Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00499 ATGATGGAGAATATGAGATGTTCAATATTTAGAGGTATTGCAAGTGATTTCCGAGGAAGAGCTTCTTGTTATAAACAAGATTGGATTGGTGGCCTACGTTCAGGAATCGGGATTTTGGCGCCAACTACGTACATCTTTTTTGCTTCCGCGCTGCCCGTCATTGCTTTTGGCGAGCAATTGAGTAGGAACACAGATGGAAGCTTAAGCGCAGTTGAAACTTTGGCTTCTACAGCCATTTGTGGGATTCTTCACTCCATTTTTGGTGGCCAACCTCTTCTTATTGTAGGAGTTGCTGAACCCACCATTGTTATGTACACTTATTTGTTCAACTTTGCAAAAGATAGGAAAGATTTGGGAAGAGAACTCTTCCTTGCTTGGGTTGGATGGGTTTCCGTGTGGACGGCTATGTTATTGATGCTTTTGGCAATATTCAATGCTTGTAGTCTAATCAACAGATTTACAAGAATTGCAGGAGAACTTTTTGCCATTTTGATTTCTACTTTGTTCATTCAAGAAGCTATCAAGGGAGTTGTAAGTGAGTTTAAAATTCCCAAAGCAGAGAATCCAAATATGGAGAGATATGATTTTCATTGGCTTTACACAAATGGATTGCTTGGAATCATATTTACTTTTGGAGTTTCATATTCTTCTTTGAAGAGCAGAAAGGCAAGGTCATGGTTATATGCCACAGGGTGGTTGAGAAGCTTCATTGCAGACTATGGAGTTCCTCTCATGGTTGTAGTATGGACTGCATTATCATTCAGTGTCCCAACAAAAATTCCTTCTGGAGTTCCTAGAAGACTTGTAAGCCCTTTGCCATGGGAATCTGCTTCTTTGTACCATTGGACTGTGGTCAAGGATATGGGGAAAATCCCACCCTCATACATATTTGCAGCTCTTCTCCCTGCTGTGATGATTGCAGGCCTTTACTTTTTTGATCATAGTGTTGCTTCTCAATTGGCACAACAAAAGGAGTTTAATCTTAAGAATCCTTCGGCATATCACTATGACATCTTCTTGCTTGGTTTTATGACTTTACTTTGTGGATTACTTGGGCTTCCTCCCTCAAATGGGGTTTTACCACAGTCTCCAATGCATACTAAAAGCCTTGCAGTTCTTAAGAGGCAGTTGATAAGAAAAAAGATGGTTGAAAGTGCTAAGGAAAGCATAAAAAAGAAAGCTACAAACTCAGAAATCTATGTCCAAATGCAAGATGTGTTCATAGAAATGGATGGTAGCCCAGCTGTTAGTCCACTAGAGATGGATGTAGTGGTGAAAGAATTGGAAGATTTGAAGGAAGCAGTTATGAAAGAAAACAACAACAAAGAAAATGAAAATGAAGAAGAGAAATTTGGTCATCTTGAGAAGCACATTGATTCATATCTTCCAGTTAGAGTAAATGAGCAAAGAGTGAGTAATCTGCTACAGTCAGTCCTAGTGGCTTCATTAATTTTTGCAATACCATTGGTCAAGAAGATCCCAACATCTGTGCTTTGGGGATATTTTGCTTATATGGCCATTGATAGTCTTCCTGGAAACCAATTTTGGGAAAGGATTTTGCTCCTCTTCGTCATGCCTAGTCGACGTTACAAGGTGCTAGAAAATGCTCATGCTTCCTTTGTGGAGTTGGTGCCATTCAAATACATAACCATATTCACTCTCTTTCAACTTGTGTATCTTCTTCTTTGCTATGGAGTGACTTGGATCCCTATAGCTGGAGTCTTGTTTCCCTTACCTTTCTTCTTCCTCATTACCATAAGACAACACATTCTTCCCAAAGTACTCCGATCTCGATATTTGCGAGAGCTCGATGCAGCGGAATATGAAGAAATAAAGGGATCTCCGAAGACCTCGCTTAGTTTTTCTTTCAAGGGAAAGGATTCTACTCATATAGTTGAAGGTGGAGATGAGGTTGAAATGTGTGATGCTGAAATTCTAGATGTGTTGACAACCAATAGAGGGGAGTTGAAGATTAGAACAAGAAGCTTTAATGAAGATGGACATGGTCAGGTTTACCCTGAAATAGTTGAAATAGAATGA 2040 39.66 