Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00527 ATGTCTTCTACTCCAATTCTCTCTCTCCCTCTCACTCTTAAGCCTTCTCATTTCCCCAATCACACTCTCAAACTTCCCAATTCCTCTCTCTCCCTGCTCCGCCCATCAACTTCCTTCGCGCCATTTTCGACTCCACCACCTCTCAAGCCCTTTAATGGTTCAATCAAAACTAGTAGCAATTCTACTTTCGCCTATGTCACGGGCCCTGCGTCGGACCCTAATGTCAGCGAGTCTGACCCCAAGGTGGACGACGCCTCCGATTCTCAGGTTCGGGTTGTTGGGGTCTTGAATTGGGGGCTCTTCTGGAGGCTTTTGACCAAGCATAAGCTACGGCTTCTAGTTTCTTTGCTTACTCTTGTTTGCTGCAGTACTTGTACTCTTTCAATGCCCTTTTTCTCTGGTAGATTTTTTGAGGTACTTATAGGTGCGAAACCTGGGTCTCTGTGGAGGCTTCTGAGTACGGTTGGAATTTTATATGCATTGGAGCCAATATTAACGGTTTTATTTGTCACAAACATGAATTTCATGTGGGAGAAGGTTATGTCAAGATTAAGAGCCCAGATTTTTGGAAGGTTGCTGATTCAGAAGGTGGAATTCTTTGACAGATACAAGGTTGGTGAAATTACCGGATTGTTAACTTCTGATTTGGGATCTCTTAAGGATGTGGTGAGTGAGAATGTTTCAAGGGACCGTGGATTCAGAGCGTTCTCAGAGGCAAGCAACTCTTCACCAAGTACAAGTGATTGGAACAATATGTATATTATTTGCTTTGTCCCCCCAGCTTGCACCTATTCTTGGCCTGCTGATGCTCACAGTATCTGTTTCAGTAGGTATAGGTTAAGGTCAGATGGCTTTAACAAAGGCAGCCAACTGACTACCTCTGTATACAAGCGATCAACTATTCCTGTATTTAAAGCACATGGATTAGCCCAAGCATCCATGGCTGATTGTGCAACTGAGACATTCTCTGCAATTCGTACTGTGAGATCCTTTGGCGGTGAAAAGCGACAAATGTTCAATTTTGGTCGTCAGGTTATTGCATATGAGGGTAGTGGCATATCACTTGGGACTTATAAATCTCTGAATGAATCTTTAACTAGAGTTGCTGTTTATGTTTCGCTTATGACATTATATTGGCTTGGAGGAGACAAAGTGAAAGCGGGTGAACTTTCTGTTGGAACCATGGCTTCTTTTATTGGATATACTTTCACGTTAACATTTGCTGTTCAAGGATTGGTAAATTCATTTGGAGATCTCCGCCGAACTTTTGCTGCTGTTGAAAGAATTAATTCTGTTTTAAATGAAGAGGTTGATGAAGCCCTTGCATATGGGTTAGAAAAAGAGATGCAACAAAAAGAATTTAGATATAAGTTGCTATTCTCCAGAGATACTGATGAAAGTCCAGTGAAAACACAGTACATGGCAGCCCTAAAATCTTCTAGCAACGTTATCAATCTTGCTTGGTCTGGTGATATTTGTCTTGAAGATGTGTGCTTTTCTTACCCTTTGAGACCGGACGTTGACATTCTTAGCGGTTTGAATTTAACCCTTAAATGTGGAACCATAACGGCGCTAGTGGGCCCTAGTGGAGCAGGAAAGAGTACAATAGTGCAGCTATTGGCACGTTTTTATGAGCCAAAGAAAGGGCAGATAAAAGTTTCTGGTGAAGATATTCGAGCATTTGACAAGAGAGAATGGGCTCGGGCTGTTTCAATAGTGAATCAAGAACCCGTTCTTTTTTCGGTGTCTGTTGGAGAGAATATTGCATATGGACTTCCAGATGATAACGTAACAAAGGATGAAGTTATAAAGGCAGCCAAAGCTGCAAACGCTCATGACTTCATTATTTCACTTCCTCAGGGCTATGACACACCAGTTGGTGAACGCGGAGGCCTTCTCAGTGGTGGCCAGCGACAGAGAATTACAATTGCGAGAGCTTTGCTTAAGAATGCTCCAATCCTTATACTTGATGAGGCGACCAGTGCCCTAGATGCAGTTAGTGAGCGACTAGTCCAGGACGCGCTGAACCATCTAATGAAGGGAAGGACAACATTGGTGATTGCACACCGATTGAGTACCGTTCAAAATGCCCATCAAATTGCATTTTGTTCTGATGGAAAAATTGTAGAGCTGGGAACTCATTTGGAACTACTGGCTCGGAAAGGTCGGTATGCTTCATTAGTTAGCACACAAAGGCTGGCATTTGAGTAA 2211 43.15 MSSTPILSLPLTLKPSHFPNHTLKLPNSSLSLLRPSTSFAPFSTPPPLKPFNGSIKTSSNSTFAYVTGPASDPNVSESDPKVDDASDSQVRVVGVLNWGLFWRLLTKHKLRLLVSLLTLVCCSTCTLSMPFFSGRFFEVLIGAKPGSLWRLLSTVGILYALEPILTVLFVTNMNFMWEKVMSRLRAQIFGRLLIQKVEFFDRYKVGEITGLLTSDLGSLKDVVSENVSRDRGFRAFSEASNSSPSTSDWNNMYIICFVPPACTYSWPADAHSICFSRYRLRSDGFNKGSQLTTSVYKRSTIPVFKAHGLAQASMADCATETFSAIRTVRSFGGEKRQMFNFGRQVIAYEGSGISLGTYKSLNESLTRVAVYVSLMTLYWLGGDKVKAGELSVGTMASFIGYTFTLTFAVQGLVNSFGDLRRTFAAVERINSVLNEEVDEALAYGLEKEMQQKEFRYKLLFSRDTDESPVKTQYMAALKSSSNVINLAWSGDICLEDVCFSYPLRPDVDILSGLNLTLKCGTITALVGPSGAGKSTIVQLLARFYEPKKGQIKVSGEDIRAFDKREWARAVSIVNQEPVLFSVSVGENIAYGLPDDNVTKDEVIKAAKAANAHDFIISLPQGYDTPVGERGGLLSGGQRQRITIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIAFCSDGKIVELGTHLELLARKGRYASLVSTQRLAFE 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5757865 5765326 + ClCG01G005380.1 Cla01g00527 264116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00527 736 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 293 734 IPR039421 -
Cla01g00527 736 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 57 239 IPR039421 -
Cla01g00527 736 SMART AAA_5 519 713 IPR003593 -
Cla01g00527 736 Gene3D ABC transporter type 1, transmembrane domain 94 229 IPR036640 GO:0005524|GO:0016021
Cla01g00527 736 CDD ABC_MTABC3_MDL1_MDL2 492 731 - -
Cla01g00527 736 Pfam ABC transporter transmembrane region 294 408 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cla01g00527 736 Pfam ABC transporter transmembrane region 113 227 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cla01g00527 736 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 492 730 IPR003439 GO:0005524
Cla01g00527 736 Gene3D ABC transporter type 1, transmembrane domain 289 479 IPR036640 GO:0005524|GO:0016021
Cla01g00527 736 SUPERFAMILY ABC transporter transmembrane region 293 438 IPR036640 GO:0005524|GO:0016021
Cla01g00527 736 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 113 421 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cla01g00527 736 CDD ABC_6TM_TAP_ABCB8_10_like 120 429 - -
Cla01g00527 736 Gene3D - 484 734 IPR027417 -
Cla01g00527 736 PANTHER ABC TRANSPORTER B FAMILY MEMBER 28 293 734 - -
Cla01g00527 736 PANTHER ABC TRANSPORTER B FAMILY MEMBER 28 57 239 - -
Cla01g00527 736 Pfam ABC transporter 510 661 IPR003439 GO:0005524
Cla01g00527 736 SUPERFAMILY ABC transporter transmembrane region 101 227 IPR036640 GO:0005524|GO:0016021
Cla01g00527 736 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 483 731 IPR027417 -
Cla01g00527 736 ProSitePatterns ABC transporters family signature. 633 647 IPR017871 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00527 Cla-Chr1:5757865 Cla05g01535 Cla-Chr5:25551563 4.61E-69 dispersed
Cla01g00527 Cla-Chr1:5757865 Cla04g01146 Cla-Chr4:26663833 2.33E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00527 K05657 - csv:101211598 1166.37