Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00501 ATGACTAATGTTCGAAATGATCCAATTTTAAAAATGGAAACAACATGTGGAACACTTCTACACGAACTTCAGATCATTTGGGATGAAGTAGGGGAATCTGAGGCCACAAGGGACAAAATGTTGCTTGAGGTTGAACAAGAGTGCTTAGAAGTTTACAGAAGAAAGGTAGATCAAGCAAACCGCTTTAGAGCTCAGCTAAGGCAGGCAATTGCCGATTCTGAAGCAGAATTGGCTGCCATCTGCTCTGCAATGGGAGAGAGACCAGTACATACGAGGCAGGCTGATCAAAAGACTGGAACCTTGAGAGAAGAGATGGCCCGTGTTCTTCCACAAGTGGATGAAATGCGGAAAAGAAAAGTAGACAGAAGAAATCAAATTTTAGAAGTCCTAGAACAAATACAGAAGATATCCTATGAGATTTATGGATCAAAATTTTCACATTCCAGTGTAGCTATTGATGAAAATGATTTATCATTGAGGAAGCTAGAAGAATTGCAAGGACAGTTACATACGCTACAGAAGGAGAAGAGTGACAGGCAGATGGTTGTTCAGGAGCACCTTCAGACTCTAAACTTGCTTTGTTCAGTGCTTGGGATGGATTTCAAGCAAACAGTGAATGGATTTCATCCTAATTTGGGTGACCCAGATGGAACTTTTAACATAACTAGTGAATCAATTGAAACCCTGGCTGCTGCAATAATTAATTTGCGCGAGGTCAAATTACGAAGAATGCAGCGGCTCCAAGATCTTGCTACAACTTTGTTGGAGCTTTGGAATCTAATGGATACACCAATGGAAGAACAACAGTTGTTCCAAAACGTGACATGTAATATAGCTGCTTCAGAAGATGAAGTAAACGAACCCAATAGTCTCTCTGTGGACTCAATTAATTCTGTTGAAGCAGAAGTGTCTCGGTTAGAAGAGTTAAAATCAAGCAAGATGAAAGAACTTGTTTTGAAGAAGAGGTCAGAGCTGGATGAGATTTGTAGAAAAACGCATTTAGTCCTGGAAGAAGATACAATAGTGGAATATGCAATTGAAACTATCGACTCTGGAGATGTTGACTCTGCCATTATTCTTGAGCAAATTGAGCTTCAGATTGCCAGGATTAAAGAGGAAGCATTTGTCAGGAAAGAAATTCTTGAAAAAGTTGAGAAATGGTTGACTGCCTGTGATGAGGAGTGTTGGCTGGAGGAGTATAATAGGGATGAAAATAGATATAATGCTGGTAGAGGGGCACATCTCATTCTCAAACGCGCAGAGAAGGCCCGAGCTTTGGTTAATAAGCTTCCAGGAATGGTGGATGCATTAACTTCAAAAACAATGGCATGGGAGAAGGAAAGAGGGATTGAGTTTACATACGATGGAGTCAGTCTGCTCAGTATGCTTGAAGAGTATTCTGTATTAAGGCAAGAGAAAGAGCAGGAGCGTCGCAGGCTGCGGGACCAGAAGAAACTCCAGGGACAGCTAATAGCAGAACAGGAGGCTCTTTATGGATCGAAGCCAAGCCCCTCAAAACCCCAGAGTGTTAAAAAAGCTTCCAGAGCTTCAGCTGCAGGTGCAAATAGTAAAAGGCTTTCTCTTGGAGGGACGTTGCACCAAACGCCCAAGCCTGATCCAATTCACAAGGCAACACCTCAGTCACGTCCGTCTAGGAAAGGTGACCACCTGAATGATCAAAACTATGATGAAGGATTTGGAGCTCTTCCAATTGCTGGCCGAAGAGAACTTGATTTTTCTGGTCAACCTCCGAGCCACAATAACTCGCTTGCCAATGCTCGTGAACAACCTGAGTTGGGGATTCGGAAACCTTTTGCACCAATTGCTACCACAGTCCAACCAAAGACGAACACAACGAACTCAATCAATGATGCAAACACAGCATCTAGTGAACCGTTGCAAAAAACAAGCCCAACTAGCAATGTGCCATTTACACCTTTGAAAAAGATCTCAGTTGCTACTGATGAAGACCAAAACATGACTCCAAAGGCAATGTCAATTCCAGTACCATCTACCCCTTCAACTCTATCAGTTGCAATGCAGACCACTACAACTCCGGCAGTTGCCCTGCCTCCTCCCGCTTTCAAAGCTGAGGAAATTCCTGAAGACAACGTTGAATATTCGTTCGAGGAAAGAAGAGCCGGAGTGAATAATGGAGGTTTAGGGTTTAAGGTGTCGGTTTACCGTTTATGTACTTTTGCTTTAGAACACATCTTTTTCTTTTCTGTCACTGTAAAAATGGAAGAGAAAGAGGGAGGAGTGGATTTCGGGTTTGCAGTAAAAGTGAGCCAAGCTCCAGAGAGCTTCGGGATGATGGATTCGAGACCTGAAAATTCAAGCACAGATGGTGACACGCCGCCGCCGCAGCCGCCGGCGAGTGTTCCGACGGCGGGGGCTACAGATGGAAAGAAGAGAAGAGGGAGACCGAGAAAGTACGGTCCCGATGGGACTGTAGCTCCAACATTGTCACCAATGCCGATTTCGTCATCGATTCCACTGACCGGAGAATTTCCGGGTTGGAAACGGGGAAGAGGGCGGTCAGTAGAGTCGATTAAGAAGTCGCGGAAGTTCGAGTATGAGATTCCAGGTAACAAGGTTGCCTTCTTTGCTGGAGCAGATTTCACACCTCACGTGATCACTGTTAATATTGGTGAGGATGTTAACTTGAAAGTTATGTCATTTTCTCAACAAGGATCTCGGGCGATTTGTATACTCTCTGCTAATGGTATGGTTTCAAATGTTACACTTCGGCAGTCAACATCTTCTGGGGGTACTTTGACATATGAGGGTCGATTTGAGATACTTTCATTGTCTGGATCATATATGCCTTCTGAGATTGGTGGAACAAAGAGCCGATCTGGAGGGATGAGTGTCTCTTTGGCTGGCCCAGATGGCCGGGTGATGGGTGGTGGACTTGCCGGCATGCTGATAGCAGCTGGTCCAGTGCAGGTGGTGGTGGGTAGTTTCCTGCCACCAGGTCACCAGCAGGAAAACAAACCAAAGAAGAATAGGATGGAGCCTACATCGAACACAAATTTGCCTCCAGCCAATGTTCTTTCTGGCGAAGGGACAAAGGAAGTACTTGGAGGAGTGAAGCCCGTAGTTGCATCGACTCTAATTGGAGATAAAGCAGCTTCTTTAGACCAAACTTCAGCTTTTAAGACTTCACAAGTCAACGACAAATCACCTTTTCTACAAGAATCAAGAGGTGTCCTCAACCATTCAAACCATGAGGTTTCTTGTTAA 3246 44.36 MTNVRNDPILKMETTCGTLLHELQIIWDEVGESEATRDKMLLEVEQECLEVYRRKVDQANRFRAQLRQAIADSEAELAAICSAMGERPVHTRQADQKTGTLREEMARVLPQVDEMRKRKVDRRNQILEVLEQIQKISYEIYGSKFSHSSVAIDENDLSLRKLEELQGQLHTLQKEKSDRQMVVQEHLQTLNLLCSVLGMDFKQTVNGFHPNLGDPDGTFNITSESIETLAAAIINLREVKLRRMQRLQDLATTLLELWNLMDTPMEEQQLFQNVTCNIAASEDEVNEPNSLSVDSINSVEAEVSRLEELKSSKMKELVLKKRSELDEICRKTHLVLEEDTIVEYAIETIDSGDVDSAIILEQIELQIARIKEEAFVRKEILEKVEKWLTACDEECWLEEYNRDENRYNAGRGAHLILKRAEKARALVNKLPGMVDALTSKTMAWEKERGIEFTYDGVSLLSMLEEYSVLRQEKEQERRRLRDQKKLQGQLIAEQEALYGSKPSPSKPQSVKKASRASAAGANSKRLSLGGTLHQTPKPDPIHKATPQSRPSRKGDHLNDQNYDEGFGALPIAGRRELDFSGQPPSHNNSLANAREQPELGIRKPFAPIATTVQPKTNTTNSINDANTASSEPLQKTSPTSNVPFTPLKKISVATDEDQNMTPKAMSIPVPSTPSTLSVAMQTTTTPAVALPPPAFKAEEIPEDNVEYSFEERRAGVNNGGLGFKVSVYRLCTFALEHIFFFSVTVKMEEKEGGVDFGFAVKVSQAPESFGMMDSRPENSSTDGDTPPPQPPASVPTAGATDGKKRRGRPRKYGPDGTVAPTLSPMPISSSIPLTGEFPGWKRGRGRSVESIKKSRKFEYEIPGNKVAFFAGADFTPHVITVNIGEDVNLKVMSFSQQGSRAICILSANGMVSNVTLRQSTSSGGTLTYEGRFEILSLSGSYMPSEIGGTKSRSGGMSVSLAGPDGRVMGGGLAGMLIAAGPVQVVVGSFLPPGHQQENKPKKNRMEPTSNTNLPPANVLSGEGTKEVLGGVKPVVASTLIGDKAASLDQTSAFKTSQVNDKSPFLQESRGVLNHSNHEVSC 1081
