Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00509 ATGTCCGAATCATCTCCCTCTGATCATAATCCCTCTCCCTCTGCTGCCAAGCTCCGCAAGATCCCTCCCATTCCCATTCGGCGCGATTCCATACCCAATGCCGGAGACTCCGATTCCTATCATGAAAACGATGCTCCCGAGGATCAACCTCTTCAACCTGACGATTCCTCCATCATTATGGCCTCCTCTCTTGGGTTGAATCACATTCGTACGCGTTCTGCTCCTTTGCCGTTACGAACCTCTGCTGTTGGCACGCCCTCCAATTTGGGAGATAATTCTAGAAATAATGTTGTCTCTAGTGAGACCGAGTCCGAGCCAAAAGTTTCCTCCATTGAACAAGGAAAAAAAGTTCTTTGGAGTCAATCGAAATCGTTCAGATATCCTACATCTCTGAATCATGATCTTGAGGGCAATCATGTAGCGTTTGGAAAGGAAATTCAGTCTCCACGATTCCGTGCCATACTGCGTGTAACTAGTGGAAGAAGGAGGAGAACCCCGGATATCAAAAGCTTCTCTCACGAGCTCAATTCAAAGGGAGTTCGCCCTTTTCCACTTTGGAAACCTCGGGCATTTGGGCATTTGGAAGAGATCATGGTGGCTATCAGAGCAAAATTTGACAGATTGAAGGATGATGTGAATTACGAATTGGGCATTTTTGCTGGAGATCTCGTAGATAAACTTGAAAAGACAGACCAGTCTCAGCCTGAACTAAAAGAGGGTTTGGAGGACTTATTGGTGGTTGCTCGGAAATGTGCGACAATGTCGCCTACTGAATTCTGGACGAAAGGTGAAGGGATTGTCCAAAATCTAGACGATCGGCGGCAGGAGCTGTCGTTAGGGATTCTTAAGCAAACCCATACCCGCCTTCTCTTCATCTTGACACGATGTACTCGGCTTATTCAGTTCAGAAAGGAGAGTGGTTATGAAGATGAACACATTTTGGGTCTTCATCAACTTAGTGATCTAGGAATTTATCCAGAGAAACTTAGGCAGCTCGAACAACTTGACTTTAGTGATCCATTGATTGTGAAAGAAGCAATTGAGCAGCAGCTAAAGTTGGTTGGTAAGGATCAAGCCAGTCGACTGGTGAAGCAAGATTTAGGCCAAAGTTTTAGTACTAGTGCTGGAAATGTCGAGCTGGACTCTTCCTTAAGTGTTGATTCATCTACAAGCATGTATAGGATGGCATCCTGGAAAAAGCTACCATCAGCAGCTGAGAAGAACCGGAAAGACTCTGACTCCACTGGAACACCTTCCAAGGATAAACTTGAACTGTTGCATGTACATGAAGCTAAGACCGGGAGCAATAACCAATTAGATACCCCATCTAGTCATATTGCGCATTCAGAAGCACCTCCTAAAGAACAAAAAGTATCTTGGGGAATATGGGGTTTTCATCAAAATGCCACTTTTGAGAATTTGATGATTTGTCGGATTTGTGAGGTTGAAATTCCGACCATTCATGTTGAGGAGCATTCTCGAATATGTACAATTGCCGATAGGTGTGATTTGAAAGGTTTAACTGTGAATGAGCGCCTTGAACGGGTTGCTACAGCTCTTGAAAAGATACTAGAGTCTTGGACGCCTAAAAGTACACCAAGAAGTTGTGATACTTCATGTGGAAATTTTGATACCGTCAAGGTTTCTACATCAAGTATGCAAGAAGAGGTTTTTGAGCTGTCATCTAAAGGAATCAATTTGTCAAGTCGAAACTCTGAAGATCTGCTTGATTCCCTCCCTGTTACTGGCAACTCCTCCTTCATGGAAAGTCAGGATATTTTTCCTGATTCATCAGACAATCGACCATTTATTTTCACACCAGATCACAGTACAAAATCAACGTCAGCTGGAACTCTAACACCAAGATCACCTCTTTTAACACCTAGATCCAGCCAGATTGAATTGTTGTTGCATGGACGAAGAGCAATATCTGAACTTGAAAATTATCAGCAGATTTACAAATTATTGGATATTGTTCGTTCCATTGCAAATGTTAACAACTCTGGATACGGTGCATTGGAGTCCATGCTTGATCGATTAGAGGACCTTAAATATGCAATCCAGGACAGGAAGGTGGATGCCCTTGTTGTGGAGACTTTTGGAAGGCGCATAGAGAAGCTCTTGCAGGAAAAATATGTGCATCTCTGTGGGCAAATTGAAGATGATAAAGTAGACTCTTCACATGGCATGGTTGATGAAGAGAGTTCAGTGGAAGATGATACTGTTCGTAGTTTGCGTGCAAGTCCTGTTAATACATCAAAAGATCGAACATCTATTGAAGATTTTGAAATAATTAAACCAATTAGTAGAGGGGCATATGGCCGAGTTTTTCTTGCCAGAAAAAGAGCAACTGGAGACTTGTTTGCAATAAAGGTTTTAAAGAAGGCTGATATGATTCGCAAGAATGCAGTTGAAAGTATTTTGGCTGAACGTAATATCCTTATCTCAGTTCGCAACCCTTTTGTGGTCCGCTTTTTCTACTCTTTCACATGTAGGGAAAATCTGTATCTGGTCATGGAATACTTAAATGGAGGTGATATTTATTCCTTGCTGAGAAACCTAGGGTGCTTAGATGAAGATATGGCTCGTATTTATATCGCTGAAATTGTTCTTGCTTTGGAGTATTTGCACTCCTTAAATGTGATTCACAGAGACTTAAAGCCAGATAACTTATTGATTGGTCAAGATGGTCACATTAAGGCAAGTAATTCTGCTTATGTTATGGACTTAAAATTGTCCTCTCCAGAATTTGAAATACGAGATCCTTGTGGTACTTTCTTAGAAGCTTTATGGCAGATTTTAAGGATTCTAATAACATGGGTTAGAACCTTGAAGGAAGCTGTCCAACTTGGAGAAGATTTAAGTGGCTGCTTTATTCTAAATTTTATTGGAATCATTGGGGGCCTTGTCCACGAGCATAACAAGATCCTCTTAGATGCCCATGTTTCCTCTAGAATCTATCTTACCTTCCATTTGAATAAGGAAAAACCTCCCAATAGCTCTCTCACTGCAGCCATTTTGAAGACAGAGGTTACAAAGTTGACAGATTTTGGGCTCTCCAAGATTGGTCTTATCAATAGTACAGATGATTTCTCAGGTCCATCAATCAGTGGAACTTCTTCACTTGGAGACAATGGACCAACACCTCAATCTTTGTCAAAAAGAGAACACAGACAAAAGCATTCAGTGGTTGGTACTCCAGATTATTTGGCTCCTGAGATACTTCTGGGCATGGGACATGGTGTAACTGCGGATTGGTGGTCTGTTGGAGTAATTCTTTTTGAGATGCTTGTAGGAATACCGCCGTTCAATGCAGAAAATCCACAGCAAATTTTTGATAATATCATTAACAGAGACATACCGTGGCCCAAGGTGCCTGACGAGATGAGTTATGAAGCCCATGATTTGATTGACAAATTGTTGACTGAAAATTCAGTTCAAAGACTGGGAGCTACTGGAGCCAGAGAGGTGAAGGAACATCCTTTCTTCAAAGATATTAACTGGGAAACACTTGCAAGGCAGAAGGCCATGTTTATACCATCAGCAGAGCCACAGGATACAAGTTATTTCATGAGCCGTTATATATGGAATCCAGAAGATGAGGATTTTAATGGTGGAAGTGACTTTGATGATCATGATTTGACTGATACTTGCAGCAGTAGTTCATTTAGTAACCTTCAAGATGAAGACGGAGACGAATGTGGTAGTTTGGCTGACTTCTGTACATCAGCCCTTTCTGTGAAGTACTCGTTCAGCAATTTCTCTTTCAAGAATTTATCACAACTGGCTTCCATCAATTATGATTTGGTTGTGAAGAGCAGTCAAAACTCACCAGATGTATCAAAACCATCCATTCCTTGA 3861 41.57 MSESSPSDHNPSPSAAKLRKIPPIPIRRDSIPNAGDSDSYHENDAPEDQPLQPDDSSIIMASSLGLNHIRTRSAPLPLRTSAVGTPSNLGDNSRNNVVSSETESEPKVSSIEQGKKVLWSQSKSFRYPTSLNHDLEGNHVAFGKEIQSPRFRAILRVTSGRRRRTPDIKSFSHELNSKGVRPFPLWKPRAFGHLEEIMVAIRAKFDRLKDDVNYELGIFAGDLVDKLEKTDQSQPELKEGLEDLLVVARKCATMSPTEFWTKGEGIVQNLDDRRQELSLGILKQTHTRLLFILTRCTRLIQFRKESGYEDEHILGLHQLSDLGIYPEKLRQLEQLDFSDPLIVKEAIEQQLKLVGKDQASRLVKQDLGQSFSTSAGNVELDSSLSVDSSTSMYRMASWKKLPSAAEKNRKDSDSTGTPSKDKLELLHVHEAKTGSNNQLDTPSSHIAHSEAPPKEQKVSWGIWGFHQNATFENLMICRICEVEIPTIHVEEHSRICTIADRCDLKGLTVNERLERVATALEKILESWTPKSTPRSCDTSCGNFDTVKVSTSSMQEEVFELSSKGINLSSRNSEDLLDSLPVTGNSSFMESQDIFPDSSDNRPFIFTPDHSTKSTSAGTLTPRSPLLTPRSSQIELLLHGRRAISELENYQQIYKLLDIVRSIANVNNSGYGALESMLDRLEDLKYAIQDRKVDALVVETFGRRIEKLLQEKYVHLCGQIEDDKVDSSHGMVDEESSVEDDTVRSLRASPVNTSKDRTSIEDFEIIKPISRGAYGRVFLARKRATGDLFAIKVLKKADMIRKNAVESILAERNILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDIYSLLRNLGCLDEDMARIYIAEIVLALEYLHSLNVIHRDLKPDNLLIGQDGHIKASNSAYVMDLKLSSPEFEIRDPCGTFLEALWQILRILITWVRTLKEAVQLGEDLSGCFILNFIGIIGGLVHEHNKILLDAHVSSRIYLTFHLNKEKPPNSSLTAAILKTEVTKLTDFGLSKIGLINSTDDFSGPSISGTSSLGDNGPTPQSLSKREHRQKHSVVGTPDYLAPEILLGMGHGVTADWWSVGVILFEMLVGIPPFNAENPQQIFDNIINRDIPWPKVPDEMSYEAHDLIDKLLTENSVQRLGATGAREVKEHPFFKDINWETLARQKAMFIPSAEPQDTSYFMSRYIWNPEDEDFNGGSDFDDHDLTDTCSSSSFSNLQDEDGDECGSLADFCTSALSVKYSFSNFSFKNLSQLASINYDLVVKSSQNSPDVSKPSIP 