Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00560 ATGACATCAAATTTGCTATTTAACCGTTATTTTATGATGATGAACAAATTTGGTATTCTTGTTGCTGTTTCAGTTGCAGCTTATGCAATTAGGCAGCTCACAATCAGATCATGGAGCTCATTATTCTTGCCTACCAACTGTTCAGAAAATGGAGAAGACATGGAGAAGAACGTAAGGCAATACCGAAGAATTCTTTGTGGATTGGATGAAGAAGAAGAGGAAACTAATTCATTAAATGATGCAAGTAGTGAAGTTAATGGTAGGATCTTTGATCTTGAAGATGGAGATCGTAATTCAGATGAGTTTCAAGTACTTTTACAACGAGAGTCCCAAAATCGGTTGCTTGATGACAATAAGAAAGAAGAAAAAGTGCCTGAAATCCAGATAGAAAACAGTAAGATTGAATTGGAAAGGTTGGTGAAACTAGTGATGGAATTGGAGGAGAGGAAAGTGAAACTTGAAGGTGAATTGGTCATGTGCGACGGAATAAAATACAGTGAAACCGACGTCACAGAGTTACGAAAGCAGCTCGAGGCCAAGACTGATGATATCAGTATGCTTAATACCACAATCAGCTCTTTGCAGGCTGAGAGAAAGATTCTACAAGAAGAGATAGTGAAGGGAGCACTGATGAAGAAGGAACTAGAGGAGGCTAGGGGAAAGATTAAGGATCTGCAAAGGCAAATTCAGCTTGATGCAAACCAAACAAAAGAACACTTATTATTACTCAAACAACGAGTTTCTGCTTTGCAGGCGAAAGAGGAAGAGGCCGTCAAGAAAGAAGCAGAACTCTATAAGAAACAGAAAGCGGCGAAGGATTCCGAGGTAGAACTTGGGGAGCTTAAGCGGAAGAATCGAGAGCTTCAACACGAAAAGCAGGAACTAACTTCTAAACTAGAAGTTATGAAGGCCAGAATCAAAACACTGACTAAAATAACAGAGAGTGAAATAATCACTAAGGAAAGAGAAGAAGCTCAAAAGTTAAAGAGTGAAAATGAGGATCTGATAAAGCAACTTGAAAGGCTTCAGATGAATAGGTTTAGTGAAGTTGAAGAGTTAGTCTACCTTCGTTGGATCAATGCTTGCTTGAGGTATGAGCTTCGAGACAACGAGATATCGGCAGGCGAATCTGCTCGTTATCTCAATAAGAGTTCAAGTCCAAAGTCAAAAGAAAAGGCAAAACAACTCATGTTAGAGTATGCAGGATTGGAGTTTGGACAAGCAGAAACAGATCATGAAAGCAACTTTTCTCATCCATTCTCCTCTGGGATTGAAGATCTTGACAATACTTCAATTGATAGTTCAAGGAGCAGAACTAGTAGTTTCAGTGAGAAGCCTAATTCAAATTTGAGTTTGAAGAAATTGATCAGAAACAAAAGTGGTTCGAGTGCTGTTTCGTCTCCACGCATAATCGGTTCGAGCCACAGATGGAAGGATCCTTTAGAAGCAGTGATGGCTCTGAGTGCTGAAACTCTAACTCTCTCAGAAGTTAGATTAAAAGTTTCTTCAAGAAAATCTGTCAACTCAGTTGCAACGTCATTCCAACTCATGTCTAAATCAGTTGAAGAAAGTCTAAAACAGAAATATTCAACATATGAAGAGAATCATAAGTTGGCCATAGGGAGTGAGAAGCAAATCAAGGAAAAGGCTGAGAATGAAAGGGCAAAAAGTTCTGGTGATGCTTCGAGTCCGAATTTAGAATACAATGACACTAGCATGAGAACGAAGCCTGCAATTTTACCCGTTAAACTTGCTCAAATGAAGATGAATAAAACTTCTTGTGATCCAGATAGCCAATATGATGATAGCAAAAATATGATCTCCAATCCAACTTCTGGAGGTGAAGTTCATCGAGGACCGGAGTTACTTCGGTTCAATCGAAAAATGATTAAACCTGAGGTGAAAGCTGATATGGAAACTCAAGGAGACTTGGTTGTGGCATTGGCAATGGAAGTTAGAGAAGCATCTTTCACACACATGGAAGACGTCGTCTCCTTCGCTATATGGCTCGATGAAAAGTTATCTTCTTTGGTTGATGAGATGGAGATTCTCGAGCATTTCGATTGGCCCAAGGAAAAAACAGATGCATTAAGAGAAGCAGCGTTTGAATATCAGAAGCTGATGAAACTAAAAGAAGAAGTCTCTTCTTTTGTTGACAATCCCAAACTCACATGTGAAGTTGCTTTAAACAAAATGAACTCTTTGCTAGATAAGGTGGAGCAGAGTGCCTATGGATTGTTTCATACAAGGGATGCAACGATTTCGCGATATGAGGAACTCGGAATTCCCATTGATTGGTTGTTGGATTGTGGAGTTGTTGGCAAGATAAAGGTGTCATGTGTAGAATTGGCAAGGAAGTACATGAAACGCATAGTAAAAGAACATAATGCACTAAATAGACCTGAGAAAGAACCAAACAGAGAGTTTTTGCTCTTACAAGGATTTGCAGGAGACTTTGATTTCGAGAGCATGAAGGCTTTTGAAGAGCTGAGAAGTCGTGTCCATACAGAGGCAGGACAAAAAAGTTGA 2529 39.46 