Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00552 ATGGATTTTTCCGATTCCTTTTCTTCCTCCCCACTTTGCCACCGCTCCAATCACTCCGACGAGGAGCTTCTTTTGGCGTCCCGATATCCGAAGAAGAGAGCTGGCAGAAAGAAGTTTAAGGAAACTCGCCACCCTATCTTCCGTGGGGTGCGACAGCGGAACTCCGGCAAGTGGGTTTGTGAAGTCAGAGAGCCCAATAAGAAGACTAGGATTTGGCTTGGCACTTTCCCCACTGCTGAGATGGCTGCTCGCGCTCACGATGTTGCTGCCATCGCTCTCCGTGGCCGCTCTGCTTGTCTTAATTTTGCTGATTCTGCCTCCACGCTTCCCGTTCCGGCTACTGTCGATCCTAAGGATATACAGAGGGCTGCGGCTCAGGCTGCAGACGCCTTCCGCCCTCCCGAGGATCAATTGAGGCCTGCCGTGGCCGCGGCGGAGGAGGAAGAGGTGTTTTATTTGGATGAGGAGGCGTTGTTTGGGATGCCGGGGTTGCTGGCGGATATGGCGGAGGCAATGCTTTTGCCGCCGCCCAATTGTGTGGGGAACGACAATGACGACTATGGGGTTAATTCTATGGATTTCGATGCCGACATGTCGTTGTGGAGTTACTCAATTTGA 618 54.69 MDFSDSFSSSPLCHRSNHSDEELLLASRYPKKRAGRKKFKETRHPIFRGVRQRNSGKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSASTLPVPATVDPKDIQRAAAQAADAFRPPEDQLRPAVAAAEEEEVFYLDEEALFGMPGLLADMAEAMLLPPPNCVGNDNDDYGVNSMDFDADMSLWSYSI 205
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 6088208 6088825 + ClCG01G005660.1 Cla01g00552 264141
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00552 205 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Cla01g00552 205 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Cla01g00552 205 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Cla01g00552 205 CDD AP2 45 105 IPR001471 GO:0003700|GO:0006355
Cla01g00552 205 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR 8 205 - -
Cla01g00552 205 Pfam AP2 domain 45 95 IPR001471 GO:0003700|GO:0006355
Cla01g00552 205 SUPERFAMILY DNA-binding domain 46 105 IPR016177 GO:0003677
Cla01g00552 205 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Cla01g00552 205 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 205 IPR045277 GO:0003700
Cla01g00552 205 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cla01g00552 Cla05g00845 CCT
Cla01g00552 Cla05g00845 ECH
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00552 Cla-Chr1:6088208 Cla10g01829 Cla-Chr10:34256760 4.69E-45 dispersed
Cla01g00552 Cla-Chr1:6088208 Cla05g00845 Cla-Chr5:8356626 7.23E-81 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60369 PF00847 AP2 7.60E-15 CL0081 Cla TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00552 - - csv:101207745 334.339