Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00540 ATGGGGAATTCATTTGGGTGTTCGGCGTCAGGAGAGAGATTGGTATCGGCTGCGAGAGATGGCGACTTGGTTGAGGCTAAAATGCTTTTAGATTGCAACCCATGTCTCGCTAAATACTCCACTTTCGGCGGCCTTAATTCCCCTCTCCATTTTGCGGCTGCTAAAGGTCACAACGAGATTGTGTCCTTATTGCTTGAAAATGGAGCTGATGTGAATTCCAGGAATTACTGTGGGCAGACAGCAGTGATGCAAGCTTGTCGATATGGGCACTGGGAAGTCGTACAAACTCTTCTAGTTTTCAGATGCAATGTAATGAGAGCAGACTACCTTAGCGGTCGGACTGCTCTCCATTTTGCTGCCGTAAATGGTCATGTGAGATGTCTAAGACTCATTGTGGCCGACTTTGTTCCTAGTGTTCCCTATGAGGCTATTAATAGTCAGACAGTTGTTAGCAGAGGCGATGGTGTAAATGTGAAGAACAGATGTGAACAAGGTGCTTTGTCCAAGTTTATAAATAAGGCAGCTGATGGTGGCATTACTGCTCTTCATATGGCAGCATTAAATGGATATTATGATTGTGTTCATCTTCTTCTTGACCTACATGCTAATGTTTCAGCCGTAACATTTCATTATGGGACCTCTATGGATTTGATAGGAGCTGGAAGCACTCCATTGCATTATGCAGCTTGTGGGGGTAATTTGAAGTGCTGTCAGGCAAGATGTCTTTCGACTTTAATAATTCTCCTTGCAAGAGGTGCCTCTCGGATGACTTTGAATTGCAATGGGTGGCTTCCATTAGATGTAGCCAGAATGTGGGGACGCCACTGGCTTGAACCTCTGCTAGCTCCAAATTCTGACTCTATAATACCGAGATTCCCCACTTCTAACCACCTATCCTTGCCTCTACTGAGTGCATTAAACATTGCCAGAGAATGCGGTTTTAAGTCTATGGGAGCGACCTCTGATGATGGGGATACCTGTGCTGTCTGTCTGGAGAGAGTATGTTCCGTGGCAGCAGAGGGATGTGGACATGAGCTTTGTGTAAGATGTGCGCTCTATCTTTGTTCGACTAGCAATATCCAATCGGAAATGATTGGTTCATTGGGCTCAATTCCATGTCCGCTTTGCAGACACGGAATTATATCTTTTGTAAAATTGTCTGGTGTGACTGCAAAAGAAAAACAGCTTCATCTGTCTCTTAGCATATGCAGCCCGTGCATTCTTCATACCCGTGATGCTGAAGATCAGGCTTCAACTTGTACCCCAGAGATCCGTAAGAATCGTGTGGCTTCGGTTTCTTCAGATGTATTCTGCCCAGTAACTTGCAGTCCATTCCCTTCCGCAGCTATTCCTTTGTGTACGTGCAATGACGGTCCATGCCCGACATTCGAGTCCCGAGATGTCGGAACAGAAGACGAATCACCCCGTCAATCACAAACAACCCCAATAGACCAGGACAAATTGGGAGGTCCAAGGCCAGAAAGAACTAGCTGTTCAAGAGGCCTGGTTGGTGTGAATGATTTGTTTGGCATGACAGCAGTTTTGAGAATGTTCTGCTCCAAACTCATTGCTGCTGCCTGTACTAATAGGTAG 1593 45.7 MGNSFGCSASGERLVSAARDGDLVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVSLLLENGADVNSRNYCGQTAVMQACRYGHWEVVQTLLVFRCNVMRADYLSGRTALHFAAVNGHVRCLRLIVADFVPSVPYEAINSQTVVSRGDGVNVKNRCEQGALSKFINKAADGGITALHMAALNGYYDCVHLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQARCLSTLIILLARGASRMTLNCNGWLPLDVARMWGRHWLEPLLAPNSDSIIPRFPTSNHLSLPLLSALNIARECGFKSMGATSDDGDTCAVCLERVCSVAAEGCGHELCVRCALYLCSTSNIQSEMIGSLGSIPCPLCRHGIISFVKLSGVTAKEKQLHLSLSICSPCILHTRDAEDQASTCTPEIRKNRVASVSSDVFCPVTCSPFPSAAIPLCTCNDGPCPTFESRDVGTEDESPRQSQTTPIDQDKLGGPRPERTSCSRGLVGVNDLFGMTAVLRMFCSKLIAAACTNR 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5895482 5901435 - ClCG01G005510.2 Cla01g00540 264129

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00540 530 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Cla01g00540 530 PANTHER HOMEOBOX PROTEIN WARIAI 1 503 - -
