Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00487 ATGGTCTTCTGCAAAATGGCCCCTACTTCCCTCGCTTCCCGCTTCCGAAAATCCGTCACCTCGACCGCACTCCGATCGTACGTCGCCGAGTTCATCTCCACCTTCTTCTACGTCTTCTCTGTCGTCGGAGCATCCATGTCCTCCCGGAAGTTTTTGCCGGGTGTTGTTGCTACGACAGACCCGTCGAGTCTTCTGATGGCCGCCATCGCCAATGCCTTCGCTTTGGCCTCGGCTGTTTACATTGCCGCCAACATCTCCGGCGGACATCTCAACCCGGCTGTGACGTTCGGAATGGCCGTCGCCGGCCATGTTAGTGTTCCCACTGCTCTCTTTTACTGGTTTGCTCAAATGCTTGCCTCTGTCATGGCCTGTATTGTTCTTAGAGCCACCCTTGTTGGACAGCGCGTTACAAGCTATGCCATCACTGAAGAGATGACGGGCTTCGGAGCGTCGGTAGTGGAAGGTGTATTGACATTTGCCCTAGTATACACCGTTTTCGCTGCCAGCGACTCAAGAAGAGGTCCGTGCAATGCGATCGGCGCTGTGATGATTGGGCTGATGGCTGGAGCCAATGTGCTGGCTGCCGGGCCATTTTCCGGTGGATCGGTGAACCCGGCATGCGCGTTTGGGTCAGCAATTGTGGCTGGGAGTTTCAAGAACCAGGCAGTGTACTGGGTTGGGCCATTGATTGGGGCGGCTTTGGCTGGAATTGTTCATGATAATGTGGTTTTTCCGGCTGAAAATGTAGATTCATTCAGAGGGGTTCCTGAGGCTGTTGTGGTGTAA 786 54.58 MVFCKMAPTSLASRFRKSVTSTALRSYVAEFISTFFYVFSVVGASMSSRKFLPGVVATTDPSSLLMAAIANAFALASAVYIAANISGGHLNPAVTFGMAVAGHVSVPTALFYWFAQMLASVMACIVLRATLVGQRVTSYAITEEMTGFGASVVEGVLTFALVYTVFAASDSRRGPCNAIGAVMIGLMAGANVLAAGPFSGGSVNPACAFGSAIVAGSFKNQAVYWVGPLIGAALAGIVHDNVVFPAENVDSFRGVPEAVVV 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5236661 5237871 + ClCG01G004950.1 Cla01g00487 264076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00487 261 Gene3D Glycerol uptake facilitator protein. 10 252 IPR023271 -
Cla01g00487 261 PANTHER AQUAPORIN-8 10 259 IPR034294 -
Cla01g00487 261 PANTHER AQUAPORIN TIP5-1-RELATED 10 259 - -
Cla01g00487 261 SUPERFAMILY Aquaporin-like 20 247 IPR023271 -
Cla01g00487 261 Pfam Major intrinsic protein 20 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g00487 261 PRINTS Major intrinsic protein family signature 185 207 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g00487 261 PRINTS Major intrinsic protein family signature 222 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g00487 261 PRINTS Major intrinsic protein family signature 71 95 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g00487 261 PRINTS Major intrinsic protein family signature 25 44 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g00487 261 PRINTS Major intrinsic protein family signature 108 127 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g00487 261 PRINTS Major intrinsic protein family signature 153 171 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g00487 261 ProSitePatterns MIP family signature. 89 97 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00487 Cla-Chr1:5236661 Cla09g00167 Cla-Chr9:1719283 1.63E-62 dispersed
Cla01g00487 Cla-Chr1:5236661 Cla10g01892 Cla-Chr10:34818950 4.48E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00487 K09873 - csv:101214078 442.195