Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g00552 | ATGGATTTTTCCGATTCCTTTTCTTCCTCCCCACTTTGCCACCGCTCCAATCACTCCGACGAGGAGCTTCTTTTGGCGTCCCGATATCCGAAGAAGAGAGCTGGCAGAAAGAAGTTTAAGGAAACTCGCCACCCTATCTTCCGTGGGGTGCGACAGCGGAACTCCGGCAAGTGGGTTTGTGAAGTCAGAGAGCCCAATAAGAAGACTAGGATTTGGCTTGGCACTTTCCCCACTGCTGAGATGGCTGCTCGCGCTCACGATGTTGCTGCCATCGCTCTCCGTGGCCGCTCTGCTTGTCTTAATTTTGCTGATTCTGCCTCCACGCTTCCCGTTCCGGCTACTGTCGATCCTAAGGATATACAGAGGGCTGCGGCTCAGGCTGCAGACGCCTTCCGCCCTCCCGAGGATCAATTGAGGCCTGCCGTGGCCGCGGCGGAGGAGGAAGAGGTGTTTTATTTGGATGAGGAGGCGTTGTTTGGGATGCCGGGGTTGCTGGCGGATATGGCGGAGGCAATGCTTTTGCCGCCGCCCAATTGTGTGGGGAACGACAATGACGACTATGGGGTTAATTCTATGGATTTCGATGCCGACATGTCGTTGTGGAGTTACTCAATTTGA | 618 | 54.69 | MDFSDSFSSSPLCHRSNHSDEELLLASRYPKKRAGRKKFKETRHPIFRGVRQRNSGKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSASTLPVPATVDPKDIQRAAAQAADAFRPPEDQLRPAVAAAEEEEVFYLDEEALFGMPGLLADMAEAMLLPPPNCVGNDNDDYGVNSMDFDADMSLWSYSI | 205 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 6088208 | 6088825 | + | ClCG01G005660.1 | Cla01g00552 | 264141 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g00552 | 205 | PRINTS | Ethylene responsive element binding protein signature | 47 | 58 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g00552 | 205 | PRINTS | Ethylene responsive element binding protein signature | 69 | 85 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g00552 | 205 | ProSiteProfiles | AP2/ERF domain profile. | 46 | 103 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g00552 | 205 | CDD | AP2 | 45 | 105 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g00552 | 205 | PANTHER | AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR | 8 | 205 | - | - | |
Cla01g00552 | 205 | Pfam | AP2 domain | 45 | 95 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g00552 | 205 | SUPERFAMILY | DNA-binding domain | 46 | 105 | IPR016177 | GO:0003677 | |
Cla01g00552 | 205 | SMART | rav1_2 | 46 | 109 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g00552 | 205 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 8 | 205 | IPR045277 | GO:0003700 | |
Cla01g00552 | 205 | Gene3D | AP2/ERF domain | 46 | 104 | IPR036955 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla01g00552 | Cla05g00845 | CCT | |
Cla01g00552 | Cla05g00845 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g00552 | Cla-Chr1:6088208 | Cla10g01829 | Cla-Chr10:34256760 | 4.69E-45 | dispersed | |
Cla01g00552 | Cla-Chr1:6088208 | Cla05g00845 | Cla-Chr5:8356626 | 7.23E-81 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60369 | PF00847 | AP2 | 7.60E-15 | CL0081 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g00552 | - | - | csv:101207745 | 334.339 |