Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00567 ATGAAAGCGATGAAAAGAGACGCTGTTTACGGAAAATCACCTGGTGACAAAATCGCTCTCGCTTCACCATTAACAGCTCCCACCATATTCGGCACGGCAGCCACGTGTAATATCCTAGTTGGCTGCCAGCTTTTCATCCTTTCATCTAATTTCTTCATCTTCTCTCTTCTTCTGAACCTCACTCTCTCTCTTCCTTTCTCGCTTGCATTCTTCCTTCCACCAATGACGGACACTACTGACGATATCGCTGAAGAAATCTCCTTCCAGAGCTTCGACGATGACTGTAAATTGCTTGGCAACCTTCTTCACGATGTCTTACAGCGCGAAGTTGGCACCGAATTCATGGACAAACTTGAACGAACTCGAGTCCTCGCTCAGAGCGCCTGCAATATGAGGATGGCGGGCATCGAGGATACGGCAGATATGCTCGAGAGGCAGCTTGCATCGGAGTTGTCGGAAATGACTTTAGACGAAGCGTTCTCTCTGGCTCGTGCATTCAGCCATTCTCTCAATTTGATGGGGATTGCAGAAACCCACCACAGGGTTCGTAAGTCGAGAAATATTGCACCTCTATCAAGATCCTGCGATGAAGTTTTTAATCAGCTAGTGCAGGGCGGAGTTTCTCCTGACGAGCTTTACGACAGTGTTTGCAAGCAGGAGGTTGAAATTGTTCTTACAGCACATCCAACTCAAATTAATCGTCGTACTTTGCAATACAAACATCTTCGCATTGCACATCTATTGGACTACAATGACCGACCTGACCTTAGTCCTGAAGATCGGGAAATGCTAATTGATGATCTGGTGAGAGAGATAACTTCAATATGGCAGACAGATGAACTTAGACGCCACAAGCCCACACCAGTTGATGAAGCTAGGGCTGGCTTGAACATTGTGGAACAGTCCCTGTGGAAAGCTGTGCCTTATTATTTACGTCGACTCAGCAATGCCTTAAAGAAGGTCACAAGAGACGTCTCTCTTTTGTCTAGGTGGATGGCTATTGATCTATACATTCGAGAGCTTGATAGCTTGCAGTTTGAACTTTCCATGCACCGATGCAGCGATAGATTATACAGACTGGCACATGAAATTCTTGAAAAGGAAGCTGTAGCTGAAGATCGACACGAGATATGGAATCAGTCTTCAAGCAAAAATGAATTGAAGAATCAGGGCCATCAAGCTGCTGCACTTCCAAGACAACTTCCACTTAGGGCTGATCTACCTTCATGCACGGATTGCAATGATGGTGAATCCAGGTATTCTAGAGTCGAATTTCCGAGGACTGATCATACGTCATCAAATAATCAGGAAATTACTGTTCCTGATACAAGTGCATCTTTATCAAATGGGAATTCATCTAGTGCAAGTGCATTTCAGTCGAATTCTATGCCTCGTAGTGCATCTTTCAACTCGACTCAACTCCTTGCTCAGAGGAAACTGTTTGCAGAATCTCAGATTGGGAGGACCAGTTTTCAGAAGCTTTTAGAACCCAGGCTCCCTCTACGTCCTGGAATTGCACCCTACCGCGTTGTGCTGGGTAGTGTAAAAGACAAGCTTGTAAAAACACGGAGGAGGCTGGAGCTGCTTCTTGAGGATCTTCCTTGTGAACAAGATCCTTCGGATTACTATGAGACTGCAGATCAACTATTGGAGCCGCTGCTTTTATGCTATGAGTCTCTGCAATCATGTGGATCTGTGGTGCTTGCTGATGGTCGGTTAGTTGATCTGATTAGAAGAGTTGCTACATTTGGTATGGTATTAATGAAGCTGGATTTACGTCAGGAATCTGGTAGACATGCCGAAACTTTGGACGCCATTACAACGTATTTGGACATGGGTTCATATAGTGACTGGGATGAAGAAAGGAAGTTGGAATTTCTAACAAGAGAGCTGAAGGGGAAGCGACCACTAGTTCCTCCAACTATTGAGGTTCCTTCTGATGTTAAAGAAGTTTTGGATACCTTTCGTGTTGCTGCTGAACTAGGGAGTGAATCACTTGGTGCCTATGTGATCTCTATGGCCTCGAATGCAAGTGACGTCCTTGCAGTGGAACTTCTGCAGAAGGATGCACGACTTGCTGTTAGTGGCGAGTTAGGACGACCGTGTCCTGGTGGAACGTTGCGGGTGGTTCCTCTGTTTGAAACTGTGGACGACTTGAGGAAAGCAGGATCGTCGATCAGGAAACTATTATCTATTGATTGGTATCGAGAACACATAATAAAGAACCATAATGGGCATCAAGAGGTCATGGTAGGTTATTCTGATTCTGGAAAAGATGCTGGGCGCTTCACTGCTGCATGGGAACTTTACAAAGCTCAAGAAGATGTTGTGGCTGCATGTAACGAGTATGGTATTAAAGTTACCCTGTTCCATGGGCGTGGAGGGAGCATCGGCCGTGGTGGTGGGCCAACGTATCTGGCCATTCAATCGCAGCCTCCAGGTTCGGTAATGGGTACTTTACGATCAACTGAGCAAGGGGAGATGGTACAGGCGAAGTTCGGGTTGCCGCAGACTGCTGTTAGACAGCTAGAGATATATACCACGGCCGTACTCCTTTCAACCCTGCGTCCACCACTTCCACCTCGAGAAGCAAAATGGCGTAAGCTCATGGAGGAGATCTCAAAAATCAGCTGTGAGAATTACCGGAGCATGGTATATGAAAATCCAGAATTCATTTCATACTTCAATGAGGCCACTCCCCAAGCAGAGCTTGGCTTCCTTAACATTGGAAGCCGGCCAACAAGAAGAAAGACCTCTGTTGGGATCGGGCATCTTCGAGCTATACCATGGGTTTTTGCTTGGACACAAACTAGATCTGTTCTTCCAGCTTGGCTTGGGGTTGGGGCAGGTTTAAAAGGTGTATGTGAAAAGGGTCACACTGAAGACTTGAAATCAATGTACGAAGAGTGGCCTTTCTTCCAGAGCACCCTAGACCTTATAGAGATGGTTTTGGGGAAAGCTGATACTCACATTGCAAAGCATTATGATGAAGTCCTTGTGTCGGAGAGTCGGCGCGAAATCGGATCTACATTGAGGAAGGAACTAGTAGAGACTGAGAAATATGTTTTGGTAGTAAGCAGACATGGGAAACTGTCTGAGAACAATCGAAGTTTGAGAAAGCTGATCGAAAGCAGACTTCATTATCTTAATCCTTTGAACCTACTACAAGTTGAGATATTAAAAAGGCTGAGATGTGATGCAGAGAACAACAAACTAAGAGATGCATTGCTTATTACTATCAATGGGATAGCAGCTGGAATGAGGAACACAGGTTAA 3276 45.45 MKAMKRDAVYGKSPGDKIALASPLTAPTIFGTAATCNILVGCQLFILSSNFFIFSLLLNLTLSLPFSLAFFLPPMTDTTDDIAEEISFQSFDDDCKLLGNLLHDVLQREVGTEFMDKLERTRVLAQSACNMRMAGIEDTADMLERQLASELSEMTLDEAFSLARAFSHSLNLMGIAETHHRVRKSRNIAPLSRSCDEVFNQLVQGGVSPDELYDSVCKQEVEIVLTAHPTQINRRTLQYKHLRIAHLLDYNDRPDLSPEDREMLIDDLVREITSIWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPYYLRRLSNALKKVTRDVSLLSRWMAIDLYIRELDSLQFELSMHRCSDRLYRLAHEILEKEAVAEDRHEIWNQSSSKNELKNQGHQAAALPRQLPLRADLPSCTDCNDGESRYSRVEFPRTDHTSSNNQEITVPDTSASLSNGNSSSASAFQSNSMPRSASFNSTQLLAQRKLFAESQIGRTSFQKLLEPRLPLRPGIAPYRVVLGSVKDKLVKTRRRLELLLEDLPCEQDPSDYYETADQLLEPLLLCYESLQSCGSVVLADGRLVDLIRRVATFGMVLMKLDLRQESGRHAETLDAITTYLDMGSYSDWDEERKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSESLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVDDLRKAGSSIRKLLSIDWYREHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEYGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLSTLRPPLPPREAKWRKLMEEISKISCENYRSMVYENPEFISYFNEATPQAELGFLNIGSRPTRRKTSVGIGHLRAIPWVFAWTQTRSVLPAWLGVGAGLKGVCEKGHTEDLKSMYEEWPFFQSTLDLIEMVLGKADTHIAKHYDEVLVSESRREIGSTLRKELVETEKYVLVVSRHGKLSENNRSLRKLIESRLHYLNPLNLLQVEILKRLRCDAENNKLRDALLITINGIAAGMRNTG 1091
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6329105 6340926 + ClCG01G005810.2 Cla01g00567 264156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00567 1091 Gene3D Phosphoenolpyruvate/pyruvate domain 331 405 - -
