Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00454 ATGTGCATACTTATAAATGACTTGCTTTCCCCATTGCTCAGGAGCTTTGATGCTAAGAGTTGCATAATTATGGAGGGGATGGAAGATGAATCCAATAGAAATCTTATGTTGCTGCCTTCCCCTTCTCCAGTTGTAGCCGTTGCTATCAGTGGGAAGAAAAACAGTAAATATATAATTAGGTGGTCATTGGATAAGTTTCTACCTGAGGGCATCACTGATTTCAAGTTGCTACACGTCATCCCAAGGATTACTAGTGTTCCAACGCCAAATTGCATATTCAAGCTATATGCCAATGTTGATGCAGTGGGAAACTCAATTCCAATTTCACAAGTTCGTGATGATGTCGCTGCGGCTTACAGGAAAGAAATCGGGTGGCAGACAAGTGAAAAACTTCTTCCATATAAGAAGATGTTTGCTGAGAGAAAGGTTCATCTTGATATTGCAACTCTTGAAGCAGATGATGTGGCAAATACAATAATAGAAGAGGTTACAAAATGTTCAATCAACAAGCTTGTTATAGGAGTTTCTTCACAGGGATTATTCTCAAGGAAACTAAACGGTCTATCCTCAAGAATATCAGCCCTTGCACCTAAATATTGTACAGTCTATGCTATTTCAAAAGGAAAACTAGCCTCAATACAGCCGCCTAATACGGGGACAAATGTGAGCATTAAAGATGATGCGAGTGAAGCAAGTTCTGCGAATAGCTACTCAAGCCATACATCTGGCTCCCTTACAGATAGCAGTTCAAGCTTAGTTACCTCCTACTCTCATTTCCCTTCTCCTTCCTCTTCCTTACCATTACAACGATTTCAAGCTCTTTCAACCATTAATCAATCTCTTCTTACGACAAAACCGAGCCTCATTAAAGTCAACCGTTCTAGATGTCAATCCGTTGATATTGAGAATCAGGTGGATGGAGTTCATTCTTCTTCCTATGCTTCCGATTGTGCACAAACATTGAGTCGAACCTCTAGTTGTAAAAGCTTGCCAGCAGATTACCAGTCCTGGGTTACTGATGAAGCTTCATCCACAGGCGCGTTCAATGATTATCCTTCATGTGAAAGTCAGGCGGATGTGAGCTTTGAGCTTGAAAAGTTGAGAATCGAACTAAGACATGCGAGAGGAATGTATGCAATTGCTCAACGTGAGACAATTGATGCCTCTCGAAAGCTGAACCATCTAAGTAAGCAACGAACAGAGGAAGCTAGGAAGCTTGAAGAGATCAACAATAAAGAGGTAGCCACCAAAAAACTTGCAAGGGAAGAGAGAGAGAAACGTGAAGCTTTGAGAAGAGAAGCTAAGTATTTAAAAGAAAGCGCTGAAAGAGAGGGCATCTATAGGAAGGAAGCAGAGACAAAAGCTCTTCAGGATGCCAAAGAGAAGGGAAAGCATGAAAGTGTTCTTCAAGGACCTCTGCAGCAATACCAATATTTTCAGTGGGAAGATATTGTTTCTGCCACATCATCTTTCTCTGAGGATCTTAAGATTGGAATGGGAGCACATGGAACAGTTTATAAGTGCAGCTTGCATCATACAACTGTAGCAGTGAAGGTTCTTCACTCTAGAGATGATCACAAAAAGATGCAATTTCTTCAGGAGCTTGAAATCTTGAGCAAAATCCATCACCCCCATCTACTATTACTCCTCGGTGCGTGTCCGGATAAGAATTGTCTGGTTTATGAGTACATGGAAAATGGTAGCTTGGAGGATAGGTTATACCACAGAGGCAATACACCTGCAATCCCATGGTATGAGAGGTTTCGAATTGCTTGGGAAATAGCTTCTGCTCTTGTCTTTCTTCACAGCTCAAAACCAAAACCCATAATCCACCGTGACCTTAAACCAGCAAACATCTTACTTGACCAAAACCTGGTGAGCAAAATCGGCGACGTCGGTCTTTCTACAGTGTTTAATTCAGACCCTTTAATGTCTACTGCATTCATGAATAGTGGACCAGTTGGGACTCTCTGCTACATAGATCCCGAGTATCAACGAACTGGGTTACTCTCGCCTAAGTCTGATGTATATGCCTTTGGAATGGTGATCTTGCAGTTACTAACTGCAAAACCAGCAGTAGCACTAACCCATGTGGTGGAAACAGCCATTGATAACTGCACTTTAATTAATGTTCTGGATATAGAGGCTGGGGATTGGCCCGTCGAAGAGACGTATGAATTGGCAAGATTAGGACTTCGCTGCACCGAGATGCAACGTAAAGATAGGCCTGACTTAAAGGATCAAGTGCTTCCCTTGTTGCTGACACTGAAAGAAGTTGCTGACGAGGCACGCAATTTGGCCTCCAAAGTTCCACCTGCAATTCCTAATCATTTCATCTGTCCAATTCTTCAGGATGTGATGAATGACCCTTGTGTGGCGGCGGATGGATACACATACGATCGTCAGGCAATAGAGAAGTGGATTCAGGAGAACGATAATTCACCCATAACGATGTTGCCGTTGCCACATAAGAATTTAATACCAAATTACAATCTACTCTCTGCAATTGTTGAGTGGAACTCCAGAAAAAATTAA 2535 42.05 