Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00550 ATGTATATAACTGACCTCCCCTTTCTTCCTTCTTCTTCCTCTTTCTCTCTCTCGGATTTCAATTCTCCGAATTCACAGCGAAGCGAAGGCTTTAGCTTCCATTACTTGTCTGGTTTCAGCCTCTTTTCCGCTTTTCAAGTGGCCGTTAGTGGTCTTCTGCATATTGTTGAAATAGCAACCAGGATCGCAGATCACACGCACATTGCAATCTGGTTCACGGATGTCTATGAGCAAAGACTGGCTCTAGAGAGTTACTTGGACGCTGGCCACCAAGGATTGGTGCCCCCAATGGCAGCTTCTCGGGTGGCTGGAGGATTAGCGCAATCTTCCTCAAGTTCTGGGATTTTTTTCCAAGGAGATGGGCAGTCCAAGGCTACTGTTAAATCTCACTTGGGCTCATCTTATGGAAACTCATCAAATTCAATTCTAGGAACTGGCCATTCAAATTTGGGTCCAGTTTCTGGGGACACAAATGGTATGTTTAATAGTGTGGCAAACTCAGGACCAAGTGTTGGGGCAAGTTCTTTGGTTACAGATGCAAATTCTGCTCTTTCAGGTGGGCCTCACTTGCAGAGAAGTCCAAGCATGAATGCAGAATCATACATGCGATTACCTACATCGCCTATGTCTTTTACATCAAATAACATGAGTGTCTCAGGTGCATCACTCATTGATGCATCTTCTGTACTGCAGCACAATTCTCAGCAGGATCATAATGCTTCCCAATTGCCACAGAACCAGCAACAGGCCCGACAAGTTTCTTCAGGTGATGCGTTACTGTCTAATTCACAAACTGTCCAAGCTTCACTCCCCATGGGTGCACGTGTCTCTGGATCTCTCATGACAGATCCCAATAGTTATTCTCAGTCACAGAAGAAACCACGCTTGGATATTAAGCAGGATGATTTTCTGCAACAGCAGGTACTACAACAGCTACTGCAGAGACAAGATTCCATGCAATTGCAAGGTCGTAATACACCTCAGTTACAAGCAGCATTATTTCAGCAGCAACAGAGATTACGACAACAGCAACAAATTTTTCAGTCTTTACCTCCTTTGCAGAGAGCTCATATGCAGCAGCAGCAGCAGATACAGTTGAGGCAGCAACTTCAGCAACAGGCAATACAGCCTGTAAATGCTATGAAGCGGCCTCATGATGGTGGTGTGTGTGCTCGGCGGCTAATGCAGTACCTATACCATCAGCGTCAAAGGCCTGCTGATAATAGTATTGCCTATTGGAGGAAGTTCGTGACTGAATATTATTCCCCTCGTGCAAAGAAAAGATGGTGTTTGTCATTATATAACAATGTTGGGCATCATGCACTTGGTGTCTTCCCTCAAGCAGCCATGGATGCATGGCAGTGTGACATTTGTGGTTCAAAATCAGGACGGGGATTTGAGGCTTCCTTTGAAGTGCTTCCTAGGCTTAATGAGATCAAATTTGGCAGTGGAGTCATTGATGAGCTATTGTTCTTGGATATGCCACGGGAATTCAGATATTCATCTGGAATCATGATGTTAGAATATGGAAAAGCAGTACAAGAGAGTGTATATGAGCAACTTCGTGTTGTTCGTGAGGGACAGCTTCGTATCATATTTACTCATGAATTGAAGATATTGGCATGGGAATTTTGTGCAAGACGCCATGAAGAACTTCTTCCTCGTAGACTGGTTGCACCTCAGGTGAATCAGTTGGTCCAGGTGGCACAGAAATGCCAGAGCACTATTGCTGAAGGAGGATCTGATGGGGCTTCTCAGCAGGATTTACAAGCAAATAGTAATATGGTTTTGACAGCTGGGCAGCAGCTTGCCAAGAGTCTGGAGTTGCAGTCACTGAATGATTTGGGGTTCTCTAAAAGATACGTCAGATGCTTGCAGATATCAGAGGTTGTCAATAGCATGAAAGATTTGATTGATTTCTGTAGGGAGCAGAAAACCGGACCAGTTGAGGGTCTGAAAAGTTATCCTCAGCACGCCACAGCCAAGCTGCAGATGCAAAAAATGCAAGAGATTGAGCAGGTTGCTACTGCTCAGAGTCTGCCAACCGACCGTAACACCCTTAATCGAATGGTCGCGATGCATCCTGGGCTGAACAACCAAATGAATAGCCAAAATCAACTAGTCGGCAGAGGAACTTTGAGTGGTTCAGCACAAGCTGCGTTGGCATTGTCTAACTACCAGAATCTGCTAATGAGACAGAACTCCATGAATTCAACAAGTTCAAACCCACTCCAGCAGGAGACATCATCGTCATTCAATAACTCAAACCAGAGTCCTTCATCAAGCTTTCCTGGAACAACTGCTATAGCATCGGCACCGATGCAGACCTTGCCCAGCAGTGGTCTTTCAAGTCCTAATCTGCCTCAGCAGCAATCTCAAGTTCAACAGCAACTGCATCAGCGCCCAAACACCAACAACTTACTCGTGCAACATCATCCTCAGAGTACGCAAGGTAACAGTAACACTATGCAACATCAGATGATCCAGCAACTACTCCAGATATCTAATAACAGTGGGGGAGGACAACAGCAACCACTTTCTGGATCAAACACAAAAGCAAGCATTGCCGGAGCTTATACGGGATACGGAGGCAGCTCTTCTGTGGTGGCTGCAGGCACAGCCAATGCATCTGGTAGTAATACGCCTGCTCCAAGCCGAAGCAACAGTTTCAAAAGTGCTTCAACTGGTGACGTATCAGCAGCCGGTGCTCGTAGCAGTGGGTTCAACCAAAGAAGTGCAGATTTGGCACAAAATCTTCATTTGGATGAGGATATAATGCAGGATATAGCCCATGATTTTACAGATAATGGGTTTTTTAACAGTGATCTTGATGATAATATGTGCTTCACCTGGAAAGGTCAACTAACATAA 