Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla01g00458 | ATGCTCAAACTAATTCTTCTCGTTGCTTCGGCCACCATTTTCCTCCTCCTCCTAATTTCCATCTTCATTTTTCGCCTTAAACTCTCTAAAAATCACCACATCCACAACCCTTCCCCCAATAAGAACAAGAAAACAGAGCACACGCCGCCGGAGCTCACCACTTTTGAGGGCGGCGAAGATTTGACGATCGACGAAATTCTAGAAGCTCCTGGGGAAGTGATCGGAAAATCCCATTATGGAACACTGTATAAGGCTACGTTACAGAGCACCCAAACCACCCGGCTACTCAGATTCCTCCGCCCGGCCGCTGGCGGAGGAGACCATAATGACGACGTCGTTCGGTTTCTGGGTTCGATTCGGCACCGGAATTTGGTCCCGTTGCTGGGATTCTACGCCGGCGGGAGGGGCGAGAAGCTTCTGATTCATCCGTTCTACGAGCAGGGGAATTTGGCGGAGTTCATTAGAGTAGGTGAAACAGAATCAAAAAATTGGGAGGTCATTTACAAAATCTCCATCGGAATCGCAAAAGCCCTGCATCATCTTCACAACGGATTGCAAAAACCAATCCCTCACGGAAATCTCAACTCCAACAACATTCTTCTCGATCAAAATCTCCATCCGCACGTCTCCGATTTCGGCCTCCATCTCCTCCTCAACGCCGCCGCAACTCGAGAAATGCTCCACGTTTCAGCCGCCGCTGGCTACAAAGCGCCGGAACTTATCAAAATGACCGACGCTGATGAACGCACCGACGTCTACAGCTACGGCAAGATCTTACTCGAGTTGCTCTCTGCCAAAGAGCCCACGATTCGAAATCCGGTTGCTACCGACGATTCCGGCGTTTCTGAAAATCGGATTCTCCGATGCATTCTTCAGATCGGCGAGGTTTGTTGTCGTTCTTCGCCGAATCTTCGGCCGGATTTCAAACAAGTGATTGCTAAGATCGAAGAAATCGGAAGGATTGAGATGGATTAA | 975 | 49.95 | MLKLILLVASATIFLLLLISIFIFRLKLSKNHHIHNPSPNKNKKTEHTPPELTTFEGGEDLTIDEILEAPGEVIGKSHYGTLYKATLQSTQTTRLLRFLRPAAGGGDHNDDVVRFLGSIRHRNLVPLLGFYAGGRGEKLLIHPFYEQGNLAEFIRVGETESKNWEVIYKISIGIAKALHHLHNGLQKPIPHGNLNSNNILLDQNLHPHVSDFGLHLLLNAAATREMLHVSAAAGYKAPELIKMTDADERTDVYSYGKILLELLSAKEPTIRNPVATDDSGVSENRILRCILQIGEVCCRSSPNLRPDFKQVIAKIEEIGRIEMD | 324 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 4946416 | 4950704 | - | ClCG01G004650.2 | Cla01g00458 | 264047 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla01g00458 | 324 | ProSiteProfiles | Protein kinase domain profile. | 68 | 318 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cla01g00458 | 324 | Gene3D | Transferase(Phosphotransferase) domain 1 | 62 | 324 | - | - | |
| Cla01g00458 | 324 | Pfam | Protein tyrosine and serine/threonine kinase | 72 | 314 | IPR001245 | GO:0004672|GO:0006468 | |
| Cla01g00458 | 324 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED | 277 | 319 | - | - | |
| Cla01g00458 | 324 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED | 3 | 273 | - | - | |
| Cla01g00458 | 324 | SUPERFAMILY | Protein kinase-like (PK-like) | 71 | 316 | IPR011009 | - | |
| Cla01g00458 | 324 | PANTHER | PROTEIN KINASE SUPERFAMILY PROTEIN | 277 | 319 | - | - | |
| Cla01g00458 | 324 | PANTHER | PROTEIN KINASE SUPERFAMILY PROTEIN | 3 | 273 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g00458 | Cla-Chr1:4946416 | Cla07g01615 | Cla-Chr7:33450889 | 2.23E-107 | dispersed | |
| Cla01g00453 | Cla-Chr1:4905139 | Cla01g00458 | Cla-Chr1:4946416 | 6.61E-69 | proximal |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 80238 | PF07714 | PK_Tyr_Ser-Thr | 1.80E-26 | CL0016 | Cla | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla01g00458 | - | - | csv:101217438 | 490.345 |