1286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5514895 5525602 + ClCG01G005190.2 Cla01g00509 264098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00509 1286 Gene3D Transferase(Phosphotransferase) domain 1 1013 1181 - -
Cla01g00509 1286 ProSiteProfiles Protein kinase domain profile. 762 1163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00509 1286 Gene3D Phosphorylase Kinase; domain 1 760 845 - -
Cla01g00509 1286 PANTHER SERINE/THREONINE PROTEIN KINASE IRE-RELATED 1012 1286 - -
Cla01g00509 1286 SUPERFAMILY Protein kinase-like (PK-like) 759 1193 IPR011009 -
Cla01g00509 1286 MobiDBLite consensus disorder prediction 77 109 - -
Cla01g00509 1286 MobiDBLite consensus disorder prediction 1 55 - -
Cla01g00509 1286 MobiDBLite consensus disorder prediction 433 452 - -
Cla01g00509 1286 MobiDBLite consensus disorder prediction 78 107 - -
Cla01g00509 1286 MobiDBLite consensus disorder prediction 1036 1063 - -
Cla01g00509 1286 SMART serkin_6 762 1163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00509 1286 MobiDBLite consensus disorder prediction 1036 1050 - -
Cla01g00509 1286 ProSiteProfiles AGC-kinase C-terminal domain profile. 1164 1266 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cla01g00509 1286 PANTHER SERINE/THREONINE PROTEIN KINASE IRE-RELATED 13 903 - -
Cla01g00509 1286 Pfam Protein kinase domain 762 901 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00509 1286 Pfam Protein kinase domain 1009 1163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00509 1286 Gene3D Transferase(Phosphotransferase) domain 1 846 902 - -
Cla01g00509 1286 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 903 - -
Cla01g00509 1286 ProSitePatterns Serine/Threonine protein kinases active-site signature. 881 893 IPR008271 GO:0004672|GO:0006468
Cla01g00509 1286 CDD STKc_MAST_like 768 1168 - -
Cla01g00509 1286 PANTHER SERINE/THREONINE-PROTEIN KINASE 1012 1286 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00509 Cla-Chr1:5514895 Cla04g01253 Cla-Chr4:27661222 4.23E-179 dispersed
Cla01g00509 Cla-Chr1:5514895 Cla03g01479 Cla-Chr3:30288766 2.78E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80242 PF00069 Pkinase 6.50E-22 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00509 - - csv:101210442 1558.5