Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00562 ATGGATATGGCTTCAGATACTGGTTCCAGGGCGAGTTCAGCTGCCGATTCGTACATTGGAAGCTTGATAAGTTTGACTTCCAAGAGTGAAATTAGATACGAAGGCGTACTGTACAACATTAACACCGAAGAGTCCAGTATTGGACTAAGAAACGTGAGATCTTTTGGAACAGAAGGAAGAAAAAAAGATGGCCCCCAAGTCCCTCCAAGTGATAAAGTTTTTGAGTACATCTTATTCCGTGGAAGTGATATCAAGGTTAAATCGTCTCCACCTGTTCAGCCGGCAGCTCCTATAAATAATGATCCAGCAATCATTCAATCTCACTATCCCCCATCAGTTTCCACATCTACCAGCATGCATTCTGCTGTCAGTGGGTCACTACCTGATCATACTTCCCACACAGCATTTGGATTCCCTCAGTCTAATTTTCAAGGTGGTTTGCCTCCATATCAACCTGGAGGCAACTTGGGGTCGTGGGGAGCTTCTCCTCCGCCTCCTCCAAGTGCAAATGGCAGTGGACTTGCGATGCCCATGTATTGGCAAGGGTATTATGGCCCACCAAATGGGCTTCCTCAGTTACACCAGCAGTCGATTGTACGACCTCCTCCTGGTCTGTCAATACCTCCATCTTTGCAACAGTCAATGCAGTATCCTAACATTAGTGCGTCTTTACCCACTGGAGCTCCAAAACAACCTGAAGTTCCATCTCCCTTGCTCTCTGGTAGTAATAGTTCTCCTAACTTGACCTCCACTGTTGTGCCCCCTCCAACCTTTTCAACAGCTTTGCCTATGTTCCCTTTTACTTCTATTTCTGAAACGTTACCAAGTTCAGCTGCTAATAAGACAGCTGTTCCTACCCTTCCTGGAGCCCCAGTTAGTGTTAGTTTGCCAGTAGGTCCAATACTGTCTTCATTTTCTGTTGCAGATGTTAGTTCTGCCATACCACCAAGCTCTAATGAACCTAATACAGTTTCTGGTCCCTCATCACTGTATCAAACTGTGTCTCAGTCAACTTCATCTGTAGTTGGAATATCCAACTCTCGCGCTGAATCTTCTGTACCTTCTCTAGTTACCCCTGGGCAGCTGTTGCAGTCTGGGCCTGCTGCTGTGGTTTCATCTCAATCCTCACATACAGTGCATAAGGATGTGGAAGTGGTCCAATCATCATCGTTAGAACCTTCTAAGCCAGTGACAACAGAGGCCCAGCCACCAATACTACCACTACCTGTACTTTCAAGGCCTGTCCAGAAGGCCAATGGTGCTCATTTTCAGGCTCGCCATTTTTACAGAGGACGTGAAAGAGGAAGAGGGTCTGGGAGTTCCCGACCTGTGACCAAATTTATGGAAGATTTTGATTTCATAGCTATGAACGAAAAATTCAACAAGGATGAAGTATGGGGAAATCTAGGTAAAGGTAATAAATCTCATCTCAAGGATAAGGATGTGGATGGAAAGGTCAGTGATGAAGATGATGTTGAAGAAGAAGATGAAGGTGAACTCTCACAGTCTGGGATTAAGCCCTTGTATAACAAGGATGACTTCTTTGATTCACTCTCTTACAATGCTGTTGATAATGATCCTCAAAATGGGCGGACTAGATATTCAGAGCAAGTAAAGATAGACACAGAGACTTTTGGTGATTTTCCGAGGTATCGAGGGGGCCGAGGTGGGCGAGGTCCTGGACGTGGAGGGTACTTCCGTGGAGGATATCATGGAAGAGGATATGGCTATAATGGGAGGGGTCGGGGGCAAGGACGCTCATCATTTTATCCCAACGATAGCGAGGATGCAAAGGGGTTACTATGTCTCATACATAGGTCCCTCGGTCCCAATATCGTCTTCATTGCCCCATTTGGCAGCCACTCTACATCCATCCCTAACGCGTTCGCCCTGCAAATTGATCAAGTTTGCAAATAA 1917 45.91 