box Gene Family AT5G09800 51.3 6.6e-106 381.3
Cla05g02664 . 1 454 U-box Gene Family AT3G49810 62.6 2.1e-153 539.3
Cla08g01635 . 1 454 U-box Gene Family AT3G49810 61.9 9.6e-151 530.4
Cla08g01635 . 1 454 U-box Gene Family AT5G65920 62.8 4.7e-150 528.1
Cla05g02664 . 1 454 U-box Gene Family AT5G65920 61.3 2.9e-147 518.8
Cla05g00164 CCT 1 918 U-box Gene Family AT2G45910 50.3 8.7e-230 793.9
Cla11g00152 . 4 747 U-box Gene Family AT2G19410 50.6 6.7e-208 721.1
Cla01g00454 . 48 843 U-box Gene Family AT4G25160 50.7 1.0e-217 753.8
Cla06g01636 . 1 478 U-box Gene Family AT5G65200 50.1 2.9e-88 323.2
Cla09g01823 . 1 551 U-box Gene Family AT5G40140 53.9 1.6e-94 344.0
Cla06g01636 . 27 477 U-box Gene Family AT5G40140 51.5 2.1e-59 227.3
Cla01g01396 . 29 498 U-box Gene Family AT5G40140 52.1 2.9e-56 216.9
Cla08g00936 . 77 885 U-box Gene Family AT1G76390 61.2 4.1e-269 924.5
Cla08g00936 . 86 885 U-box Gene Family AT1G20780 61.7 4.8e-278 954.1
Cla08g01687 . 1 820 U-box Gene Family AT1G27910 59.6 1.4e-261 899.4
Cla11g01354 . 209 1013 U-box Gene Family AT1G27910 57.8 1.1e-247 853.2
Cla01g01716 . 394 985 U-box Gene Family AT5G67530 74.0 3.4e-260 894.4
Cla05g00226 . 77 207 U-box Gene Family AT5G67530 55.7 5.9e-39 159.5
Cla10g01783 . 12 150 U-box Gene Family AT5G67530 50.4 1.1e-37 155.2
Cla05g00413 . 48 530 U-box Gene Family AT1G04510 70.6 3.1e-193 671.8
Cla05g00413 . 48 504 U-box Gene Family AT2G33340 72.5 8.4e-193 670.2
Cla07g00205 . 10 278 U-box Gene Family AT3G07370 66.9 3.0e-102 368.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007149 1 0 1 0 1 1 2 1 1 1 2 1 2 1 1 1 1 1 2 1 1 1 1 0 0 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80237 PF00069 Pkinase 2.90E-40 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00454 Cla_Chr01 FPKM 11.745131 16.209015 6.279863 8.154453 20.009069 19.093206 21.488413 12.244703 12.252729 12.261667