Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00524 ATGGTTCGAGGAAAAGTAGAGATGAAACGAATTGAAAATTCGACAAGTCGTCAAGTGACATTCTCAAAGAGACGAAATGGGCTTCTGAAAAAAGCTTATGAATTGTCTGTTCTTTGTGATGCTGAAGTTTCTGTCATAATTTTCTCCCAAAAAGGAAGGCTCTATGAGTTCTCAAGCTCCGACATGCAAAAGACAATTGAACGGTACCGTAGCTATGGGAAAGATGGACAAACCAACCCTTTTCGATCAGAAGGATATATGCAGCAACTGAAGCAAGAAGCTGACATGACAGCAAAGAAAATCGAGCAACTTGAAAAATCACAAGAGAAGCTTTTGGGACGTGGGTTGGATTCTTGTTCCTTTGAGGAACTTCGAGGGATTGAAAGACAGTTGGTACATAGCTTAACCCGTATTAGAGAAACCAAGGCTCAGCTATTCAAGGAGCAGAAAGAGAAGCTGATTGAAAAGGGGAAACTCCTTTTAGAAGAAAATCTAAAGTTATCTGCAAAGTGTGGTACTAAGCCGTGGCAAGAAGGTGGTTTTGAAGGAGAGGGAGGCATAATGAGCAATTTATGCAGCCAAAGTAGCCAAGGTCCTGACATGCAGACTGAATTGTTCATTGGATTGCCTTGCTCATAA 639 41.31 MVRGKVEMKRIENSTSRQVTFSKRRNGLLKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSDMQKTIERYRSYGKDGQTNPFRSEGYMQQLKQEADMTAKKIEQLEKSQEKLLGRGLDSCSFEELRGIERQLVHSLTRIRETKAQLFKEQKEKLIEKGKLLLEENLKLSAKCGTKPWQEGGFEGEGGIMSNLCSQSSQGPDMQTELFIGLPCS 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5706644 5721569 - ClCG01G005350.2 Cla01g00524 264113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00524 212 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Cla01g00524 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cla01g00524 212 PANTHER MADS BOX PROTEIN 1 209 - -
Cla01g00524 212 Pfam K-box region 88 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla01g00524 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cla01g00524 212 Gene3D - 13 107 IPR036879 GO:0003677|GO:0046983
Cla01g00524 212 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
Cla01g00524 212 Coils Coil 87 107 - -
Cla01g00524 212 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla01g00524 212 PANTHER MADS-BOX PROTEIN SOC1 1 209 - -
Cla01g00524 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cla01g00524 212 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cla01g00524 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cla01g00524 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cla01g00524 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g00524 Cla05g00836 CCT
Cla01g00524 Cla05g00836 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00524 Cla-Chr1:5706644 Cla05g00211 Cla-Chr5:1884372 1.67E-63 dispersed
Cla01g00524 Cla-Chr1:5706644 Cla05g00836 Cla-Chr5:8269944 3.18E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60368 PF01486 K-box 2.80E-20 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00524 - - csv:101212323 344.739