MMENMRCSIFRGIASDFRGRASCYKQDWIGGLRSGIGILAPTTYIFFASALPVIAFGEQLSRNTDGSLSAVETLASTAICGILHSIFGGQPLLIVGVAEPTIVMYTYLFNFAKDRKDLGRELFLAWVGWVSVWTAMLLMLLAIFNACSLINRFTRIAGELFAILISTLFIQEAIKGVVSEFKIPKAENPNMERYDFHWLYTNGLLGIIFTFGVSYSSLKSRKARSWLYATGWLRSFIADYGVPLMVVVWTALSFSVPTKIPSGVPRRLVSPLPWESASLYHWTVVKDMGKIPPSYIFAALLPAVMIAGLYFFDHSVASQLAQQKEFNLKNPSAYHYDIFLLGFMTLLCGLLGLPPSNGVLPQSPMHTKSLAVLKRQLIRKKMVESAKESIKKKATNSEIYVQMQDVFIEMDGSPAVSPLEMDVVVKELEDLKEAVMKENNNKENENEEEKFGHLEKHIDSYLPVRVNEQRVSNLLQSVLVASLIFAIPLVKKIPTSVLWGYFAYMAIDSLPGNQFWERILLLFVMPSRRYKVLENAHASFVELVPFKYITIFTLFQLVYLLLCYGVTWIPIAGVLFPLPFFFLITIRQHILPKVLRSRYLRELDAAEYEEIKGSPKTSLSFSFKGKDSTHIVEGGDEVEMCDAEILDVLTTNRGELKIRTRSFNEDGHGQVYPEIVEIE 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5339958 5354368 - ClCG01G005060.2 Cla01g00499 264088

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00499 679 Gene3D Helical hairpin bin 20 62 - -
Cla01g00499 679 Coils Coil 421 448 - -
Cla01g00499 679 Pfam HCO3- transporter family 464 554 IPR011531 GO:0006820|GO:0016021
Cla01g00499 679 Pfam HCO3- transporter family 9 184 IPR011531 GO:0006820|GO:0016021
Cla01g00499 679 Pfam HCO3- transporter family 203 375 IPR011531 GO:0006820|GO:0016021
Cla01g00499 679 PANTHER ANION EXCHANGE PROTEIN 8 674 IPR003020 GO:0005452|GO:0006820|GO:0016020
Cla01g00499 679 PANTHER BORON TRANSPORTER 4-RELATED 8 674 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00499 K24194 BOR; boron transporter - tcc:18595786 1025.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00499 Cla-Chr1:5339958 Cla08g01308 Cla-Chr8:25973518 0 dispersed
Cla01g00499 Cla-Chr1:5339958 Cla07g01228 Cla-Chr7:29250432 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla05g02395 . 51 417 Antiporters AT5G46110 74.1 6.4e-149 524.2
Cla01g02275 . 1 345 Antiporters AT5G46110 66.1 1.0e-130 463.8
Cla10g00522 CCT,ECH 1 395 Antiporters AT5G54800 73.7 1.5e-160 562.8
Cla05g01512 CCT,ECH 24 490 Antiporters AT5G54800 61.5 3.3e-147 518.5
Cla01g02156 . 98 427 Antiporters AT5G54800 74.4 6.8e-137 484.2
Cla09g01867 . 51 394 Antiporters AT3G01550 64.6 1.4e-121 433.3
Cla01g01303 . 53 462 Antiporters AT3G01550 53.0 4.7e-106 381.7
Cla01g01303 . 1 464 Antiporters AT5G33320 65.7 1.4e-148 523.1
Cla09g01867 . 69 397 Antiporters AT5G33320 61.2 2.9e-109 392.5
Cla10g00522 CCT,ECH 39 396 Antiporters AT1G61800 78.2 9.7e-158 553.5
Cla05g01512 CCT,ECH 24 491 Antiporters AT1G61800 61.8 4.4e-150 528.1
Cla01g02156 . 98 424 Antiporters AT1G61800 77.9 2.2e-146 515.8
Cla05g00261 . 106 405 Antiporters AT1G61800 52.6 1.3e-85 313.9