MDMASDTGSRASSAADSYIGSLISLTSKSEIRYEGVLYNINTEESSIGLRNVRSFGTEGRKKDGPQVPPSDKVFEYILFRGSDIKVKSSPPVQPAAPINNDPAIIQSHYPPSVSTSTSMHSAVSGSLPDHTSHTAFGFPQSNFQGGLPPYQPGGNLGSWGASPPPPPSANGSGLAMPMYWQGYYGPPNGLPQLHQQSIVRPPPGLSIPPSLQQSMQYPNISASLPTGAPKQPEVPSPLLSGSNSSPNLTSTVVPPPTFSTALPMFPFTSISETLPSSAANKTAVPTLPGAPVSVSLPVGPILSSFSVADVSSAIPPSSNEPNTVSGPSSLYQTVSQSTSSVVGISNSRAESSVPSLVTPGQLLQSGPAAVVSSQSSHTVHKDVEVVQSSSLEPSKPVTTEAQPPILPLPVLSRPVQKANGAHFQARHFYRGRERGRGSGSSRPVTKFMEDFDFIAMNEKFNKDEVWGNLGKGNKSHLKDKDVDGKVSDEDDVEEEDEGELSQSGIKPLYNKDDFFDSLSYNAVDNDPQNGRTRYSEQVKIDTETFGDFPRYRGGRGGRGPGRGGYFRGGYHGRGYGYNGRGRGQGRSSFYPNDSEDAKGLLCLIHRSLGPNIVFIAPFGSHSTSIPNAFALQIDQVCK 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6241048 6250006 - ClCG01G005760.2 Cla01g00562 264151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00562 638 ProSiteProfiles FFD box profile. 507 522 IPR025761 -
Cla01g00562 638 CDD LSm14_N 15 85 IPR025609 -
Cla01g00562 638 SMART LSM14_2 12 109 IPR025609 -
Cla01g00562 638 Pfam Scd6-like Sm domain 18 85 IPR025609 -
Cla01g00562 638 MobiDBLite consensus disorder prediction 220 252 - -
Cla01g00562 638 MobiDBLite consensus disorder prediction 546 565 - -
Cla01g00562 638 MobiDBLite consensus disorder prediction 386 405 - -
Cla01g00562 638 MobiDBLite consensus disorder prediction 312 331 - -
Cla01g00562 638 ProSiteProfiles DFDF domain profile. 439 475 IPR025762 -
Cla01g00562 638 Gene3D - 8 89 - -
Cla01g00562 638 ProSiteProfiles TFG box profile. 529 549 IPR025768 -
Cla01g00562 638 PANTHER SCD6 PROTEIN-RELATED 6 584 - -
Cla01g00562 638 MobiDBLite consensus disorder prediction 469 508 - -
Cla01g00562 638 PANTHER PROTEIN DECAPPING 5-LIKE 6 584 - -
Cla01g00562 638 MobiDBLite consensus disorder prediction 236 252 - -
Cla01g00562 638 MobiDBLite consensus disorder prediction 111 170 - -
Cla01g00562 638 Pfam FDF domain 446 546 IPR019050 -
Cla01g00562 638 MobiDBLite consensus disorder prediction 111 148 - -
Cla01g00562 638 SUPERFAMILY Sm-like ribonucleoproteins 17 85 IPR010920 -
Cla01g00562 638 SMART FDF_2 445 549 IPR019050 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g00562 Cla05g02337 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00562 Cla-Chr1:6241048 Cla05g02337 Cla-Chr5:34960582 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00562 K18749 - csv:101215778 904.049