Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00563 ATGTTCACGCCTCAGAGGACGGGGTGGCCTGCTGTATCCCTCACACCTCGAACCGAACCTAAACTTGCACTTTCCAATTCCGTTCTTGTGGGGAAAGGCAAGGATGTGACTTTTACAGGCGGCCCACCGCCGCCGTTGGGGTCTCTGAACGACGAATTGTATAAAACCTCCACGGCGGTGGATACTGGGGACATGGATGATTGGAGGAAGTTTAAGAAGGCGGGGTTGTTGGACGCGGCCGCAATGGAGCGCAAGGATCGGGAAGCGCTTCTCGAGAAGGCTTCAAGGCTTCGAAGCGAGGTTAGCGATTATCATCAAGTCTTGCTCATTTTCTATCTTTTGATTAACTGGGGTTCAATTGTAATGTGGTGGCTTATATTACCTGTAATATACTGGCCTGCACGTTGGTCCCTGCTTTTTGATTATCAGCACAATTTAGGACTTCTTTTGATAGAGAAGAAAGATTGGGCTTCAAAGTATGACCAACTAGGGCAAGATTTAGCAGAAACTGAGGAGATCTTCAAACGCGAACAATCAGCACATTTAATTGCATTATCTGAAGTTGAAACGAGGAGGGATAACTTGAAGAAAGCTCTAGCTGCTGAGAAGCAACATGTTTCTAGTCTTAAAAAGGCTTTATGTGAAGTAAATGAGGAACGTGCAGAAATCAAGCTTACGTCTCAGAAGAAGTTGGCTGATGCAAATGCTTTGATGCATGGAATTGAGGAGAAATCTTTGGAGTTGCAGAAAAAGTTGAATGCTGCTGAAGCCAAGCTTGCTGAGGTAAATAGGAAGAGTTCAGAGTTGGAGATGCGAATGCATGAAGTTGAAGCTCGTGAAAGTGTGCTTCAAACTGAGCAGATATCCTTAGTCACGGGGAAAGAAGCACATCAGGCGACCTCCCATAAAGAAAGAGAAAGCTTACGTAAGTTGCAGCAGAAGTTGCAGGAATGGGAAGAAAGACTGAGCAAGAATCGTGAATTGCTTAATGATAAAGAGCAGAAGGTAAATGAAAATAGCACGACTATGAAGCAGAAAGAGAAGGATCTTGAAGAGATGAAGAAGAAGATTGATCTGTCAAGTTCAGTCCTGAAAAGGAAGGAAGATAATGTAAATAGACGATTAGCAGATGTGGAAGCAAAAGAGAAGATGGAGATCGAGCAGCTGCTTGACGAGCAAAGAGTAATTCTACAGAAGAAGAAAGAAGAGTTTGAGTTACAATTGGAAGAAAAGCGGCAGTCTCTGGATAATGAAGGTAGTACAAGGATAGGAGCAATCAAAAGGAAGGATCTTGAAACTAATCATGAGAAAGAAAAGTTGGTGAAGCAAGAGCAAGCTTTGGAGAAAAAGATGCTTCGAGCAAAGGAGAAAGAGGGTGAGCTTGAACAAAAGATAAAGACGTTGAAATCAAAAGATAAGATCTTGAAAGCTGATGAGAGAAAGCTGGAGGTGGAAAGGTTGCAAATGCTAGCTGATAGAGAGAGCTTACAGTCTCTCATTAATGAGATTGAGGAAATGAGGACCGAAAATTCTCAGAAGGAGCGGCAATTTCATGAGGAGAGGGAGAAATTGCAGGTGATGAAAGAAGAGAGATCAGAGCACATTCGTTTACAGTGTCAATTGATGCAGGAAATTGAGAGTTACAGGCTTCAGAACAAAATAGTTACGAAAGAACATGAGGATCTTAAGCAGGAAAGGGTCAAATTTGAGAGAGACTGGGAAGCCTTAGATGAAAAAAGGGCTGAAATACATAATGAACTTAGAGATCTTGTGGAGGAGAGGAAGAAATTAGAGATCTTGCAAGGGACAGAGGAGGAAAGGTTGAGAAATGAGAAAAATGAGATGCTAATTTATATGCAGAGGGAGTTGGAGAATGTCAAACAAGAAAAGGAATTATTTGCCTCAACTACGAGGCATGAGCAGCAAGCCTTGTCTGAACAAGCTCAAAATAAGCATAATCAACTACTTCAAGATATAGAATTTCAAAGAAAAGATCTTGAAAGTCGCTTGCAGAATAGCCAGATGGAACTAGCGAAAATACGGCAGGAAAGGGAGGTATCATTTGAAGAGGAGAGAGAGAGAGAGCGGAATGAATTGTTTTGCTTGAGAGAGATTGCTCAGAAAGAAACAGAAGAGTTATTGTCTGAGAGGCATCGATTGGAAAAGGAAAAGGAGGTGGTTTCCCTGAATAGGAAGCAATTGATAGCAGACCATCTTGAAATTCGTCAAGATATTGATAAGCTCAACATATTAAGTAAGGAGCTTAAAATTCAGAGAGAACAACTTATCCAGGATAGGGTTCGCTTTTTGACCTTTGTTGATAAGCATAAGAGTTGTGGGAAGTGTGGTGTGTCCATTGAGGAATTTATAGTTCCTGACCTCCAAATACCTGAAGAAATTAGAGAATCACACCCTCTAGCAAAGTTAGATGCCGATTCTCTACAAAATCTCCAAAGAGAATTTACTGCTTCAGAGTTTGGTTCTTCAGATTCTGGAGGTCGCATGTCTTGGCTCAGAAGATGCAGCAGAAAGATTTTGAATCTATCTCCTATTAAGAAAATTGGACATGTAATTCCTCCTGTTTCTGGGAAGTTGGCTGCAGATTGTACTGTTTTAGAAGCCAAGGAGCCTAATGTCAATGTTGGCAATGTGAAAAGGTCTGGTATGGCTTATGAACCGCAAGAATCTTGTTTTAATGAGAATGAATCATCTGATGTTGAAAGACTTTCATTCAGTGATAACATCAGAGGGGCGGAGGATAGGCATGCAAACACGTTCGATGATTTTAGCAATTTAGACGGCAAGTTTGAAGAAGCTTCAGAAGCTTCAAAACAACGAGACATGAAGAGGGAGAGGCAAAAACATGAGAAAGGACTTAAGTCTGGTCATAGAACACGTTCAGTGAAGGCAACTGTTCAAGATGCAAAAAAATTTCTTGGGGAGACTGCGGGACAGTCAGATCTTAATGTACCTGTACAAAGTGATTTGAATTCTTTAAATAAAGGAATTAGCAATGTTCGGAAGAGATCATTGCCAGAATCTTCCACAGTTTCTATTAGTGACCAAGATGGAGATGATAGCGAAGGATGCTCTGACAGCATCACAACAGGCAGGCAACGTAAAAGGCGGCAAAAAATTGCTTCTGTGCAGGCGCAAGGAGAAAGTCGATATAATCTGAGGCGACACAAGATTGCTGGCAAAGCTAATGCAACTCAGGTTTCAGAAAATCTGACGACAGTGATTGAGAAAGAAAACGAAGAAACCCCTAGTGTTGATGGTGAAAACGGGAAAAAAGTGGACTCTGTGCACATTACAACAGTTGGAACTATCTATCGTTCCGAGGATAGAGTAGTTCAGTTTGAATTGCAAAGAACGGCTGAAGATAAAACTTCCTCGGAGAAGTTGGTTACAGTTAATGATTTACGCGATGAAGCGAATGGTTCAGCCGAATATGAAGATGAAGATCAAAGCATACTCGATGATGAAGACGAGTATGATGAAGAGCAGCCTGATGTGGGATCAATTGGAAAGAAGATTTGGACCTTTTTCACAACTTAG 3558 41.54 MFTPQRTGWPAVSLTPRTEPKLALSNSVLVGKGKDVTFTGGPPPPLGSLNDELYKTSTAVDTGDMDDWRKFKKAGLLDAAAMERKDREALLEKASRLRSEVSDYHQVLLIFYLLINWGSIVMWWLILPVIYWPARWSLLFDYQHNLGLLLIEKKDWASKYDQLGQDLAETEEIFKREQSAHLIALSEVETRRDNLKKALAAEKQHVSSLKKALCEVNEERAEIKLTSQKKLADANALMHGIEEKSLELQKKLNAAEAKLAEVNRKSSELEMRMHEVEARESVLQTEQISLVTGKEAHQATSHKERESLRKLQQKLQEWEERLSKNRELLNDKEQKVNENSTTMKQKEKDLEEMKKKIDLSSSVLKRKEDNVNRRLADVEAKEKMEIEQLLDEQRVILQKKKEEFELQLEEKRQSLDNEGSTRIGAIKRKDLETNHEKEKLVKQEQALEKKMLRAKEKEGELEQKIKTLKSKDKILKADERKLEVERLQMLADRESLQSLINEIEEMRTENSQKERQFHEEREKLQVMKEERSEHIRLQCQLMQEIESYRLQNKIVTKEHEDLKQERVKFERDWEALDEKRAEIHNELRDLVEERKKLEILQGTEEERLRNEKNEMLIYMQRELENVKQEKELFASTTRHEQQALSEQAQNKHNQLLQDIEFQRKDLESRLQNSQMELAKIRQEREVSFEEERERERNELFCLREIAQKETEELLSERHRLEKEKEVVSLNRKQLIADHLEIRQDIDKLNILSKELKIQREQLIQDRVRFLTFVDKHKSCGKCGVSIEEFIVPDLQIPEEIRESHPLAKLDADSLQNLQREFTASEFGSSDSGGRMSWLRRCSRKILNLSPIKKIGHVIPPVSGKLAADCTVLEAKEPNVNVGNVKRSGMAYEPQESCFNENESSDVERLSFSDNIRGAEDRHANTFDDFSNLDGKFEEASEASKQRDMKRERQKHEKGLKSGHRTRSVKATVQDAKKFLGETAGQSDLNVPVQSDLNSLNKGISNVRKRSLPESSTVSISDQDGDDSEGCSDSITTGRQRKRRQKIASVQAQGESRYNLRRHKIAGKANATQVSENLTTVIEKENEETPSVDGENGKKVDSVHITTVGTIYRSEDRVVQFELQRTAEDKTSSEKLVTVNDLRDEANGSAEYEDEDQSILDDEDEYDEEQPDVGSIGKKIWTFFTT 1185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6253481 6270464 + ClCG01G005770.1 Cla01g00563 264152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00563 1185 MobiDBLite consensus disorder prediction 1007 1034 - -