Cla05g00261 . 48 417 Antiporters AT5G17630 74.2 3.4e-150 528.5
Cla10g00522 CCT,ECH 89 394 Antiporters AT5G17630 53.7 7.5e-89 324.7
Cla10g00392 . 80 453 Antiporters AT3G13320 79.4 4.5e-161 564.7
Cla02g01035 . 72 450 Antiporters AT3G13320 76.6 1.2e-156 550.1
Cla07g01351 . 170 539 Antiporters AT3G13320 75.7 1.8e-154 542.7
Cla04g00705 CCT,ECH 5 444 Antiporters AT2G38170 68.7 1.6e-156 549.7
Cla10g02088 CCT,ECH 8 405 Antiporters AT2G38170 61.5 2.9e-129 459.1
Cla03g00075 . 32 375 Antiporters AT2G38170 57.6 3.8e-105 379.0
Cla04g00705 CCT,ECH 1 412 Antiporters AT3G51860 68.6 7.0e-144 507.7
Cla10g02088 CCT,ECH 4 397 Antiporters AT3G51860 65.5 3.1e-136 482.3
Cla03g00075 . 32 365 Antiporters AT3G51860 62.2 6.8e-107 384.8
Cla02g01035 . 64 417 Antiporters AT3G51860 50.4 2.0e-82 303.5
Cla10g00392 . 80 424 Antiporters AT3G51860 51.3 1.3e-81 300.8
Cla07g01351 . 176 507 Antiporters AT3G51860 50.1 1.3e-78 290.8
Cla04g00705 CCT,ECH 34 449 Antiporters AT5G01490 59.1 1.0e-128 457.2
Cla10g02088 CCT,ECH 29 401 Antiporters AT5G01490 61.1 6.8e-120 427.9
Cla03g00075 . 26 375 Antiporters AT5G01490 52.4 5.3e-96 348.6
Cla10g00392 . 79 453 Antiporters AT1G55720 75.3 9.6e-151 530.4
Cla02g01035 . 72 446 Antiporters AT1G55720 73.7 1.6e-145 513.1
Cla07g01351 . 170 536 Antiporters AT1G55720 71.4 1.7e-139 493.0
Cla10g00392 . 79 453 Antiporters AT1G55730 80.0 1.1e-162 570.1
Cla02g01035 . 54 446 Antiporters AT1G55730 74.4 2.7e-158 555.4
Cla07g01351 . 170 540 Antiporters AT1G55730 76.3 7.5e-156 547.4
Cla03g01583 . 4 534 Antiporters AT5G27150 77.6 1.1e-233 806.2
Cla06g00506 . 22 527 Antiporters AT5G27150 74.8 1.4e-217 752.7
Cla09g00597 . 102 555 Antiporters AT5G27150 64.8 4.4e-174 608.2
Cla09g02040 . 12 557 Antiporters AT5G27150 50.1 3.9e-138 488.8
Cla06g00506 . 22 536 Antiporters AT3G06370 71.9 3.9e-210 728.0
Cla03g01583 . 5 533 Antiporters AT3G06370 70.6 8.9e-207 716.8
Cla09g00597 . 102 555 Antiporters AT3G06370 61.8 1.8e-159 559.7
Cla09g02040 . 1 564 Antiporters AT5G55470 56.1 2.2e-170 595.9
Cla03g01583 . 18 520 Antiporters AT5G55470 60.2 6.4e-170 594.3
Cla06g00506 . 19 514 Antiporters AT5G55470 58.9 1.1e-166 583.6
Cla09g00597 . 88 547 Antiporters AT5G55470 51.7 1.6e-133 473.4
Cla03g01583 . 10 537 Antiporters AT3G05030 78.8 7.4e-238 820.1
Cla06g00506 . 22 527 Antiporters AT3G05030 75.6 5.2e-223 770.8