Cla01g00567 1091 Gene3D Phosphoenolpyruvate/pyruvate domain 453 585 - -
Cla01g00567 1091 MobiDBLite consensus disorder prediction 427 461 - -
Cla01g00567 1091 MobiDBLite consensus disorder prediction 418 461 - -
Cla01g00567 1091 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 82 1091 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cla01g00567 1091 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 91 1091 IPR015813 GO:0003824
Cla01g00567 1091 Pfam Phosphoenolpyruvate carboxylase 93 320 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cla01g00567 1091 Pfam Phosphoenolpyruvate carboxylase 499 1091 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cla01g00567 1091 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 749 761 IPR033129 -
Cla01g00567 1091 Hamap Phosphoenolpyruvate carboxylase [ppc]. 83 1091 IPR022805 GO:0006099|GO:0008964|GO:0015977
Cla01g00567 1091 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 224 235 IPR018129 -
Cla01g00567 1091 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 4 82 1091 - -
Cla01g00567 1091 Coils Coil 133 153 - -
Cla01g00567 1091 PRINTS Phosphoenolpyruvate carboxylase signature 922 948 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cla01g00567 1091 PRINTS Phosphoenolpyruvate carboxylase signature 223 236 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cla01g00567 1091 PRINTS Phosphoenolpyruvate carboxylase signature 789 818 IPR021135 GO:0006099|GO:0008964|GO:0015977
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00567 K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] - csv:101216256 1860.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00567 Cla-Chr1:6329105 Cla11g01713 Cla-Chr11:30674021 1.02E-36 dispersed
Cla01g00567 Cla-Chr1:6329105 Cla07g00260 Cla-Chr7:2888024 1.42E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g241 . Blo16g01045 . Bda11g01124 Bpe13g01321 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02069 . . . . . Bda11g01124 . . . Bma06g00779 . . . . Cma15g01420 . Car15g01282 Cpe13g00027 . Bhi12g00828 . . . . . Lcy10g0852 Cla01g00567 Cam01g0590 Cec01g0582 Cco01g0606 Clacu01g0585 Cmu01g0556 Cre09g1951 Lsi09g00615 . Chy09g00939 Cme09g01467
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008238 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00567 Cla_Chr01 FPKM 0.0 0.366239 0.227648 0.0 0.0 0.0 0.0 0.0 0.0 0.314859