Cla01g00563 1185 Coils Coil 745 765 - -
Cla01g00563 1185 Coils Coil 545 600 - -
Cla01g00563 1185 Coils Coil 185 229 - -
Cla01g00563 1185 PANTHER PROTEIN CROWDED NUCLEI 4 139 1185 IPR040418 GO:0005634|GO:0006997
Cla01g00563 1185 Coils Coil 437 471 - -
Cla01g00563 1185 PANTHER PROTEIN CROWDED NUCLEI 4 1 105 IPR040418 GO:0005634|GO:0006997
Cla01g00563 1185 Coils Coil 609 629 - -
Cla01g00563 1185 Coils Coil 80 100 - -
Cla01g00563 1185 Coils Coil 301 370 - -
Cla01g00563 1185 MobiDBLite consensus disorder prediction 937 955 - -
Cla01g00563 1185 MobiDBLite consensus disorder prediction 1142 1171 - -
Cla01g00563 1185 MobiDBLite consensus disorder prediction 1147 1169 - -
Cla01g00563 1185 MobiDBLite consensus disorder prediction 1007 1063 - -
Cla01g00563 1185 PANTHER PROTEIN CROWDED NUCLEI 3 139 1185 - -
Cla01g00563 1185 PANTHER PROTEIN CROWDED NUCLEI 3 1 105 - -
Cla01g00563 1185 Coils Coil 238 279 - -
Cla01g00563 1185 Coils Coil 383 414 - -
Cla01g00563 1185 MobiDBLite consensus disorder prediction 937 969 - -
Cla01g00563 1185 Coils Coil 703 723 - -
Cla01g00563 1185 Coils Coil 638 683 - -
Cla01g00563 1185 Coils Coil 489 530 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00563 - - - csv:101222820 1837.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00563 Cla-Chr1:6253481 Cla11g00505 Cla-Chr11:5720551 0 dispersed
Cla01g00563 Cla-Chr1:6253481 Cla01g01750 Cla-Chr1:32402167 1.01E-66 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g246 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0864 Cone19ag0864 . . . Csa05g02073 . . . Blo11g00826 Bda07g01523 . Bpe11g01685 . . . . Cmo04g02051 . . . Car04g01940 . . . Bhi12g00824 . . . . . Lcy10g0868 Cla01g00563 Cam01g0586 Cec01g0578 Cco01g0602 Clacu01g0581 Cmu01g0552 Cre09g1955 Lsi09g00612 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004989 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 3 4 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00563 Cla_Chr01 FPKM 0.0 0.0 0.0 0.0 3.263489 2.799957 2.522873 0.0 0.0 0.0