Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00545 ATGGTGATTCCGTCATTTTCCTTTCTTCTTCTTCTTCTACCTCCCATTTTCATTATTCTCAAACACATAAAATCTCCATCTTCAAAACAACTCCCACTTCCACCAGGTCCAAGGCCATGGCCAATCTTAGGAAATCTGCTTCAGATTGGCCAAAATGCTCACATTTCCATGACTCAATTTGCCAATATCTATGGCCCTCTAATCTCCCTCAAGCTCGGAGCTCAGCGCCTCGTTGTTGCTTCTTCTCCGGCTGCCGCCACCGCAATTCTCAAGACGCAAGACCGCCTTCTGTCTGCTCGATACATCCTTCAAATGACCCCTGATAGAGCTCTCCACGATCACTGTTCTCTTGTTTTCTCCCCTGAATGTGGCGATAGTTGGAAGACTTATAGGTCCATTTGCAAAGCCAATTTGTTTACAGCCAAAGCAATTGAATCACAAGCTAATTTGAGAGAGAAGAAGATGAAGGACTTGGTGGAATTTTTAGACTCAAAACAGGGATCTGTTGTGGAGATTAAAGATTTTGTGTTTACCTCTGTTTTCAATACACTTTCTAACTTGATTTTCTCCAGAGATTTGCTTGGGTTTGTTGGTGATGGATTTAATGGGATTAAAGGGCCTTTCAAGAAAATGATGGATTTGGGTTTGACCCCAAATTTAGCTGATTTCTACCCTTTGTTGAGAAGCTTTGATCTTCAAGGTCTTCGAAAGAAGGCTGCCATTTACAGGAACCAAGTTGATTCTTCGTGGGGAATTCTTATCAAAGAAAGAAGAGAAATCCATTGTCAACAGGGTTCAGCTTCAAGTGATTTCTTGGATGTCTTGATTCAAAGTGGATTCACTGATCAACAAATTAGCTCCTTGATTATTCCATCACGTTCATCATCCGCTCCAACAAACCTCGAACACTTGTGTATTGCAAGTGGGAGAGGATTTGAGGAAGGAGCTCACGCGAGAGAGGAACAGAGAAACCCAAAGCTGTCTCTCTATCTTGTAGGACATATTGTAACAATTGAAGTGTTATCTGCAGGCACAGATACAACTACGACAACAGTGGAATGGGCAATAACAGAGTTATTGAAGAACAAAGACATATTAAATAAAGTACAAGAAGAAATAAAGAAAGTAACAAAGAAAAGGTTGATCGATGAATCCAAAATTAGTGAGCTTCATTATCTATGGAAATGTGTGAAAGAAACTCTAAGACTTCACCCACCTGCCCCATTCCTTCTTCCACGTTTAGCTCCAGAGGATTGTGAAGTAATGGGATACTCAATCCCAAAAGACACAATGATTTTTGTCAATGTTTGGGGAATTGGGAGAGACCCTTCAATTTGGGAAGATTCTCCAACATTCAATCCAGATAGATTTGGTGTTGGTTGTGATAATGTAGACTTCAAAGGGTATGATTATAGGTATTTGCCATTTGGAGGAGGAAGAAGAATTTGCCCTGGACTTCCAATGGCAATTCTGCAAGTGCCTTTGATTTTAGCCACATTAATTCACAACTTTCAATGGTCACTTCCTAATCATGAGGATTTATCAAACTTGGATTTTAATGGAAGGCTTGGTGTAACATTGCAAAAGGAAGAACCTCTTAAACTTATTCCTAAAAGGAGGATTATAATTCAATTCCATCTAGACTTGAAACATGCAAGAAGCAAGTGCCCAAGTGAGGCATTGTTGGAGAGTGGGCGGGGGAATTGGGCCCTTTGGTGGGTGGGCCATCTGGCCCGAAAAGGCCACCTCATTCTTGGAGGCCAAGGTTAG 1770 41.24 MVIPSFSFLLLLLPPIFIILKHIKSPSSKQLPLPPGPRPWPILGNLLQIGQNAHISMTQFANIYGPLISLKLGAQRLVVASSPAAATAILKTQDRLLSARYILQMTPDRALHDHCSLVFSPECGDSWKTYRSICKANLFTAKAIESQANLREKKMKDLVEFLDSKQGSVVEIKDFVFTSVFNTLSNLIFSRDLLGFVGDGFNGIKGPFKKMMDLGLTPNLADFYPLLRSFDLQGLRKKAAIYRNQVDSSWGILIKERREIHCQQGSASSDFLDVLIQSGFTDQQISSLIIPSRSSSAPTNLEHLCIASGRGFEEGAHAREEQRNPKLSLYLVGHIVTIEVLSAGTDTTTTTVEWAITELLKNKDILNKVQEEIKKVTKKRLIDESKISELHYLWKCVKETLRLHPPAPFLLPRLAPEDCEVMGYSIPKDTMIFVNVWGIGRDPSIWEDSPTFNPDRFGVGCDNVDFKGYDYRYLPFGGGRRICPGLPMAILQVPLILATLIHNFQWSLPNHEDLSNLDFNGRLGVTLQKEEPLKLIPKRRIIIQFHLDLKHARSKCPSEALLESGRGNWALWWVGHLARKGHLILGGQG 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5940377 5943563 + ClCG01G005560.1 Cla01g00545 264134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00545 589 Gene3D Cytochrome P450 18 546 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00545 589 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 476 485 IPR017972 GO:0005506|GO:0016705
