Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g00527 | ATGTCTTCTACTCCAATTCTCTCTCTCCCTCTCACTCTTAAGCCTTCTCATTTCCCCAATCACACTCTCAAACTTCCCAATTCCTCTCTCTCCCTGCTCCGCCCATCAACTTCCTTCGCGCCATTTTCGACTCCACCACCTCTCAAGCCCTTTAATGGTTCAATCAAAACTAGTAGCAATTCTACTTTCGCCTATGTCACGGGCCCTGCGTCGGACCCTAATGTCAGCGAGTCTGACCCCAAGGTGGACGACGCCTCCGATTCTCAGGTTCGGGTTGTTGGGGTCTTGAATTGGGGGCTCTTCTGGAGGCTTTTGACCAAGCATAAGCTACGGCTTCTAGTTTCTTTGCTTACTCTTGTTTGCTGCAGTACTTGTACTCTTTCAATGCCCTTTTTCTCTGGTAGATTTTTTGAGGTACTTATAGGTGCGAAACCTGGGTCTCTGTGGAGGCTTCTGAGTACGGTTGGAATTTTATATGCATTGGAGCCAATATTAACGGTTTTATTTGTCACAAACATGAATTTCATGTGGGAGAAGGTTATGTCAAGATTAAGAGCCCAGATTTTTGGAAGGTTGCTGATTCAGAAGGTGGAATTCTTTGACAGATACAAGGTTGGTGAAATTACCGGATTGTTAACTTCTGATTTGGGATCTCTTAAGGATGTGGTGAGTGAGAATGTTTCAAGGGACCGTGGATTCAGAGCGTTCTCAGAGGCAAGCAACTCTTCACCAAGTACAAGTGATTGGAACAATATGTATATTATTTGCTTTGTCCCCCCAGCTTGCACCTATTCTTGGCCTGCTGATGCTCACAGTATCTGTTTCAGTAGGTATAGGTTAAGGTCAGATGGCTTTAACAAAGGCAGCCAACTGACTACCTCTGTATACAAGCGATCAACTATTCCTGTATTTAAAGCACATGGATTAGCCCAAGCATCCATGGCTGATTGTGCAACTGAGACATTCTCTGCAATTCGTACTGTGAGATCCTTTGGCGGTGAAAAGCGACAAATGTTCAATTTTGGTCGTCAGGTTATTGCATATGAGGGTAGTGGCATATCACTTGGGACTTATAAATCTCTGAATGAATCTTTAACTAGAGTTGCTGTTTATGTTTCGCTTATGACATTATATTGGCTTGGAGGAGACAAAGTGAAAGCGGGTGAACTTTCTGTTGGAACCATGGCTTCTTTTATTGGATATACTTTCACGTTAACATTTGCTGTTCAAGGATTGGTAAATTCATTTGGAGATCTCCGCCGAACTTTTGCTGCTGTTGAAAGAATTAATTCTGTTTTAAATGAAGAGGTTGATGAAGCCCTTGCATATGGGTTAGAAAAAGAGATGCAACAAAAAGAATTTAGATATAAGTTGCTATTCTCCAGAGATACTGATGAAAGTCCAGTGAAAACACAGTACATGGCAGCCCTAAAATCTTCTAGCAACGTTATCAATCTTGCTTGGTCTGGTGATATTTGTCTTGAAGATGTGTGCTTTTCTTACCCTTTGAGACCGGACGTTGACATTCTTAGCGGTTTGAATTTAACCCTTAAATGTGGAACCATAACGGCGCTAGTGGGCCCTAGTGGAGCAGGAAAGAGTACAATAGTGCAGCTATTGGCACGTTTTTATGAGCCAAAGAAAGGGCAGATAAAAGTTTCTGGTGAAGATATTCGAGCATTTGACAAGAGAGAATGGGCTCGGGCTGTTTCAATAGTGAATCAAGAACCCGTTCTTTTTTCGGTGTCTGTTGGAGAGAATATTGCATATGGACTTCCAGATGATAACGTAACAAAGGATGAAGTTATAAAGGCAGCCAAAGCTGCAAACGCTCATGACTTCATTATTTCACTTCCTCAGGGCTATGACACACCAGTTGGTGAACGCGGAGGCCTTCTCAGTGGTGGCCAGCGACAGAGAATTACAATTGCGAGAGCTTTGCTTAAGAATGCTCCAATCCTTATACTTGATGAGGCGACCAGTGCCCTAGATGCAGTTAGTGAGCGACTAGTCCAGGACGCGCTGAACCATCTAATGAAGGGAAGGACAACATTGGTGATTGCACACCGATTGAGTACCGTTCAAAATGCCCATCAAATTGCATTTTGTTCTGATGGAAAAATTGTAGAGCTGGGAACTCATTTGGAACTACTGGCTCGGAAAGGTCGGTATGCTTCATTAGTTAGCACACAAAGGCTGGCATTTGAGTAA | 2211 | 43.15 | MSSTPILSLPLTLKPSHFPNHTLKLPNSSLSLLRPSTSFAPFSTPPPLKPFNGSIKTSSNSTFAYVTGPASDPNVSESDPKVDDASDSQVRVVGVLNWGLFWRLLTKHKLRLLVSLLTLVCCSTCTLSMPFFSGRFFEVLIGAKPGSLWRLLSTVGILYALEPILTVLFVTNMNFMWEKVMSRLRAQIFGRLLIQKVEFFDRYKVGEITGLLTSDLGSLKDVVSENVSRDRGFRAFSEASNSSPSTSDWNNMYIICFVPPACTYSWPADAHSICFSRYRLRSDGFNKGSQLTTSVYKRSTIPVFKAHGLAQASMADCATETFSAIRTVRSFGGEKRQMFNFGRQVIAYEGSGISLGTYKSLNESLTRVAVYVSLMTLYWLGGDKVKAGELSVGTMASFIGYTFTLTFAVQGLVNSFGDLRRTFAAVERINSVLNEEVDEALAYGLEKEMQQKEFRYKLLFSRDTDESPVKTQYMAALKSSSNVINLAWSGDICLEDVCFSYPLRPDVDILSGLNLTLKCGTITALVGPSGAGKSTIVQLLARFYEPKKGQIKVSGEDIRAFDKREWARAVSIVNQEPVLFSVSVGENIAYGLPDDNVTKDEVIKAAKAANAHDFIISLPQGYDTPVGERGGLLSGGQRQRITIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIAFCSDGKIVELGTHLELLARKGRYASLVSTQRLAFE | 736 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 5757865 | 5765326 | + | ClCG01G005380.1 | Cla01g00527 | 264116 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g00527 | 736 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY B | 293 | 734 | IPR039421 | - | |
Cla01g00527 | 736 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY B | 57 | 239 | IPR039421 | - | |
Cla01g00527 | 736 | SMART | AAA_5 | 519 | 713 | IPR003593 | - | |
Cla01g00527 | 736 | Gene3D | ABC transporter type 1, transmembrane domain | 94 | 229 | IPR036640 | GO:0005524|GO:0016021 | |
Cla01g00527 | 736 | CDD | ABC_MTABC3_MDL1_MDL2 | 492 | 731 | - | - | |
Cla01g00527 | 736 | Pfam | ABC transporter transmembrane region | 294 | 408 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Cla01g00527 | 736 | Pfam | ABC transporter transmembrane region | 113 | 227 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Cla01g00527 | 736 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 492 | 730 | IPR003439 | GO:0005524 | |
Cla01g00527 | 736 | Gene3D | ABC transporter type 1, transmembrane domain | 289 | 479 | IPR036640 | GO:0005524|GO:0016021 | |
Cla01g00527 | 736 | SUPERFAMILY | ABC transporter transmembrane region | 293 | 438 | IPR036640 | GO:0005524|GO:0016021 | |
Cla01g00527 | 736 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 113 | 421 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Cla01g00527 | 736 | CDD | ABC_6TM_TAP_ABCB8_10_like | 120 | 429 | - | - | |
Cla01g00527 | 736 | Gene3D | - | 484 | 734 | IPR027417 | - | |
Cla01g00527 | 736 | PANTHER | ABC TRANSPORTER B FAMILY MEMBER 28 | 293 | 734 | - | - | |
Cla01g00527 | 736 | PANTHER | ABC TRANSPORTER B FAMILY MEMBER 28 | 57 | 239 | - | - | |
Cla01g00527 | 736 | Pfam | ABC transporter | 510 | 661 | IPR003439 | GO:0005524 | |
Cla01g00527 | 736 | SUPERFAMILY | ABC transporter transmembrane region | 101 | 227 | IPR036640 | GO:0005524|GO:0016021 | |
Cla01g00527 | 736 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 483 | 731 | IPR027417 | - | |
Cla01g00527 | 736 | ProSitePatterns | ABC transporters family signature. | 633 | 647 | IPR017871 | GO:0005524 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g00527 | Cla-Chr1:5757865 | Cla05g01535 | Cla-Chr5:25551563 | 4.61E-69 | dispersed | |
Cla01g00527 | Cla-Chr1:5757865 | Cla04g01146 | Cla-Chr4:26663833 | 2.33E-06 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g00527 | K05657 | - | csv:101211598 | 1166.37 |