Cla09g00597 . 102 555 Antiporters AT3G05030 64.5 4.0e-175 611.7
Cla01g00499 . 104 674 Antiporters AT1G15460 69.5 1.3e-227 786.2
Cla07g01228 . 102 676 Antiporters AT1G15460 69.3 3.6e-227 784.6
Cla08g01308 . 99 705 Antiporters AT1G15460 59.9 3.3e-204 708.4
Cla10g01116 . 102 645 Antiporters AT1G15460 59.2 5.7e-180 627.9
Cla01g01302 . 102 644 Antiporters AT1G15460 57.2 8.5e-176 614.0
Cla10g01116 . 3 709 Antiporters AT3G06450 69.8 8.3e-293 1003.0
Cla01g01302 . 3 713 Antiporters AT3G06450 68.3 2.8e-280 961.4
Cla01g00499 . 10 657 Antiporters AT3G06450 55.6 1.1e-215 746.9
Cla07g01228 . 6 656 Antiporters AT3G06450 55.4 8.5e-213 737.3
Cla08g01308 . 3 708 Antiporters AT3G06450 51.8 1.7e-208 723.0
Cla10g01116 . 1 716 Antiporters AT2G47160 79.1 0.0e+00 1153.3
Cla01g01302 . 1 670 Antiporters AT2G47160 74.5 3.0e-303 1037.7
Cla01g00499 . 10 657 Antiporters AT2G47160 56.7 1.5e-214 743.0
Cla07g01228 . 1 656 Antiporters AT2G47160 55.7 6.4e-213 737.6
Cla08g01308 . 4 700 Antiporters AT2G47160 53.5 3.0e-210 728.8
Cla07g01228 . 1 676 Antiporters AT1G74810 68.7 4.7e-274 940.6
Cla01g00499 . 10 678 Antiporters AT1G74810 69.3 1.2e-272 936.0
Cla08g01308 . 4 704 Antiporters AT1G74810 61.5 3.0e-244 841.6
Cla10g01116 . 7 645 Antiporters AT1G74810 59.8 4.3e-219 758.1
Cla01g01302 . 7 648 Antiporters AT1G74810 58.2 2.6e-216 748.8
Cla10g01116 . 1 708 Antiporters AT3G62270 81.5 0.0e+00 1156.7
Cla01g01302 . 1 705 Antiporters AT3G62270 75.2 2.3e-308 1054.7
Cla01g00499 . 10 657 Antiporters AT3G62270 58.6 1.9e-217 752.7
Cla08g01308 . 4 700 Antiporters AT3G62270 54.9 1.0e-215 746.9
Cla07g01228 . 1 656 Antiporters AT3G62270 57.3 2.3e-215 745.7
Cla01g00499 . 2 674 Antiporters AT4G32510 64.9 6.3e-255 877.1
Cla07g01228 . 1 673 Antiporters AT4G32510 64.5 1.8e-254 875.5
Cla08g01308 . 4 714 Antiporters AT4G32510 62.7 4.5e-253 870.9
Cla10g01116 . 1 645 Antiporters AT4G32510 55.1 1.1e-206 716.8
Cla01g01302 . 1 644 Antiporters AT4G32510 54.1 1.2e-205 713.4
Cla08g01308 . 4 705 Antiporters AT5G25430 64.9 3.1e-254 874.8
Cla01g00499 . 10 674 Antiporters AT5G25430 64.7 7.7e-245 843.6
Cla07g01228 . 7 673 Antiporters AT5G25430 64.7 3.8e-244 841.3
Cla10g01116 . 7 645 Antiporters AT5G25430 56.2 7.0e-206 714.1
Cla01g01302 . 7 656 Antiporters AT5G25430 54.4 1.1e-201 700.3
Cla01g00669 . 27 1257 Antiporters AT2G01980 51.0 0.0e+00 1084.7
