Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00562 ATGGATATGGCTTCAGATACTGGTTCCAGGGCGAGTTCAGCTGCCGATTCGTACATTGGAAGCTTGATAAGTTTGACTTCCAAGAGTGAAATTAGATACGAAGGCGTACTGTACAACATTAACACCGAAGAGTCCAGTATTGGACTAAGAAACGTGAGATCTTTTGGAACAGAAGGAAGAAAAAAAGATGGCCCCCAAGTCCCTCCAAGTGATAAAGTTTTTGAGTACATCTTATTCCGTGGAAGTGATATCAAGGTTAAATCGTCTCCACCTGTTCAGCCGGCAGCTCCTATAAATAATGATCCAGCAATCATTCAATCTCACTATCCCCCATCAGTTTCCACATCTACCAGCATGCATTCTGCTGTCAGTGGGTCACTACCTGATCATACTTCCCACACAGCATTTGGATTCCCTCAGTCTAATTTTCAAGGTGGTTTGCCTCCATATCAACCTGGAGGCAACTTGGGGTCGTGGGGAGCTTCTCCTCCGCCTCCTCCAAGTGCAAATGGCAGTGGACTTGCGATGCCCATGTATTGGCAAGGGTATTATGGCCCACCAAATGGGCTTCCTCAGTTACACCAGCAGTCGATTGTACGACCTCCTCCTGGTCTGTCAATACCTCCATCTTTGCAACAGTCAATGCAGTATCCTAACATTAGTGCGTCTTTACCCACTGGAGCTCCAAAACAACCTGAAGTTCCATCTCCCTTGCTCTCTGGTAGTAATAGTTCTCCTAACTTGACCTCCACTGTTGTGCCCCCTCCAACCTTTTCAACAGCTTTGCCTATGTTCCCTTTTACTTCTATTTCTGAAACGTTACCAAGTTCAGCTGCTAATAAGACAGCTGTTCCTACCCTTCCTGGAGCCCCAGTTAGTGTTAGTTTGCCAGTAGGTCCAATACTGTCTTCATTTTCTGTTGCAGATGTTAGTTCTGCCATACCACCAAGCTCTAATGAACCTAATACAGTTTCTGGTCCCTCATCACTGTATCAAACTGTGTCTCAGTCAACTTCATCTGTAGTTGGAATATCCAACTCTCGCGCTGAATCTTCTGTACCTTCTCTAGTTACCCCTGGGCAGCTGTTGCAGTCTGGGCCTGCTGCTGTGGTTTCATCTCAATCCTCACATACAGTGCATAAGGATGTGGAAGTGGTCCAATCATCATCGTTAGAACCTTCTAAGCCAGTGACAACAGAGGCCCAGCCACCAATACTACCACTACCTGTACTTTCAAGGCCTGTCCAGAAGGCCAATGGTGCTCATTTTCAGGCTCGCCATTTTTACAGAGGACGTGAAAGAGGAAGAGGGTCTGGGAGTTCCCGACCTGTGACCAAATTTATGGAAGATTTTGATTTCATAGCTATGAACGAAAAATTCAACAAGGATGAAGTATGGGGAAATCTAGGTAAAGGTAATAAATCTCATCTCAAGGATAAGGATGTGGATGGAAAGGTCAGTGATGAAGATGATGTTGAAGAAGAAGATGAAGGTGAACTCTCACAGTCTGGGATTAAGCCCTTGTATAACAAGGATGACTTCTTTGATTCACTCTCTTACAATGCTGTTGATAATGATCCTCAAAATGGGCGGACTAGATATTCAGAGCAAGTAAAGATAGACACAGAGACTTTTGGTGATTTTCCGAGGTATCGAGGGGGCCGAGGTGGGCGAGGTCCTGGACGTGGAGGGTACTTCCGTGGAGGATATCATGGAAGAGGATATGGCTATAATGGGAGGGGTCGGGGGCAAGGACGCTCATCATTTTATCCCAACGATAGCGAGGATGCAAAGGGGTTACTATGTCTCATACATAGGTCCCTCGGTCCCAATATCGTCTTCATTGCCCCATTTGGCAGCCACTCTACATCCATCCCTAACGCGTTCGCCCTGCAAATTGATCAAGTTTGCAAATAA 1917 45.91 MDMASDTGSRASSAADSYIGSLISLTSKSEIRYEGVLYNINTEESSIGLRNVRSFGTEGRKKDGPQVPPSDKVFEYILFRGSDIKVKSSPPVQPAAPINNDPAIIQSHYPPSVSTSTSMHSAVSGSLPDHTSHTAFGFPQSNFQGGLPPYQPGGNLGSWGASPPPPPSANGSGLAMPMYWQGYYGPPNGLPQLHQQSIVRPPPGLSIPPSLQQSMQYPNISASLPTGAPKQPEVPSPLLSGSNSSPNLTSTVVPPPTFSTALPMFPFTSISETLPSSAANKTAVPTLPGAPVSVSLPVGPILSSFSVADVSSAIPPSSNEPNTVSGPSSLYQTVSQSTSSVVGISNSRAESSVPSLVTPGQLLQSGPAAVVSSQSSHTVHKDVEVVQSSSLEPSKPVTTEAQPPILPLPVLSRPVQKANGAHFQARHFYRGRERGRGSGSSRPVTKFMEDFDFIAMNEKFNKDEVWGNLGKGNKSHLKDKDVDGKVSDEDDVEEEDEGELSQSGIKPLYNKDDFFDSLSYNAVDNDPQNGRTRYSEQVKIDTETFGDFPRYRGGRGGRGPGRGGYFRGGYHGRGYGYNGRGRGQGRSSFYPNDSEDAKGLLCLIHRSLGPNIVFIAPFGSHSTSIPNAFALQIDQVCK 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6241048 6250006 - ClCG01G005760.2 Cla01g00562 264151