MTSNLLFNRYFMMMNKFGILVAVSVAAYAIRQLTIRSWSSLFLPTNCSENGEDMEKNVRQYRRILCGLDEEEEETNSLNDASSEVNGRIFDLEDGDRNSDEFQVLLQRESQNRLLDDNKKEEKVPEIQIENSKIELERLVKLVMELEERKVKLEGELVMCDGIKYSETDVTELRKQLEAKTDDISMLNTTISSLQAERKILQEEIVKGALMKKELEEARGKIKDLQRQIQLDANQTKEHLLLLKQRVSALQAKEEEAVKKEAELYKKQKAAKDSEVELGELKRKNRELQHEKQELTSKLEVMKARIKTLTKITESEIITKEREEAQKLKSENEDLIKQLERLQMNRFSEVEELVYLRWINACLRYELRDNEISAGESARYLNKSSSPKSKEKAKQLMLEYAGLEFGQAETDHESNFSHPFSSGIEDLDNTSIDSSRSRTSSFSEKPNSNLSLKKLIRNKSGSSAVSSPRIIGSSHRWKDPLEAVMALSAETLTLSEVRLKVSSRKSVNSVATSFQLMSKSVEESLKQKYSTYEENHKLAIGSEKQIKEKAENERAKSSGDASSPNLEYNDTSMRTKPAILPVKLAQMKMNKTSCDPDSQYDDSKNMISNPTSGGEVHRGPELLRFNRKMIKPEVKADMETQGDLVVALAMEVREASFTHMEDVVSFAIWLDEKLSSLVDEMEILEHFDWPKEKTDALREAAFEYQKLMKLKEEVSSFVDNPKLTCEVALNKMNSLLDKVEQSAYGLFHTRDATISRYEELGIPIDWLLDCGVVGKIKVSCVELARKYMKRIVKEHNALNRPEKEPNREFLLLQGFAGDFDFESMKAFEELRSRVHTEAGQKS 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6220430 6227952 - ClCG01G005740.2 Cla01g00560 264149

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00560 842 Coils Coil 177 204 - -
Cla01g00560 842 MobiDBLite consensus disorder prediction 557 572 - -
Cla01g00560 842 Coils Coil 129 156 - -
Cla01g00560 842 Coils Coil 318 345 - -
Cla01g00560 842 Coils Coil 250 312 - -
Cla01g00560 842 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 13 602 IPR040265 -
Cla01g00560 842 MobiDBLite consensus disorder prediction 543 572 - -
Cla01g00560 842 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 13 602 - -
Cla01g00560 842 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 634 839 IPR040265 -
Cla01g00560 842 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 634 839 - -
Cla01g00560 842 MobiDBLite consensus disorder prediction 412 446 - -
Cla01g00560 842 Coils Coil 208 235 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00560 - - - csv:101222579 1304.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00560 Cla-Chr1:6220430 Cla01g02480 Cla-Chr1:38455986 3.96E-20 dispersed
Cla01g00560 Cla-Chr1:6220430 Cla05g02336 Cla-Chr5:34948131 4.38E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g251 . Blo16g01047 . Bda11g00222 Bpe13g01324 . . . Cmo04g01612 Cmo18g01069 . Cma18g01050 Car04g01590 Car18g00975 Sed06g1858 Cpe09g00269 Cpe01g01369 Bhi07g01378 Tan04g0905 Cmetu10g1207 Lac13g0451 Hepe10g1864 . . . . . . . . . Cone13ag0861 Cone19ag0861 . . . Csa05g02076 Chy10g01109 Cme10g00298 . . . Bda11g00222 . . . Bma06g00775 . . . . Cma15g01418 . Car15g01280 Cpe13g00031 . Bhi12g00819 . . . . . Lcy10g0877 Cla01g00560 Cam01g0583 Cec01g0575 Cco01g0599 Clacu01g0578 Cmu01g0549 Cre09g1958 Lsi09g00609 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012142 0 6 0 0 0 1 0 1 1 1 1 1 1 1 1 0 1 0 1 1 1 0 2 0 1 1 1 3 3 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00560 Cla_Chr01 FPKM 72.290939 76.189934 116.474419 108.934616 64.982277 57.371529 67.505539 168.360443 180.046799 182.943695