Cla01g00545 589 Pfam Cytochrome P450 34 285 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00545 589 Pfam Cytochrome P450 337 528 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00545 589 SUPERFAMILY Cytochrome P450 32 540 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00545 589 PRINTS P450 superfamily signature 483 494 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00545 589 PRINTS P450 superfamily signature 343 360 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00545 589 PRINTS P450 superfamily signature 474 483 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00545 589 PRINTS P450 superfamily signature 395 406 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00545 589 PANTHER (S)-N-METHYLCOCLAURINE 3'-HYDROXYLASE ISOZYME 1-LIKE 7 289 - -
Cla01g00545 589 PANTHER (S)-N-METHYLCOCLAURINE 3'-HYDROXYLASE ISOZYME 1-LIKE 336 538 - -
Cla01g00545 589 PRINTS E-class P450 group I signature 352 378 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00545 589 PRINTS E-class P450 group I signature 435 459 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00545 589 PRINTS E-class P450 group I signature 394 412 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00545 589 PRINTS E-class P450 group I signature 483 506 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00545 589 PRINTS E-class P450 group I signature 332 349 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00545 589 PRINTS E-class P450 group I signature 473 483 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00545 589 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00545 589 PANTHER CYTOCHROME P450 71B11-RELATED 7 289 - -
Cla01g00545 589 PANTHER CYTOCHROME P450 71B11-RELATED 336 538 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00545 - - - csv:116403724 769.615
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00545 Cla-Chr1:5940377 Cla11g00033 Cla-Chr11:465719 0 dispersed
Cla01g00544 Cla-Chr1:5932862 Cla01g00545 Cla-Chr1:5940377 1.02E-138 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g606 . Blo15g00156 . . Bpe03g00135 Bpe07g00949 Bma10g01211 . . . . . . . . . . . . . . . . . Cla01g00545 . . . . . . . Cone5ag0838 . . . Csa05g00580 Chy09g00925 . Blo07g00422 Blo09g00081 Bda06g00671 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g00589 . . Cme09g01454
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000969 6 2 3 2 3 2 1 3 3 2 3 2 1 1 1 2 2 11 1 3 2 3 2 3 3 3 0 2 4 4 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00545 Cla_Chr01 FPKM 30.751917 29.555302 31.934418 32.345745 10.994158 11.170423 12.657042 1.916203 1.59593 1.483477