Cla01g00540 530 Pfam Ankyrin repeats (many copies) 46 98 IPR002110 GO:0005515
Cla01g00540 530 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Cla01g00540 530 SUPERFAMILY Ankyrin repeat 14 282 IPR036770 -
Cla01g00540 530 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 386 IPR013083 -
Cla01g00540 530 Gene3D - 4 136 IPR036770 -
Cla01g00540 530 Pfam Ankyrin repeat 112 132 IPR002110 GO:0005515
Cla01g00540 530 Pfam Ankyrin repeat 221 254 IPR002110 GO:0005515
Cla01g00540 530 Pfam Ankyrin repeat 178 208 IPR002110 GO:0005515
Cla01g00540 530 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 503 - -
Cla01g00540 530 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Cla01g00540 530 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Cla01g00540 530 MobiDBLite consensus disorder prediction 466 496 - -
Cla01g00540 530 SMART ring_2 327 376 IPR001841 -
Cla01g00540 530 SMART ANK_2a 111 141 IPR002110 GO:0005515
Cla01g00540 530 SMART ANK_2a 220 260 IPR002110 GO:0005515
Cla01g00540 530 SMART ANK_2a 77 106 IPR002110 GO:0005515
Cla01g00540 530 SMART ANK_2a 44 73 IPR002110 GO:0005515
Cla01g00540 530 SMART ANK_2a 177 206 IPR002110 GO:0005515
Cla01g00540 530 ProSiteProfiles Ankyrin repeat region circular profile. 177 206 - -
Cla01g00540 530 Gene3D - 145 277 IPR036770 -
Cla01g00540 530 ProSiteProfiles Zinc finger RING-type profile. 327 377 IPR001841 -
Cla01g00540 530 ProSitePatterns Zinc finger RING-type signature. 342 351 IPR017907 -
Cla01g00540 530 ProSiteProfiles Ankyrin repeat profile. 220 260 IPR002110 GO:0005515
Cla01g00540 530 SUPERFAMILY RING/U-box 322 382 - -
Cla01g00540 530 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00540 K19044 XBAT32_33; E3 ubiquitin-protein ligase XBAT32/33 [EC:2.3.2.27] - vvi:100252095 858.981
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00540 Cla-Chr1:5895482 Cla06g01283 Cla-Chr6:26180923 1.00E-119 dispersed
Cla01g00540 Cla-Chr1:5895482 Cla11g01232 Cla-Chr11:25712079 8.74E-152 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g617 Blo06g01115 . . . . . . . . . Cma02g01040 . Car02g00785 . . Cpe05g00681 . . . . . . . . Cla01g00540 Cam01g0564 Cec01g0554 Cco01g0579 Clacu01g0560 Cmu01g0532 Cre09g1977 . . . . . Csa05g00574 Chy09g00931 . . . . Bda15g00735 . Bpe12g00419 Bma08g00340 . . Cmo02g01055 . . . . . . Cpe13g00045 . . . . . . . . . . . . . . Lsi09g00584 . . Cme09g01458
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006256 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00540 Cla_Chr01 FPKM 25.214922 29.354136 1.922767 1.211022 18.545826 18.775875 19.039347 0.0 0.0 0.0