Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g00509 | ATGTCCGAATCATCTCCCTCTGATCATAATCCCTCTCCCTCTGCTGCCAAGCTCCGCAAGATCCCTCCCATTCCCATTCGGCGCGATTCCATACCCAATGCCGGAGACTCCGATTCCTATCATGAAAACGATGCTCCCGAGGATCAACCTCTTCAACCTGACGATTCCTCCATCATTATGGCCTCCTCTCTTGGGTTGAATCACATTCGTACGCGTTCTGCTCCTTTGCCGTTACGAACCTCTGCTGTTGGCACGCCCTCCAATTTGGGAGATAATTCTAGAAATAATGTTGTCTCTAGTGAGACCGAGTCCGAGCCAAAAGTTTCCTCCATTGAACAAGGAAAAAAAGTTCTTTGGAGTCAATCGAAATCGTTCAGATATCCTACATCTCTGAATCATGATCTTGAGGGCAATCATGTAGCGTTTGGAAAGGAAATTCAGTCTCCACGATTCCGTGCCATACTGCGTGTAACTAGTGGAAGAAGGAGGAGAACCCCGGATATCAAAAGCTTCTCTCACGAGCTCAATTCAAAGGGAGTTCGCCCTTTTCCACTTTGGAAACCTCGGGCATTTGGGCATTTGGAAGAGATCATGGTGGCTATCAGAGCAAAATTTGACAGATTGAAGGATGATGTGAATTACGAATTGGGCATTTTTGCTGGAGATCTCGTAGATAAACTTGAAAAGACAGACCAGTCTCAGCCTGAACTAAAAGAGGGTTTGGAGGACTTATTGGTGGTTGCTCGGAAATGTGCGACAATGTCGCCTACTGAATTCTGGACGAAAGGTGAAGGGATTGTCCAAAATCTAGACGATCGGCGGCAGGAGCTGTCGTTAGGGATTCTTAAGCAAACCCATACCCGCCTTCTCTTCATCTTGACACGATGTACTCGGCTTATTCAGTTCAGAAAGGAGAGTGGTTATGAAGATGAACACATTTTGGGTCTTCATCAACTTAGTGATCTAGGAATTTATCCAGAGAAACTTAGGCAGCTCGAACAACTTGACTTTAGTGATCCATTGATTGTGAAAGAAGCAATTGAGCAGCAGCTAAAGTTGGTTGGTAAGGATCAAGCCAGTCGACTGGTGAAGCAAGATTTAGGCCAAAGTTTTAGTACTAGTGCTGGAAATGTCGAGCTGGACTCTTCCTTAAGTGTTGATTCATCTACAAGCATGTATAGGATGGCATCCTGGAAAAAGCTACCATCAGCAGCTGAGAAGAACCGGAAAGACTCTGACTCCACTGGAACACCTTCCAAGGATAAACTTGAACTGTTGCATGTACATGAAGCTAAGACCGGGAGCAATAACCAATTAGATACCCCATCTAGTCATATTGCGCATTCAGAAGCACCTCCTAAAGAACAAAAAGTATCTTGGGGAATATGGGGTTTTCATCAAAATGCCACTTTTGAGAATTTGATGATTTGTCGGATTTGTGAGGTTGAAATTCCGACCATTCATGTTGAGGAGCATTCTCGAATATGTACAATTGCCGATAGGTGTGATTTGAAAGGTTTAACTGTGAATGAGCGCCTTGAACGGGTTGCTACAGCTCTTGAAAAGATACTAGAGTCTTGGACGCCTAAAAGTACACCAAGAAGTTGTGATACTTCATGTGGAAATTTTGATACCGTCAAGGTTTCTACATCAAGTATGCAAGAAGAGGTTTTTGAGCTGTCATCTAAAGGAATCAATTTGTCAAGTCGAAACTCTGAAGATCTGCTTGATTCCCTCCCTGTTACTGGCAACTCCTCCTTCATGGAAAGTCAGGATATTTTTCCTGATTCATCAGACAATCGACCATTTATTTTCACACCAGATCACAGTACAAAATCAACGTCAGCTGGAACTCTAACACCAAGATCACCTCTTTTAACACCTAGATCCAGCCAGATTGAATTGTTGTTGCATGGACGAAGAGCAATATCTGAACTTGAAAATTATCAGCAGATTTACAAATTATTGGATATTGTTCGTTCCATTGCAAATGTTAACAACTCTGGATACGGTGCATTGGAGTCCATGCTTGATCGATTAGAGGACCTTAAATATGCAATCCAGGACAGGAAGGTGGATGCCCTTGTTGTGGAGACTTTTGGAAGGCGCATAGAGAAGCTCTTGCAGGAAAAATATGTGCATCTCTGTGGGCAAATTGAAGATGATAAAGTAGACTCTTCACATGGCATGGTTGATGAAGAGAGTTCAGTGGAAGATGATACTGTTCGTAGTTTGCGTGCAAGTCCTGTTAATACATCAAAAGATCGAACATCTATTGAAGATTTTGAAATAATTAAACCAATTAGTAGAGGGGCATATGGCCGAGTTTTTCTTGCCAGAAAAAGAGCAACTGGAGACTTGTTTGCAATAAAGGTTTTAAAGAAGGCTGATATGATTCGCAAGAATGCAGTTGAAAGTATTTTGGCTGAACGTAATATCCTTATCTCAGTTCGCAACCCTTTTGTGGTCCGCTTTTTCTACTCTTTCACATGTAGGGAAAATCTGTATCTGGTCATGGAATACTTAAATGGAGGTGATATTTATTCCTTGCTGAGAAACCTAGGGTGCTTAGATGAAGATATGGCTCGTATTTATATCGCTGAAATTGTTCTTGCTTTGGAGTATTTGCACTCCTTAAATGTGATTCACAGAGACTTAAAGCCAGATAACTTATTGATTGGTCAAGATGGTCACATTAAGGCAAGTAATTCTGCTTATGTTATGGACTTAAAATTGTCCTCTCCAGAATTTGAAATACGAGATCCTTGTGGTACTTTCTTAGAAGCTTTATGGCAGATTTTAAGGATTCTAATAACATGGGTTAGAACCTTGAAGGAAGCTGTCCAACTTGGAGAAGATTTAAGTGGCTGCTTTATTCTAAATTTTATTGGAATCATTGGGGGCCTTGTCCACGAGCATAACAAGATCCTCTTAGATGCCCATGTTTCCTCTAGAATCTATCTTACCTTCCATTTGAATAAGGAAAAACCTCCCAATAGCTCTCTCACTGCAGCCATTTTGAAGACAGAGGTTACAAAGTTGACAGATTTTGGGCTCTCCAAGATTGGTCTTATCAATAGTACAGATGATTTCTCAGGTCCATCAATCAGTGGAACTTCTTCACTTGGAGACAATGGACCAACACCTCAATCTTTGTCAAAAAGAGAACACAGACAAAAGCATTCAGTGGTTGGTACTCCAGATTATTTGGCTCCTGAGATACTTCTGGGCATGGGACATGGTGTAACTGCGGATTGGTGGTCTGTTGGAGTAATTCTTTTTGAGATGCTTGTAGGAATACCGCCGTTCAATGCAGAAAATCCACAGCAAATTTTTGATAATATCATTAACAGAGACATACCGTGGCCCAAGGTGCCTGACGAGATGAGTTATGAAGCCCATGATTTGATTGACAAATTGTTGACTGAAAATTCAGTTCAAAGACTGGGAGCTACTGGAGCCAGAGAGGTGAAGGAACATCCTTTCTTCAAAGATATTAACTGGGAAACACTTGCAAGGCAGAAGGCCATGTTTATACCATCAGCAGAGCCACAGGATACAAGTTATTTCATGAGCCGTTATATATGGAATCCAGAAGATGAGGATTTTAATGGTGGAAGTGACTTTGATGATCATGATTTGACTGATACTTGCAGCAGTAGTTCATTTAGTAACCTTCAAGATGAAGACGGAGACGAATGTGGTAGTTTGGCTGACTTCTGTACATCAGCCCTTTCTGTGAAGTACTCGTTCAGCAATTTCTCTTTCAAGAATTTATCACAACTGGCTTCCATCAATTATGATTTGGTTGTGAAGAGCAGTCAAAACTCACCAGATGTATCAAAACCATCCATTCCTTGA | 3861 | 41.57 | MSESSPSDHNPSPSAAKLRKIPPIPIRRDSIPNAGDSDSYHENDAPEDQPLQPDDSSIIMASSLGLNHIRTRSAPLPLRTSAVGTPSNLGDNSRNNVVSSETESEPKVSSIEQGKKVLWSQSKSFRYPTSLNHDLEGNHVAFGKEIQSPRFRAILRVTSGRRRRTPDIKSFSHELNSKGVRPFPLWKPRAFGHLEEIMVAIRAKFDRLKDDVNYELGIFAGDLVDKLEKTDQSQPELKEGLEDLLVVARKCATMSPTEFWTKGEGIVQNLDDRRQELSLGILKQTHTRLLFILTRCTRLIQFRKESGYEDEHILGLHQLSDLGIYPEKLRQLEQLDFSDPLIVKEAIEQQLKLVGKDQASRLVKQDLGQSFSTSAGNVELDSSLSVDSSTSMYRMASWKKLPSAAEKNRKDSDSTGTPSKDKLELLHVHEAKTGSNNQLDTPSSHIAHSEAPPKEQKVSWGIWGFHQNATFENLMICRICEVEIPTIHVEEHSRICTIADRCDLKGLTVNERLERVATALEKILESWTPKSTPRSCDTSCGNFDTVKVSTSSMQEEVFELSSKGINLSSRNSEDLLDSLPVTGNSSFMESQDIFPDSSDNRPFIFTPDHSTKSTSAGTLTPRSPLLTPRSSQIELLLHGRRAISELENYQQIYKLLDIVRSIANVNNSGYGALESMLDRLEDLKYAIQDRKVDALVVETFGRRIEKLLQEKYVHLCGQIEDDKVDSSHGMVDEESSVEDDTVRSLRASPVNTSKDRTSIEDFEIIKPISRGAYGRVFLARKRATGDLFAIKVLKKADMIRKNAVESILAERNILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDIYSLLRNLGCLDEDMARIYIAEIVLALEYLHSLNVIHRDLKPDNLLIGQDGHIKASNSAYVMDLKLSSPEFEIRDPCGTFLEALWQILRILITWVRTLKEAVQLGEDLSGCFILNFIGIIGGLVHEHNKILLDAHVSSRIYLTFHLNKEKPPNSSLTAAILKTEVTKLTDFGLSKIGLINSTDDFSGPSISGTSSLGDNGPTPQSLSKREHRQKHSVVGTPDYLAPEILLGMGHGVTADWWSVGVILFEMLVGIPPFNAENPQQIFDNIINRDIPWPKVPDEMSYEAHDLIDKLLTENSVQRLGATGAREVKEHPFFKDINWETLARQKAMFIPSAEPQDTSYFMSRYIWNPEDEDFNGGSDFDDHDLTDTCSSSSFSNLQDEDGDECGSLADFCTSALSVKYSFSNFSFKNLSQLASINYDLVVKSSQNSPDVSKPSIP | 1286 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 5514895 | 5525602 | + | ClCG01G005190.2 | Cla01g00509 | 264098 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g00509 | 1286 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1013 | 1181 | - | - | |