2871 45.25 MYITDLPFLPSSSSFSLSDFNSPNSQRSEGFSFHYLSGFSLFSAFQVAVSGLLHIVEIATRIADHTHIAIWFTDVYEQRLALESYLDAGHQGLVPPMAASRVAGGLAQSSSSSGIFFQGDGQSKATVKSHLGSSYGNSSNSILGTGHSNLGPVSGDTNGMFNSVANSGPSVGASSLVTDANSALSGGPHLQRSPSMNAESYMRLPTSPMSFTSNNMSVSGASLIDASSVLQHNSQQDHNASQLPQNQQQARQVSSGDALLSNSQTVQASLPMGARVSGSLMTDPNSYSQSQKKPRLDIKQDDFLQQQVLQQLLQRQDSMQLQGRNTPQLQAALFQQQQRLRQQQQIFQSLPPLQRAHMQQQQQIQLRQQLQQQAIQPVNAMKRPHDGGVCARRLMQYLYHQRQRPADNSIAYWRKFVTEYYSPRAKKRWCLSLYNNVGHHALGVFPQAAMDAWQCDICGSKSGRGFEASFEVLPRLNEIKFGSGVIDELLFLDMPREFRYSSGIMMLEYGKAVQESVYEQLRVVREGQLRIIFTHELKILAWEFCARRHEELLPRRLVAPQVNQLVQVAQKCQSTIAEGGSDGASQQDLQANSNMVLTAGQQLAKSLELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDFCREQKTGPVEGLKSYPQHATAKLQMQKMQEIEQVATAQSLPTDRNTLNRMVAMHPGLNNQMNSQNQLVGRGTLSGSAQAALALSNYQNLLMRQNSMNSTSSNPLQQETSSSFNNSNQSPSSSFPGTTAIASAPMQTLPSSGLSSPNLPQQQSQVQQQLHQRPNTNNLLVQHHPQSTQGNSNTMQHQMIQQLLQISNNSGGGQQQPLSGSNTKASIAGAYTGYGGSSSVVAAGTANASGSNTPAPSRSNSFKSASTGDVSAAGARSSGFNQRSADLAQNLHLDEDIMQDIAHDFTDNGFFNSDLDDNMCFTWKGQLT 956
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6019671 6033445 - ClCG01G005640.1 Cla01g00550 264139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00550 956 MobiDBLite consensus disorder prediction 874 907 - -
Cla01g00550 956 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 101 244 - -
Cla01g00550 956 PANTHER LIM DOMAIN-BINDING PROTEIN 274 952 IPR029005 -
Cla01g00550 956 MobiDBLite consensus disorder prediction 231 258 - -
Cla01g00550 956 Pfam LIM-domain binding protein 393 653 IPR029005 -
Cla01g00550 956 MobiDBLite consensus disorder prediction 279 293 - -
Cla01g00550 956 MobiDBLite consensus disorder prediction 275 295 - -
Cla01g00550 956 PANTHER LIM DOMAIN-BINDING PROTEIN 101 244 IPR029005 -
Cla01g00550 956 MobiDBLite consensus disorder prediction 735 800 - -
Cla01g00550 956 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 274 952 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g00550 Cla05g00855 CCT
Cla01g00550 Cla05g00855 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00550 Cla-Chr1:6019671 Cla08g00284 Cla-Chr8:6122329 3.78E-87 dispersed
Cla08g00655 Cla-Chr8:18793469 Cla01g00550 Cla-Chr1:6019671 3.25E-108 transposed
Cla01g00550 Cla-Chr1:6019671 Cla05g00855 Cla-Chr5:8471780 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00550 - - bhj:120092747 1411.74