Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cla01g00552	ATGGATTTTTCCGATTCCTTTTCTTCCTCCCCACTTTGCCACCGCTCCAATCACTCCGACGAGGAGCTTCTTTTGGCGTCCCGATATCCGAAGAAGAGAGCTGGCAGAAAGAAGTTTAAGGAAACTCGCCACCCTATCTTCCGTGGGGTGCGACAGCGGAACTCCGGCAAGTGGGTTTGTGAAGTCAGAGAGCCCAATAAGAAGACTAGGATTTGGCTTGGCACTTTCCCCACTGCTGAGATGGCTGCTCGCGCTCACGATGTTGCTGCCATCGCTCTCCGTGGCCGCTCTGCTTGTCTTAATTTTGCTGATTCTGCCTCCACGCTTCCCGTTCCGGCTACTGTCGATCCTAAGGATATACAGAGGGCTGCGGCTCAGGCTGCAGACGCCTTCCGCCCTCCCGAGGATCAATTGAGGCCTGCCGTGGCCGCGGCGGAGGAGGAAGAGGTGTTTTATTTGGATGAGGAGGCGTTGTTTGGGATGCCGGGGTTGCTGGCGGATATGGCGGAGGCAATGCTTTTGCCGCCGCCCAATTGTGTGGGGAACGACAATGACGACTATGGGGTTAATTCTATGGATTTCGATGCCGACATGTCGTTGTGGAGTTACTCAATTTGA	618	54.69	MDFSDSFSSSPLCHRSNHSDEELLLASRYPKKRAGRKKFKETRHPIFRGVRQRNSGKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSASTLPVPATVDPKDIQRAAAQAADAFRPPEDQLRPAVAAAEEEEVFYLDEEALFGMPGLLADMAEAMLLPPPNCVGNDNDDYGVNSMDFDADMSLWSYSI	205

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
1	6088208	6088825	+	ClCG01G005660.1	Cla01g00552	264141

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cla01g00552	205	PRINTS	Ethylene responsive element binding protein signature	47	58	IPR001471	GO:0003700\|GO:0006355
	Cla01g00552	205	PRINTS	Ethylene responsive element binding protein signature	69	85	IPR001471	GO:0003700\|GO:0006355
	Cla01g00552	205	ProSiteProfiles	AP2/ERF domain profile.	46	103	IPR001471	GO:0003700\|GO:0006355
	Cla01g00552	205	CDD	AP2	45	105	IPR001471	GO:0003700\|GO:0006355
	Cla01g00552	205	PANTHER	AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR	8	205	-	-
	Cla01g00552	205	Pfam	AP2 domain	45	95	IPR001471	GO:0003700\|GO:0006355
	Cla01g00552	205	SUPERFAMILY	DNA-binding domain	46	105	IPR016177	GO:0003677
	Cla01g00552	205	SMART	rav1_2	46	109	IPR001471	GO:0003700\|GO:0006355
	Cla01g00552	205	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D	8	205	IPR045277	GO:0003700
	Cla01g00552	205	Gene3D	AP2/ERF domain	46	104	IPR036955	GO:0003700\|GO:0006355

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Cla01g00552	Cla05g00845	CCT
	Cla01g00552	Cla05g00845	ECH

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cla01g00552	Cla-Chr1:6088208	Cla10g01829	Cla-Chr10:34256760	4.69E-45	dispersed
	Cla01g00552	Cla-Chr1:6088208	Cla05g00845	Cla-Chr5:8356626	7.23E-81	transposed

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	60369	PF00847	AP2	7.60E-15	CL0081	Cla	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cla01g00552	-		-	csv:101207745	334.339