Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00499 ATGATGGAGAATATGAGATGTTCAATATTTAGAGGTATTGCAAGTGATTTCCGAGGAAGAGCTTCTTGTTATAAACAAGATTGGATTGGTGGCCTACGTTCAGGAATCGGGATTTTGGCGCCAACTACGTACATCTTTTTTGCTTCCGCGCTGCCCGTCATTGCTTTTGGCGAGCAATTGAGTAGGAACACAGATGGAAGCTTAAGCGCAGTTGAAACTTTGGCTTCTACAGCCATTTGTGGGATTCTTCACTCCATTTTTGGTGGCCAACCTCTTCTTATTGTAGGAGTTGCTGAACCCACCATTGTTATGTACACTTATTTGTTCAACTTTGCAAAAGATAGGAAAGATTTGGGAAGAGAACTCTTCCTTGCTTGGGTTGGATGGGTTTCCGTGTGGACGGCTATGTTATTGATGCTTTTGGCAATATTCAATGCTTGTAGTCTAATCAACAGATTTACAAGAATTGCAGGAGAACTTTTTGCCATTTTGATTTCTACTTTGTTCATTCAAGAAGCTATCAAGGGAGTTGTAAGTGAGTTTAAAATTCCCAAAGCAGAGAATCCAAATATGGAGAGATATGATTTTCATTGGCTTTACACAAATGGATTGCTTGGAATCATATTTACTTTTGGAGTTTCATATTCTTCTTTGAAGAGCAGAAAGGCAAGGTCATGGTTATATGCCACAGGGTGGTTGAGAAGCTTCATTGCAGACTATGGAGTTCCTCTCATGGTTGTAGTATGGACTGCATTATCATTCAGTGTCCCAACAAAAATTCCTTCTGGAGTTCCTAGAAGACTTGTAAGCCCTTTGCCATGGGAATCTGCTTCTTTGTACCATTGGACTGTGGTCAAGGATATGGGGAAAATCCCACCCTCATACATATTTGCAGCTCTTCTCCCTGCTGTGATGATTGCAGGCCTTTACTTTTTTGATCATAGTGTTGCTTCTCAATTGGCACAACAAAAGGAGTTTAATCTTAAGAATCCTTCGGCATATCACTATGACATCTTCTTGCTTGGTTTTATGACTTTACTTTGTGGATTACTTGGGCTTCCTCCCTCAAATGGGGTTTTACCACAGTCTCCAATGCATACTAAAAGCCTTGCAGTTCTTAAGAGGCAGTTGATAAGAAAAAAGATGGTTGAAAGTGCTAAGGAAAGCATAAAAAAGAAAGCTACAAACTCAGAAATCTATGTCCAAATGCAAGATGTGTTCATAGAAATGGATGGTAGCCCAGCTGTTAGTCCACTAGAGATGGATGTAGTGGTGAAAGAATTGGAAGATTTGAAGGAAGCAGTTATGAAAGAAAACAACAACAAAGAAAATGAAAATGAAGAAGAGAAATTTGGTCATCTTGAGAAGCACATTGATTCATATCTTCCAGTTAGAGTAAATGAGCAAAGAGTGAGTAATCTGCTACAGTCAGTCCTAGTGGCTTCATTAATTTTTGCAATACCATTGGTCAAGAAGATCCCAACATCTGTGCTTTGGGGATATTTTGCTTATATGGCCATTGATAGTCTTCCTGGAAACCAATTTTGGGAAAGGATTTTGCTCCTCTTCGTCATGCCTAGTCGACGTTACAAGGTGCTAGAAAATGCTCATGCTTCCTTTGTGGAGTTGGTGCCATTCAAATACATAACCATATTCACTCTCTTTCAACTTGTGTATCTTCTTCTTTGCTATGGAGTGACTTGGATCCCTATAGCTGGAGTCTTGTTTCCCTTACCTTTCTTCTTCCTCATTACCATAAGACAACACATTCTTCCCAAAGTACTCCGATCTCGATATTTGCGAGAGCTCGATGCAGCGGAATATGAAGAAATAAAGGGATCTCCGAAGACCTCGCTTAGTTTTTCTTTCAAGGGAAAGGATTCTACTCATATAGTTGAAGGTGGAGATGAGGTTGAAATGTGTGATGCTGAAATTCTAGATGTGTTGACAACCAATAGAGGGGAGTTGAAGATTAGAACAAGAAGCTTTAATGAAGATGGACATGGTCAGGTTTACCCTGAAATAGTTGAAATAGAATGA 2040 39.66 MMENMRCSIFRGIASDFRGRASCYKQDWIGGLRSGIGILAPTTYIFFASALPVIAFGEQLSRNTDGSLSAVETLASTAICGILHSIFGGQPLLIVGVAEPTIVMYTYLFNFAKDRKDLGRELFLAWVGWVSVWTAMLLMLLAIFNACSLINRFTRIAGELFAILISTLFIQEAIKGVVSEFKIPKAENPNMERYDFHWLYTNGLLGIIFTFGVSYSSLKSRKARSWLYATGWLRSFIADYGVPLMVVVWTALSFSVPTKIPSGVPRRLVSPLPWESASLYHWTVVKDMGKIPPSYIFAALLPAVMIAGLYFFDHSVASQLAQQKEFNLKNPSAYHYDIFLLGFMTLLCGLLGLPPSNGVLPQSPMHTKSLAVLKRQLIRKKMVESAKESIKKKATNSEIYVQMQDVFIEMDGSPAVSPLEMDVVVKELEDLKEAVMKENNNKENENEEEKFGHLEKHIDSYLPVRVNEQRVSNLLQSVLVASLIFAIPLVKKIPTSVLWGYFAYMAIDSLPGNQFWERILLLFVMPSRRYKVLENAHASFVELVPFKYITIFTLFQLVYLLLCYGVTWIPIAGVLFPLPFFFLITIRQHILPKVLRSRYLRELDAAEYEEIKGSPKTSLSFSFKGKDSTHIVEGGDEVEMCDAEILDVLTTNRGELKIRTRSFNEDGHGQVYPEIVEIE 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5339958 5354368 - ClCG01G005060.2 Cla01g00499 264088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00499 679 Gene3D Helical hairpin bin 20 62 - -
Cla01g00499 679 Coils Coil 421 448 - -
Cla01g00499 679 Pfam HCO3- transporter family 464 554 IPR011531 GO:0006820|GO:0016021
Cla01g00499 679 Pfam HCO3- transporter family 9 184 IPR011531 GO:0006820|GO:0016021
Cla01g00499 679 Pfam HCO3- transporter family 203 375 IPR011531 GO:0006820|GO:0016021
Cla01g00499 679 PANTHER ANION EXCHANGE PROTEIN 8 674 IPR003020 GO:0005452|GO:0006820|GO:0016020
Cla01g00499 679 PANTHER BORON TRANSPORTER 4-RELATED 8 674 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00499 Cla-Chr1:5339958 Cla08g01308 Cla-Chr8:25973518 0 dispersed
Cla01g00499 Cla-Chr1:5339958 Cla07g01228 Cla-Chr7:29250432 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00499 K24194 - tcc:18595786 1025.0