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00562 638 ProSiteProfiles FFD box profile. 507 522 IPR025761 -
Cla01g00562 638 CDD LSm14_N 15 85 IPR025609 -
Cla01g00562 638 SMART LSM14_2 12 109 IPR025609 -
Cla01g00562 638 Pfam Scd6-like Sm domain 18 85 IPR025609 -
Cla01g00562 638 MobiDBLite consensus disorder prediction 220 252 - -
Cla01g00562 638 MobiDBLite consensus disorder prediction 546 565 - -
Cla01g00562 638 MobiDBLite consensus disorder prediction 386 405 - -
Cla01g00562 638 MobiDBLite consensus disorder prediction 312 331 - -
Cla01g00562 638 ProSiteProfiles DFDF domain profile. 439 475 IPR025762 -
Cla01g00562 638 Gene3D - 8 89 - -
Cla01g00562 638 ProSiteProfiles TFG box profile. 529 549 IPR025768 -
Cla01g00562 638 PANTHER SCD6 PROTEIN-RELATED 6 584 - -
Cla01g00562 638 MobiDBLite consensus disorder prediction 469 508 - -
Cla01g00562 638 PANTHER PROTEIN DECAPPING 5-LIKE 6 584 - -
Cla01g00562 638 MobiDBLite consensus disorder prediction 236 252 - -
Cla01g00562 638 MobiDBLite consensus disorder prediction 111 170 - -
Cla01g00562 638 Pfam FDF domain 446 546 IPR019050 -
Cla01g00562 638 MobiDBLite consensus disorder prediction 111 148 - -
Cla01g00562 638 SUPERFAMILY Sm-like ribonucleoproteins 17 85 IPR010920 -
Cla01g00562 638 SMART FDF_2 445 549 IPR019050 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00562 K18749 LSM14, RAP55, SCD6; protein LSM14 - csv:101215778 904.049
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g00562 Cla05g02337 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00562 Cla-Chr1:6241048 Cla05g02337 Cla-Chr5:34960582 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g247 Blo01g00476 . . . . . Bma14g01693 . Cmo04g01615 Cmo18g01071 . . Car04g01593 . Sed06g1855 Cpe09g00267 Cpe01g01755 Bhi07g01381 Tan04g0909 Cmetu10g0348 Lac13g0448 Hepe10g1862 . . Cla05g02337 Cam05g2511 Cec05g2535 Cco05g2578 Clacu05g2505 Cmu05g2367 Cre05g2484 Cone13ag0863 Cone19ag0863 . . Lsi04g00298 Csa05g02074 . Cme10g00301 . Blo11g00828 . . Bpe11g01686 . . . . . . Cma04g01995 . . Car15g01281 Cpe13g00029 . Bhi12g00822 . . . . . Lcy10g0875 Cla01g00562 Cam01g0585 Cec01g0577 Cco01g0601 Clacu01g0580 Cmu01g0551 Cre09g1956 Lsi09g00611 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001922 1 2 3 2 2 2 4 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 2 2 2 1 2 3 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00562 Cla_Chr01 FPKM 3.915228 4.298168 1.19043 1.452889 0.536663 0.887278 0.683319 0.327178 0.219094 0.225402