Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00472 ATGGGTTTCGACAAAGCACTGGCGCCCTATATTCTCCTCGCCGCCATGATGATCCTCGTGGGGCCAACCACGGCGCAGTTGAGCCCGACGTTCTACGACACCACATGCCCTAACTTATCCTCCATTGTAGAAGATGTAGTTAGACAAGCTCTCCAAACCGATGCCCGAGCAGGCGCAAAACTCATTCGCTTTCATTTTCACGACTGTTTTGTCAATGGTTGTGATGGATCTGTCCTATTGGAAGATTCAGTTGAAGACAACATAGATAGTGAGCAAAACGCTCCGGGAAATGAAGGAATACAAGGCCAAAATATTGTTGCCGACATCAAGACTGCAGTTGAAAATGTTTGTCCAAACCTAGTCTCCTGTGCTGACATCTTAGCCATTGCATCTAATTCAGCTGTCGTCTTGGCCGGAGGTAGGGGTTGGGAGGTTCAACTAGGAAGAAGAGATAGTCTAATAGCAAATAGATCTGGAGCTGAAAGTAATCTTCCAAGTCCTTTTGAACCACTTGCAAATCTTACCGTCAAGTTTGCAAATGTTGGTCTTGATTCTACTGACCTTGTCGTTTTATCCGGAGCGCACACGTTCGGTCGTTCAAGATGCCAATTCTTCCAACGGCGATTGAACGACTTCAACGGAACAGGAATGCCTGATTCGAGTCTAGACCCAATATACAGAGACGTTCTTTTGGAGGCATGTCCTGAAGGCGGAGACAACAATCGGGTAAACTTGGATCCGACAACTCCAGACGCATTCGACAACAATTATTTCACCAATCTCCAAGGAAACCGTGGGCTTCTTACCAGCGACCAAGTGCTGTTCTCCCCTGCCGGCGCCGCCACCGCCGGCGATGTGGACCGGTTCGCCGCCAGCCAAGATGTGTTCTTTGATGCCTTTGGAGCCTCCATGATTAAGATGGGAAATATTAGGCCTTTGACTGCAAATGATGGGGAGATTCGTTTGACTTGTTCTAGGATTAATCCTTTGCCTACTCTTGCTGATATGTAA 1011 47.68 MGFDKALAPYILLAAMMILVGPTTAQLSPTFYDTTCPNLSSIVEDVVRQALQTDARAGAKLIRFHFHDCFVNGCDGSVLLEDSVEDNIDSEQNAPGNEGIQGQNIVADIKTAVENVCPNLVSCADILAIASNSAVVLAGGRGWEVQLGRRDSLIANRSGAESNLPSPFEPLANLTVKFANVGLDSTDLVVLSGAHTFGRSRCQFFQRRLNDFNGTGMPDSSLDPIYRDVLLEACPEGGDNNRVNLDPTTPDAFDNNYFTNLQGNRGLLTSDQVLFSPAGAATAGDVDRFAASQDVFFDAFGASMIKMGNIRPLTANDGEIRLTCSRINPLPTLADM 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5069003 5072451 + ClCG01G004800.1 Cla01g00472 264061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00472 336 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Cla01g00472 336 Pfam Peroxidase 43 291 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla01g00472 336 PANTHER PEROXIDASE 72-RELATED 18 328 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g00472 336 Gene3D - 31 328 - -
Cla01g00472 336 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla01g00472 336 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla01g00472 336 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla01g00472 336 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla01g00472 336 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla01g00472 336 PANTHER PEROXIDASE 58 18 328 - -
Cla01g00472 336 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g00472 336 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g00472 336 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g00472 336 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g00472 336 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g00472 336 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g00472 336 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g00472 336 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g00472 336 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla01g00472 336 SUPERFAMILY Heme-dependent peroxidases 26 329 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cla01g00472 336 CDD secretory_peroxidase 26 327 IPR033905 GO:0004601|GO:0042744
Cla01g00472 336 ProSiteProfiles Plant heme peroxidase family profile. 26 328 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla01g00472 336 Gene3D Peroxidase, domain 2 165 307 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00472 Cla-Chr1:5069003 Cla02g02300 Cla-Chr2:38103227 2.78E-144 dispersed
Cla01g00472 Cla-Chr1:5069003 Cla01g01943 Cla-Chr1:34110056 4.31E-95 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00472 K00430 - csv:101215530 585.104