MCILINDLLSPLLRSFDAKSCIIMEGMEDESNRNLMLLPSPSPVVAVAISGKKNSKYIIRWSLDKFLPEGITDFKLLHVIPRITSVPTPNCIFKLYANVDAVGNSIPISQVRDDVAAAYRKEIGWQTSEKLLPYKKMFAERKVHLDIATLEADDVANTIIEEVTKCSINKLVIGVSSQGLFSRKLNGLSSRISALAPKYCTVYAISKGKLASIQPPNTGTNVSIKDDASEASSANSYSSHTSGSLTDSSSSLVTSYSHFPSPSSSLPLQRFQALSTINQSLLTTKPSLIKVNRSRCQSVDIENQVDGVHSSSYASDCAQTLSRTSSCKSLPADYQSWVTDEASSTGAFNDYPSCESQADVSFELEKLRIELRHARGMYAIAQRETIDASRKLNHLSKQRTEEARKLEEINNKEVATKKLAREEREKREALRREAKYLKESAEREGIYRKEAETKALQDAKEKGKHESVLQGPLQQYQYFQWEDIVSATSSFSEDLKIGMGAHGTVYKCSLHHTTVAVKVLHSRDDHKKMQFLQELEILSKIHHPHLLLLLGACPDKNCLVYEYMENGSLEDRLYHRGNTPAIPWYERFRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDQNLVSKIGDVGLSTVFNSDPLMSTAFMNSGPVGTLCYIDPEYQRTGLLSPKSDVYAFGMVILQLLTAKPAVALTHVVETAIDNCTLINVLDIEAGDWPVEETYELARLGLRCTEMQRKDRPDLKDQVLPLLLTLKEVADEARNLASKVPPAIPNHFICPILQDVMNDPCVAADGYTYDRQAIEKWIQENDNSPITMLPLPHKNLIPNYNLLSAIVEWNSRKN 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4918871 4926392 + ClCG01G004610.2 Cla01g00454 264043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00454 844 ProSitePatterns Protein kinases ATP-binding region signature. 497 518 IPR017441 GO:0005524
Cla01g00454 844 PANTHER OS02G0152300 PROTEIN 42 840 - -
Cla01g00454 844 SUPERFAMILY Protein kinase-like (PK-like) 471 747 IPR011009 -
Cla01g00454 844 Coils Coil 392 440 - -
Cla01g00454 844 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 42 840 - -
Cla01g00454 844 ProSitePatterns Serine/Threonine protein kinases active-site signature. 609 621 IPR008271 GO:0004672|GO:0006468
Cla01g00454 844 Coils Coil 364 384 - -
Cla01g00454 844 SMART Ubox_2 777 839 IPR003613 GO:0004842|GO:0016567
Cla01g00454 844 ProSiteProfiles U-box domain profile. 773 844 IPR003613 GO:0004842|GO:0016567
Cla01g00454 844 ProSiteProfiles Protein kinase domain profile. 491 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00454 844 Gene3D HUPs 34 206 IPR014729 -
Cla01g00454 844 CDD STK_N 44 208 - -
Cla01g00454 844 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 773 844 IPR013083 -
Cla01g00454 844 SMART serkin_6 491 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00454 844 CDD RING-Ubox_WDSUB1_like 778 817 - -
Cla01g00454 844 Pfam U-box domain 774 843 IPR003613 GO:0004842|GO:0016567
Cla01g00454 844 Gene3D Phosphorylase Kinase; domain 1 470 563 - -
Cla01g00454 844 Pfam Protein kinase domain 493 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00454 844 SUPERFAMILY RING/U-box 768 842 - -
Cla01g00454 844 Gene3D Transferase(Phosphotransferase) domain 1 564 769 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00454 Cla-Chr1:4918871 Cla11g00152 Cla-Chr11:1806239 5.12E-144 dispersed
Cla01g00450 Cla-Chr1:4878826 Cla01g00454 Cla-Chr1:4918871 1.15E-116 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80237 PF00069 Pkinase 2.90E-40 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00454 - - csv:101217665 1369.76