Cla01g00509 | 1286 | ProSiteProfiles | Protein kinase domain profile. | 762 | 1163 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla01g00509 | 1286 | Gene3D | Phosphorylase Kinase; domain 1 | 760 | 845 | - | - | |
Cla01g00509 | 1286 | PANTHER | SERINE/THREONINE PROTEIN KINASE IRE-RELATED | 1012 | 1286 | - | - | |
Cla01g00509 | 1286 | SUPERFAMILY | Protein kinase-like (PK-like) | 759 | 1193 | IPR011009 | - | |
Cla01g00509 | 1286 | MobiDBLite | consensus disorder prediction | 77 | 109 | - | - | |
Cla01g00509 | 1286 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
Cla01g00509 | 1286 | MobiDBLite | consensus disorder prediction | 433 | 452 | - | - | |
Cla01g00509 | 1286 | MobiDBLite | consensus disorder prediction | 78 | 107 | - | - | |
Cla01g00509 | 1286 | MobiDBLite | consensus disorder prediction | 1036 | 1063 | - | - | |
Cla01g00509 | 1286 | SMART | serkin_6 | 762 | 1163 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla01g00509 | 1286 | MobiDBLite | consensus disorder prediction | 1036 | 1050 | - | - | |
Cla01g00509 | 1286 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 1164 | 1266 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Cla01g00509 | 1286 | PANTHER | SERINE/THREONINE PROTEIN KINASE IRE-RELATED | 13 | 903 | - | - | |
Cla01g00509 | 1286 | Pfam | Protein kinase domain | 762 | 901 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla01g00509 | 1286 | Pfam | Protein kinase domain | 1009 | 1163 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla01g00509 | 1286 | Gene3D | Transferase(Phosphotransferase) domain 1 | 846 | 902 | - | - | |
Cla01g00509 | 1286 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 13 | 903 | - | - | |
Cla01g00509 | 1286 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 881 | 893 | IPR008271 | GO:0004672|GO:0006468 | |
Cla01g00509 | 1286 | CDD | STKc_MAST_like | 768 | 1168 | - | - | |
Cla01g00509 | 1286 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 1012 | 1286 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g00509 | Cla-Chr1:5514895 | Cla04g01253 | Cla-Chr4:27661222 | 4.23E-179 | dispersed | |
Cla01g00509 | Cla-Chr1:5514895 | Cla03g01479 | Cla-Chr3:30288766 | 2.78E-30 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80242 | PF00069 | Pkinase | 6.50E-22 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g00509 | - | - | csv:101210442 | 1558.5 |