Cla01g00669 . 20 743 Antiporters AT1G14660 56.4 5.0e-221 764.6
Cla03g01507 . 19 587 Antiporters AT5G11800 75.3 1.9e-223 772.3
Cla08g01666 . 51 617 Antiporters AT5G11800 69.8 1.9e-202 702.6
Cla05g00817 . 57 600 Antiporters AT5G11800 65.9 5.5e-186 647.9
Cla05g00817 . 31 598 Antiporters AT5G51710 79.2 4.2e-244 840.9
Cla03g01507 . 51 560 Antiporters AT5G51710 68.6 9.2e-183 637.1
Cla08g01666 . 49 591 Antiporters AT5G51710 58.9 1.1e-159 560.5
Cla03g01507 . 39 584 Antiporters AT2G19600 80.9 8.9e-229 790.0
Cla08g01666 . 42 617 Antiporters AT2G19600 67.8 1.5e-199 693.0
Cla05g00817 . 32 585 Antiporters AT2G19600 64.7 1.7e-179 626.3
Cla05g01095 . 171 586 Antiporters AT1G49810 76.6 1.9e-177 619.0
Cla05g01095 . 1 604 Antiporters AT3G19490 73.6 1.6e-243 839.0
Cla02g02252 . 454 940 Antiporters AT5G12860 89.9 1.2e-251 865.9
Cla10g00893 . 83 577 Antiporters AT5G64280 67.3 1.6e-195 679.5
Cla10g00893 . 1 577 Antiporters AT5G64290 70.3 6.3e-216 747.3
Cla07g00234 . 540 914 Antiporters AT4G28390 80.1 2.7e-170 595.1
Cla08g01581 . 524 904 Antiporters AT4G28390 74.0 1.7e-156 549.3
Cla04g01138 . 5 307 Antiporters AT4G28390 63.2 4.5e-109 391.7
Cla08g01581 . 522 905 Antiporters AT3G08580 79.1 1.8e-169 592.4
Cla07g00234 . 566 913 Antiporters AT3G08580 77.7 2.0e-149 525.8
Cla04g01138 . 7 307 Antiporters AT3G08580 57.6 5.2e-97 351.7
Cla08g01581 . 522 905 Antiporters AT5G13490 82.4 5.5e-179 624.0
Cla07g00234 . 566 913 Antiporters AT5G13490 82.2 4.0e-161 564.7
Cla04g01138 . 8 307 Antiporters AT5G13490 61.5 6.2e-106 381.3
Cla04g01138 . 4 301 Antiporters AT5G17400 80.2 2.2e-138 488.8
Cla07g00234 . 614 900 Antiporters AT5G17400 64.5 1.3e-109 393.3
Cla08g01581 . 605 896 Antiporters AT5G17400 63.0 5.3e-108 387.9
Cla03g01620 . 4 602 Antiporters AT1G08960 59.9 1.6e-179 626.3
Cla10g01515 . 61 585 Antiporters AT5G17850 52.8 6.6e-149 524.6
Cla10g01048 . 47 618 Antiporters AT2G47600 66.9 1.5e-206 716.1
Cla07g01247 CCT 1 300 Antiporters AT1G79900 68.4 1.7e-116 416.0
Cla09g00190 CCT 1 304 Antiporters AT1G79900 68.2 3.0e-116 415.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001156 1 4 1 1 1 3 3 3 2 2 3 3 3 2 2 3 3 2 3 3 2 2 2 2 2 2 3 9 4 3 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00499 Cla_Chr01 FPKM 1.531959 0.907889 1.195109 1.448775 5.022457 5.023039 5.741876 0.955305 0.673695 0.918194