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5399596 5413437 + ClCG01G005090.2 Cla01g00501 264090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00501 1081 Gene3D - 366 500 - -
Cla01g00501 1081 MobiDBLite consensus disorder prediction 613 645 - -
Cla01g00501 1081 Pfam Microtubule associated protein (MAP65/ASE1 family) 18 508 - -
Cla01g00501 1081 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 5 632 IPR007145 GO:0000226|GO:0008017
Cla01g00501 1081 MobiDBLite consensus disorder prediction 546 560 - -
Cla01g00501 1081 Coils Coil 155 175 - -
Cla01g00501 1081 MobiDBLite consensus disorder prediction 769 845 - -
Cla01g00501 1081 ProSiteProfiles PPC domain profile profile. 871 1010 IPR005175 -
Cla01g00501 1081 MobiDBLite consensus disorder prediction 493 566 - -
Cla01g00501 1081 Pfam Plants and Prokaryotes Conserved (PCC) domain 876 989 IPR005175 -
Cla01g00501 1081 MobiDBLite consensus disorder prediction 990 1020 - -
Cla01g00501 1081 CDD DUF296 875 989 IPR005175 -
Cla01g00501 1081 PANTHER 65-KDA MICROTUBULE-ASSOCIATED PROTEIN 3 5 632 - -
Cla01g00501 1081 Coils Coil 459 486 - -
Cla01g00501 1081 MobiDBLite consensus disorder prediction 501 516 - -
Cla01g00501 1081 Coils Coil 49 76 - -
Cla01g00501 1081 Coils Coil 296 316 - -
Cla01g00501 1081 SUPERFAMILY AF0104/ALDC/Ptd012-like 873 1005 - -
Cla01g00501 1081 Gene3D - 876 1006 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00342 Cla-Chr1:3726056 Cla01g00501 Cla-Chr1:5399596 1.23E-76 dispersed
Cla01g00501 Cla-Chr1:5399596 Cla10g00472 Cla-Chr10:6242811 5.70E-159 dispersed
Cla02g02125 Cla-Chr2:36295670 Cla01g00501 Cla-Chr1:5399596 1.62E-19 dispersed
Cla04g00956 Cla-Chr4:24653872 Cla01g00501 Cla-Chr1:5399596 1.51E-17 dispersed
Cla11g01851 Cla-Chr11:32052269 Cla01g00501 Cla-Chr1:5399596 2.85E-59 dispersed
Cla01g00501 Cla-Chr1:5399596 Cla05g00810 Cla-Chr5:7912041 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00501 K16732 - csv:101215212 1236.48